FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIF2 (Chaperone protein dnaJ OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 404
            +YY+VL +S TA + EIKK+Y   A + HPD+NP+D  A + F+ +  AY+VLSDP +RQAYD +G +G++
Sbjct:    5 DYYEVLEISRTADDGEIKKSYRRLAMRYHPDRNPDDASAEERFKEISAAYEVLSDPQKRQAYDRFGHAGVN 75          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJB4_PONAB (DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 50/132 (37.88%), Postives = 71/132 (53.79%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA--------------IIDPAAIFAMLF-GSELFEDYIGQLAMASVASLDIFTEGEEFDA 542
            +YY +LG+   AS+ +IKKAY  +A K HPDKN   P A + F+ + EAY+VLSDP +R+ YD +G+ G+   A                DP A FA  F GS  FE + G+       S ++  +G+ F A
Sbjct:    4 DYYCILGIEKGASDEDIKKAYRKQALKFHPDKN-KSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEEGLKGGAGGTDGQGGTFRYTFHGDPHATFAAFFGGSNPFEIFFGRRMGGGRDSEEMEMDGDPFSA 134          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJB4_HUMAN (DnaJ homolog subfamily B member 4 OS=Homo sapiens GN=DNAJB4 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 50/132 (37.88%), Postives = 71/132 (53.79%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA--------------IIDPAAIFAMLF-GSELFEDYIGQLAMASVASLDIFTEGEEFDA 542
            +YY +LG+   AS+ +IKKAY  +A K HPDKN   P A + F+ + EAY+VLSDP +R+ YD +G+ G+   A                DP A FA  F GS  FE + G+       S ++  +G+ F A
Sbjct:    4 DYYCILGIEKGASDEDIKKAYRKQALKFHPDKN-KSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEEGLKGGAGGTDGQGGTFRYTFHGDPHATFAAFFGGSNPFEIFFGRRMGGGRDSEEMEIDGDPFSA 134          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJA2_RAT (DnaJ homolog subfamily A member 2 OS=Rattus norvegicus GN=Dnaja2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 44/97 (45.36%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAA--IFAMLFGSELF 464
            V +T+ YD+LGV P ASE E+KKAY   A++ HPDKNPN   A   F+ +  AY+VLS+P +R+ YD YG+ G+   +        IF+ +FG  LF
Sbjct:    4 VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPN---AGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLF 97          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJA2_MOUSE (DnaJ homolog subfamily A member 2 OS=Mus musculus GN=Dnaja2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 44/97 (45.36%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAA--IFAMLFGSELF 464
            V +T+ YD+LGV P ASE E+KKAY   A++ HPDKNPN   A   F+ +  AY+VLS+P +R+ YD YG+ G+   +        IF+ +FG  LF
Sbjct:    4 VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPN---AGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLF 97          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJA2_HUMAN (DnaJ homolog subfamily A member 2 OS=Homo sapiens GN=DNAJA2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 44/97 (45.36%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAA--IFAMLFGSELF 464
            V +T+ YD+LGV P ASE E+KKAY   A++ HPDKNPN   A   F+ +  AY+VLS+P +R+ YD YG+ G+   +        IF+ +FG  LF
Sbjct:    4 VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPN---AGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLF 97          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJA2_BOVIN (DnaJ homolog subfamily A member 2 OS=Bos taurus GN=DNAJA2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 44/97 (45.36%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAA--IFAMLFGSELF 464
            V +T+ YD+LGV P ASE E+KKAY   A++ HPDKNPN   A   F+ +  AY+VLS+P +R+ YD YG+ G+   +        IF+ +FG  LF
Sbjct:    4 VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPN---AGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLF 97          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PSESM (Chaperone protein dnaJ OS=Pseudomonas syringae pv. tomato GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPA-------------AIFAMLFGSELFEDYIG 479
            +YY+VLGV   +SEA++KKAY   A K HPD+NP+D  + + F+   EAY+VLSD ++R AYD YG +G      +DP+             A F+ +FG ++F D+ G
Sbjct:    5 DYYEVLGVERGSSEADLKKAYRRLAMKHHPDRNPDDKASEEMFKEANEAYEVLSDASKRAAYDQYGHAG------VDPSMGGGGGFGGGAGGANFSDIFG-DVFSDFFG 106          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPBP (Chaperone protein dnaJ OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 3
Query:  195 YYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA 413
            YY+VLGVS  AS+ EIK AY   A K HPDKN  D  A + F+   EAY+VL DP +RQAYD +GK+G++  A
Sbjct:    6 YYEVLGVSKGASDDEIKSAYRKLAIKYHPDKNKGDKEAEEKFKEATEAYEVLRDPQKRQAYDQFGKAGVNAGA 78          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPBA (Chaperone protein dnaJ OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 3
Query:  195 YYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA 413
            YY+VLGVS  AS+ EIK AY   A K HPDKN  D  A + F+   EAY+VL DP +RQAYD +GK+G++  A
Sbjct:    6 YYEVLGVSKGASDDEIKSAYRKLAIKYHPDKNKGDKEAEEKFKEATEAYEVLRDPQKRQAYDQFGKAGVNAGA 78          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_ACIF27.903e-1549.30Chaperone protein dnaJ OS=Acidithiobacillus ferroo... [more]
DNJB4_PONAB1.032e-1437.88DnaJ homolog subfamily B member 4 OS=Pongo abelii ... [more]
DNJB4_HUMAN1.032e-1437.88DnaJ homolog subfamily B member 4 OS=Homo sapiens ... [more]
DNJA2_RAT1.032e-1445.36DnaJ homolog subfamily A member 2 OS=Rattus norveg... [more]
DNJA2_MOUSE1.032e-1445.36DnaJ homolog subfamily A member 2 OS=Mus musculus ... [more]
DNJA2_HUMAN1.032e-1445.36DnaJ homolog subfamily A member 2 OS=Homo sapiens ... [more]
DNJA2_BOVIN1.032e-1445.36DnaJ homolog subfamily A member 2 OS=Bos taurus GN... [more]
DNAJ_PSESM1.032e-1441.28Chaperone protein dnaJ OS=Pseudomonas syringae pv.... [more]
DNAJ_LEPBP1.032e-1454.79Chaperone protein dnaJ OS=Leptospira biflexa serov... [more]
DNAJ_LEPBA1.032e-1454.79Chaperone protein dnaJ OS=Leptospira biflexa serov... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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