FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJB7_MOUSE (DnaJ homolog subfamily B member 7 OS=Mus musculus GN=Dnajb7 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNP-NDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            +YY+VLGV   AS  +IK+AY   A K HPDKNP N   A + F+ + EAY+VLS+  +R  YD YGK G+
Sbjct:    3 DYYEVLGVQRYASPEDIKRAYRKVALKWHPDKNPENKEEAERKFKEVAEAYEVLSNVEKRDIYDKYGKEGL 73          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJB7_HUMAN (DnaJ homolog subfamily B member 7 OS=Homo sapiens GN=DNAJB7 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNP-NDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 404
            +YY+VLG+   AS  +IKKAY+  A K HPDKNP N   A + F+ + EAY+VLS+  +R  YD YG  G++
Sbjct:    3 DYYEVLGLQRYASPEDIKKAYHKVALKWHPDKNPENKEEAERKFKEVAEAYEVLSNDEKRDIYDKYGTEGLN 74          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_WOLWR (Chaperone protein dnaJ OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 404
            + + +YYD+L V   AS  EIKKAY   A K HPD+NP +  A + F+ +  AY+VLSD  +R  YD YG  G S
Sbjct:    1 MSKKDYYDLLEVGRNASIDEIKKAYKKLALKYHPDRNPGNQEAEEKFKEVTAAYEVLSDSEKRAGYDRYGHEGAS 75          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LACCB (Chaperone protein dnaJ OS=Lactobacillus casei (strain BL23) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS 395
            M  + +YY+ LGVS  A +  I+KA+   ++K HPD N + P A Q F+ + EAYQVLSDP +R AYD YG +
Sbjct:    1 MADQKDYYETLGVSRDADDDTIRKAFRKLSKKYHPDLN-HAPGAEQKFKDINEAYQVLSDPQKRAAYDQYGSA 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LACC3 (Chaperone protein dnaJ OS=Lactobacillus casei (strain ATCC 334) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS 395
            M  + +YY+ LGVS  A +  I+KA+   ++K HPD N + P A Q F+ + EAYQVLSDP +R AYD YG +
Sbjct:    1 MADQKDYYETLGVSRDADDDTIRKAFRKLSKKYHPDLN-HAPGAEQKFKDINEAYQVLSDPQKRAAYDQYGSA 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_DICT6 (Chaperone protein dnaJ OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            M  + +YY++LGV   A++ EIK+AY    R+ HPD N  DP A + F+ + EAY+VLSDP +R  YD +G  G
Sbjct:    1 MPTKKDYYEILGVPRNATQDEIKQAYRRLVRQYHPDLN-KDPSAHEKFKEINEAYEVLSDPQKRAQYDQFGHVG 73          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BUCAP (Chaperone protein dnaJ OS=Buchnera aphidicola subsp. Schizaphis graminum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI-------STEAIIDPAAIFAMLFGSELFEDYIG 479
            +YY +LG+  +A E EIKKAY   A K HPD+N  D  A   F+ + EAY++L +  +R AYD YG +         +T +    +  F  +FG ++F D  G
Sbjct:    5 DYYQILGIPKSAEEREIKKAYKRLAMKYHPDRNQGDKNAENKFKEIKEAYEILINEEKRTAYDQYGHAAFENGYNQNNTYSTFTSSTDFGDIFG-DVFGDIFG 106          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ2_CORDI (Chaperone protein dnaJ 2 OS=Corynebacterium diphtheriae GN=dnaJ2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3
Query:  186 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAY 386
            E +YY  LGVS +A+EAEIKKAY   AR+ HPD +P D  A + F+ + EAY V+ D  +R+ YD +
Sbjct:    9 EKDYYADLGVSSSATEAEIKKAYRKLARENHPDSHPGDAAAEERFKKVAEAYDVVGDETKRKEYDEF 75          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DJC16_RAT (DnaJ homolog subfamily C member 16 OS=Rattus norvegicus GN=Dnajc16 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 3
Query:  144 LVVIFGS*ESVMVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            L+V+    +S+   + + Y VLGVS TAS+A+IKKAY   AR+ HPDKN  DP A   F  + +AY++LS+  +R  YD YG +G
Sbjct:   13 LIVLVLILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKN-KDPGAEDKFIQISKAYEILSNEEKRTNYDHYGDAG 96          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJ5B_HUMAN (DnaJ homolog subfamily C member 5B OS=Homo sapiens GN=DNAJC5B PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 3
Query:  198 YDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            Y++LG+   AS  EIKK Y   A K HPDKNP+DP A + F+ +  A+ +L+D ++R  YD YG  G+
Sbjct:   21 YEILGLHKGASNEEIKKTYRKLALKHHPDKNPDDPAATEKFKEINNAHAILTDISKRSIYDKYGSLGL 88          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNJB7_MOUSE2.379e-1150.70DnaJ homolog subfamily B member 7 OS=Mus musculus ... [more]
DNJB7_HUMAN2.379e-1148.61DnaJ homolog subfamily B member 7 OS=Homo sapiens ... [more]
DNAJ_WOLWR2.379e-1146.67Chaperone protein dnaJ OS=Wolbachia sp. subsp. Dro... [more]
DNAJ_LACCB2.379e-1147.95Chaperone protein dnaJ OS=Lactobacillus casei (str... [more]
DNAJ_LACC32.379e-1147.95Chaperone protein dnaJ OS=Lactobacillus casei (str... [more]
DNAJ_DICT62.379e-1145.95Chaperone protein dnaJ OS=Dictyoglomus thermophilu... [more]
DNAJ_BUCAP2.379e-1136.89Chaperone protein dnaJ OS=Buchnera aphidicola subs... [more]
DNAJ2_CORDI2.379e-1149.25Chaperone protein dnaJ 2 OS=Corynebacterium diphth... [more]
DJC16_RAT2.379e-1145.88DnaJ homolog subfamily C member 16 OS=Rattus norve... [more]
DNJ5B_HUMAN3.108e-1145.59DnaJ homolog subfamily C member 5B OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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