FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOBB (Chaperone protein dnaJ OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS 395
            +YY+VLG+   AS+ EIKKA+   A K HPDKN  +  A + F+ + EAYQVLSDP ++  YD +G +
Sbjct:    5 DYYEVLGLQKGASDDEIKKAFRKLAIKYHPDKNKGNTEAEEKFKEINEAYQVLSDPEKKSNYDQFGSA 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOBA (Chaperone protein dnaJ OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS 395
            +YY+VLG+   AS+ EIKKA+   A K HPDKN  +  A + F+ + EAYQVLSDP ++  YD +G +
Sbjct:    5 DYYEVLGLQKGASDDEIKKAFRKLAIKYHPDKNKGNTEAEEKFKEINEAYQVLSDPEKKSNYDQFGSA 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ2_THET8 (Chaperone protein dnaJ 2 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dnaJ2 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 44/110 (40.00%), Postives = 57/110 (51.82%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGK--------------SGISTEAIIDPAAIFAMLFGSELF 464
            M  + +YY +LGV   A++ EIK+AY   AR+ HPD N   P A + F+ + EAY VLSDP +R+ YD YG               SG   E   D +  F  LFG  LF
Sbjct:    1 MAAKKDYYAILGVPRNATQEEIKRAYKRLARQYHPDVN-KSPEAEEKFKEINEAYAVLSDPEKRRIYDTYGTTEAPPPPPPGGYDFSGFDVE---DFSEFFQELFGPGLF 106          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ1_DROME (DnaJ protein homolog 1 OS=Drosophila melanogaster GN=DnaJ-1 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 41/104 (39.42%), Postives = 56/104 (53.85%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI----------------STEAIIDPAAIFAMLFGS 455
            ++Y +LG+   AS+ EIKKAY   A K HPDKN   P A + F+ + EAY+VLSD  +R  +D YG+ G+                + +   DP A FA  FGS
Sbjct:    4 DFYKILGLERKASDDEIKKAYRKLALKYHPDKN-KSPQAEERFKEIAEAYEVLSDKKKRDIFDNYGEDGLKGGQPGPDGGGQPGAYTYQFHGDPRATFAQFFGS 106          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJ5B_BOVIN (DnaJ homolog subfamily C member 5B OS=Bos taurus GN=DNAJC5B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  198 YDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            Y++LG+   AS  EIKK Y   A K HPDKNP+DP AA+ F+ +  A+ +L+D ++R  YD YG  G+
Sbjct:   21 YEILGLHKGASNEEIKKTYRKLALKHHPDKNPDDPGAAEKFKEINNAHTILTDMSKRNIYDKYGSLGL 88          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNJB (Chaperone protein dnaJ OS=Synechococcus sp. GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS-TEAIIDPAAIFAMLFG-SELFEDYIGQLAMASVA 503
            +YY++LGVS  +S+ EIK+AY   ARK HPD N  +P A + F+ +  AY+VLSD   +  YD +G++G+S   A       FA + G +++FE +    A A  +
Sbjct:    4 DYYEILGVSRDSSKEEIKRAYRRLARKYHPDVN-KEPGAEERFKEINRAYEVLSDNELKARYDRFGEAGLSGAAAAASGFQDFAGMGGFADIFESFFTNFAGAGAS 108          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_RHOCA (Chaperone protein dnaJ OS=Rhodobacter capsulatus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 3
Query:  186 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS-------GISTEAIIDPAAIFAMLFGSELFEDYIG 479
            + ++Y+VLGVS  AS  EIKKAY  KA+++HPD+N     A   F+ +  AY VL D  ++ AYD YG +       G          A F+  F S++FED  G
Sbjct:    3 KVDFYEVLGVSKGASAEEIKKAYRSKAKELHPDRNQGQSAAEAQFKEVNGAYDVLKDGDKKAAYDRYGHAAFEGGMGGGGPRGPYGQGADFSSAF-SDVFEDLFG 106          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEHT (Chaperone protein dnaJ OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            + + +YY+VLGVS  ASE +IKKAY   A K HPD+   D      F+ + EAY++L+D  +RQ YD YG
Sbjct:    1 MSKRDYYEVLGVSKDASERDIKKAYKRLAMKYHPDRTSGDKELETKFKEVKEAYEILTDAQKRQTYDQYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_POLSJ (Chaperone protein dnaJ OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPND--PLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            +YYD LGV   AS+ +IKKAY   A K HPD+N  D   ++ + F+   EAY+VLSD  +R AYD YG +G+
Sbjct:    5 DYYDTLGVPKNASDDDIKKAYRKLAMKHHPDRNQGDKSKVSEEKFKEAKEAYEVLSDENKRMAYDQYGHAGV 76          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LACF3 (Chaperone protein dnaJ OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 3
Query:  186 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            E + YDVLGV   ASEAEIK+AY   A K HPD N ++P A + F+ + EAY+ LSD  +R  YD +G +G
Sbjct:    3 EEDLYDVLGVKKDASEAEIKRAYRKLAAKYHPDVN-HEPGAEKKFKKINEAYETLSDDQKRAQYDQFGTTG 72          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_CLOBB1.395e-1148.53Chaperone protein dnaJ OS=Clostridium botulinum (s... [more]
DNAJ_CLOBA1.395e-1148.53Chaperone protein dnaJ OS=Clostridium botulinum (s... [more]
DNAJ2_THET81.395e-1140.00Chaperone protein dnaJ 2 OS=Thermus thermophilus (... [more]
DNAJ1_DROME1.395e-1139.42DnaJ protein homolog 1 OS=Drosophila melanogaster ... [more]
DNJ5B_BOVIN1.822e-1147.06DnaJ homolog subfamily C member 5B OS=Bos taurus G... [more]
DNAJ_SYNJB1.822e-1138.68Chaperone protein dnaJ OS=Synechococcus sp. GN=dna... [more]
DNAJ_RHOCA1.822e-1139.05Chaperone protein dnaJ OS=Rhodobacter capsulatus G... [more]
DNAJ_PSEHT1.822e-1147.14Chaperone protein dnaJ OS=Pseudoalteromonas halopl... [more]
DNAJ_POLSJ1.822e-1148.61Chaperone protein dnaJ OS=Polaromonas sp. (strain ... [more]
DNAJ_LACF31.822e-1150.70Chaperone protein dnaJ OS=Lactobacillus fermentum ... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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