FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_DIAST (Chaperone protein dnaJ OS=Diaphorobacter sp. (strain TPSY) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPL--AAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            + + ++Y+VLGV   AS+ E+KKAY   A K HPD+N  D    A + F+   EAY++LSD  +R AYD YG +G+
Sbjct:    1 MSKRDFYEVLGVPKNASDDELKKAYRKLAMKYHPDRNQGDAAKPAEEKFKEAKEAYEILSDAQKRAAYDQYGHAGV 76          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_COLP3 (Chaperone protein dnaJ OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            + + +YY+ LGVS  ASE E+KKAY   A K HPD+   D    + F+ + EAY++L+D  +R AYD YG
Sbjct:    1 MSKRDYYETLGVSQDASEKEVKKAYKKLAMKYHPDRTQGDKSKEETFKEVKEAYEILNDDQKRAAYDQYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ACEP3 (Chaperone protein dnaJ OS=Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153) GN=dnaJ PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            M  + +YY +L VS TA+  E+KK+Y   A K HPD+NP D  A   F+ + +AY +L D  +R AYD YG
Sbjct:    1 MATQLDYYAILEVSRTATADELKKSYRKLAMKYHPDRNPGDDAAEAKFKEINQAYDILKDEQKRAAYDQYG 71          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ2_STRCO (Chaperone protein dnaJ 2 OS=Streptomyces coelicolor GN=dnaJ2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 3
Query:  189 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            T+YY VLGV   AS+ EIKKA+   AR++HPD NP DP   + F+ +  AY+VLSDP ++Q YD  G
Sbjct:    3 TDYYAVLGVRRDASQDEIKKAFRRLARELHPDVNP-DPKTQERFKEINAAYEVLSDPQKKQVYDLGG 68          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ2_STRAW (Chaperone protein dnaJ 2 OS=Streptomyces avermitilis GN=dnaJ2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 3
Query:  189 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            T+YY VLGV   AS+ EIKKA+   AR++HPD NP DP   + F+ +  AY+VLSDP ++Q YD  G
Sbjct:    3 TDYYAVLGVRRDASQDEIKKAFRRLARELHPDVNP-DPKTQERFKEINAAYEVLSDPQKKQVYDLGG 68          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ2_STRAL (Chaperone protein dnaJ 2 OS=Streptomyces albus G GN=dnaJ2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 3
Query:  189 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            T+YY VLGV   AS+ EIKKA+   AR++HPD NP DP   + F+ +  AY+VLSDP ++Q YD  G
Sbjct:    3 TDYYAVLGVRRDASQDEIKKAFRRLARELHPDVNP-DPKTQERFKEINAAYEVLSDPQKKQVYDLGG 68          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ1_SYNY3 (Chaperone protein dnaJ 1 OS=Synechocystis sp. (strain PCC 6803) GN=dnaJ1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 404
            +YY  LGV+  A + EIK+AY   ARK HPD N  +P A + F+ +  AY+VLS+P  RQ YD +G++G+S
Sbjct:    4 DYYQTLGVTRDADKDEIKRAYRRLARKYHPDVN-KEPGAEEKFKEINRAYEVLSEPEIRQRYDQFGEAGVS 73          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DJB12_BOVIN (DnaJ homolog subfamily B member 12 OS=Bos taurus GN=DNAJB12 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIST--------------EAIIDPAAIFAMLFG 452
            +YY++LGVS  AS+ ++KKAY   A K HPDKN + P A + F+ +G AY VLS+P +R+ YD +G                    EA I P  +F M FG
Sbjct:  110 DYYEILGVSRGASDEDLKKAYRKLALKFHPDKN-HAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDDKGQAARHGHGHGDFHRGFEADISPEDLFNMFFG 209          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: CWC23_SCHPO (Pre-mRNA-splicing factor cwc23 OS=Schizosaccharomyces pombe GN=cwf23 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 49/166 (29.52%), Postives = 87/166 (52.41%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFEDYIGQLAMASVASLDIFTEGEEFDAKKLQDKMKVVQKEREEKLADILRGRLNQYVQGKQEDFINYAEAEVSRLS 689
            +YY++LG++  A + EI +A+   + K HPDKNPNDP AA+ F +L  AY  L D   R+AYD+   + ++ +   +     A  F  +   D + +       SL    E +E +  +LQ+K++ +Q+E     A++ R R N+  + +++      E   S++S
Sbjct:    9 DYYELLGINEDAQDQEIHRAWRKTSLKYHPDKNPNDPKAAEKFHMLQLAYNALIDVQLRKAYDSERFAKLARKRREE-----AFNFQRKSMVDDLRERERQFYDSL----EKKENERDRLQEKLRALQEES----ANLRRQRENRLREEQEQSKRRKQETPSSKIS 161          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: JJJ1_YEAST (J protein JJJ1 OS=Saccharomyces cerevisiae GN=JJJ1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  186 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNP-NDPLAAQNFQVLGEAYQVLSDPAQRQAYDAY 386
            +T YY++LGV   AS+ E+KKAY  KA + HPDKNP N   A Q F V+  AY+VLSDP +R  YD++
Sbjct:    2 KTCYYELLGVETHASDLELKKAYRKKALQYHPDKNPDNVEEATQKFAVIRAAYEVLSDPQERAWYDSH 69          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_DIAST1.822e-1144.74Chaperone protein dnaJ OS=Diaphorobacter sp. (stra... [more]
DNAJ_COLP31.822e-1145.71Chaperone protein dnaJ OS=Colwellia psychrerythrae... [more]
DNAJ_ACEP31.822e-1145.07Chaperone protein dnaJ OS=Acetobacter pasteurianus... [more]
DNAJ2_STRCO1.822e-1152.24Chaperone protein dnaJ 2 OS=Streptomyces coelicolo... [more]
DNAJ2_STRAW1.822e-1152.24Chaperone protein dnaJ 2 OS=Streptomyces avermitil... [more]
DNAJ2_STRAL1.822e-1152.24Chaperone protein dnaJ 2 OS=Streptomyces albus G G... [more]
DNAJ1_SYNY31.822e-1147.89Chaperone protein dnaJ 1 OS=Synechocystis sp. (str... [more]
DJB12_BOVIN1.822e-1140.59DnaJ homolog subfamily B member 12 OS=Bos taurus G... [more]
CWC23_SCHPO1.822e-1129.52Pre-mRNA-splicing factor cwc23 OS=Schizosaccharomy... [more]
JJJ1_YEAST2.379e-1152.94J protein JJJ1 OS=Saccharomyces cerevisiae GN=JJJ1... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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