FC920418

Overview
NameFC920418
Unique NameFC920418
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15452 contig Ccv1_Contig15452:3..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920418 vs. ExPASy Swiss-Prot
Match: CATA2_CAEEL (Catalase-2 OS=Caenorhabditis elegans GN=ctl-1 PE=2 SV=3)

HSP 1 Score: 209.534 bits (532), Expect = 1.273e-53
Identity = 97/179 (54.19%), Postives = 133/179 (74.30%), Query Frame = 2
Query:  137 MTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVGI 673
            +TT+ GAP+++    LT G RGP+L++D   ++++AHF RERIPERVVHA+GA A G+FE THDI+    AD+F   G QTP++VRFSTV  E GS +T+RDPRGF++KFYT EGNWDL+GN+ P+FFIRDAI FP+ IHA K NP++H+++   + DF  + PES+    + + D GI
Sbjct:   23 ITTSNGAPIYSKTAVLTAGRRGPMLMQDVVYMDEMAHFDRERIPERVVHAKGAGAHGYFEVTHDITKYCKADMFNKVGKQTPLLVRFSTVAGESGSADTVRDPRGFSLKFYTEEGNWDLVGNNTPIFFIRDAIHFPNFIHALKRNPQTHMRDPNALFDFWMNRPESIHQVMFLYSDRGI 201          
BLAST of FC920418 vs. ExPASy Swiss-Prot
Match: CATA1_CAEEL (Peroxisomal catalase 1 OS=Caenorhabditis elegans GN=ctl-2 PE=2 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 1.663e-53
Identity = 98/179 (54.75%), Postives = 130/179 (72.63%), Query Frame = 2
Query:  137 MTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVGI 673
            +TT+ GAP+++    LT G RGP+L++D   ++++AHF RERIPERVVHA+GA A G+FE THDIS    AD+F   G QTP+++RFSTV  E GS +T RDPRGFA+KFYT EGNWDL+GN+ P+FFIRD I FP+ IH  K NP++H+++   I DF  H PE+L    + F D G+
Sbjct:   23 ITTSNGAPIYSKTAVLTAGRRGPMLMQDVVYMDEMAHFDRERIPERVVHAKGAGAHGYFEVTHDISKYCKADIFNKVGKQTPLLIRFSTVGGESGSADTARDPRGFAIKFYTEEGNWDLVGNNTPIFFIRDPIHFPNFIHTQKRNPQTHLKDPNMIFDFWLHRPEALHQVMFLFSDRGL 201          
BLAST of FC920418 vs. ExPASy Swiss-Prot
Match: CATB_PSEAE (Catalase OS=Pseudomonas aeruginosa GN=katB PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.837e-53
Identity = 104/188 (55.32%), Postives = 133/188 (70.74%), Query Frame = 2
Query:  107 LPSTTHNAPFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVG 670
            L S +  A  +T + GAPV ++ +S T G  G VLL+D  L++KL  F RERIPERVVHARG  A G F  + DIS L+ A +FR  G +TPV VRFS V+H   SPETLRDPRGFA KFYT +GNWDL+GN+ P FFIRDAIKFPD++HAFKP+P+S++ +  R  DF SH+PE+  T +  + + G
Sbjct:   23 LLSLSVQAATLTRDNGAPVGDNQNSQTAGPNGSVLLQDVQLLQKLQRFDRERIPERVVHARGTGAHGEFVASADISDLSMAKVFRK-GEKTPVFVRFSAVVHGNHSPETLRDPRGFATKFYTADGNWDLVGNNFPTFFIRDAIKFPDMVHAFKPDPRSNLDDDSRRFDFFSHVPEATRTLTLLYSNEG 209          
BLAST of FC920418 vs. ExPASy Swiss-Prot
Match: CATA_BOVIN (Catalase OS=Bos taurus GN=CAT PE=1 SV=3)

HSP 1 Score: 206.453 bits (524), Expect = 1.078e-52
Identity = 100/179 (55.87%), Postives = 131/179 (73.18%), Query Frame = 2
Query:  137 MTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVGI 673
            +TT  G PV +  +SLTVG RGP+L++D    +++AHF RERIPERVVHA+GA A G+FE THDI+  + A +F   G +TP+ VRFSTV  E GS +T+RDPRGFAVKFYT +GNWDL+GN+ P+FFIRDA+ FP  IH+ K NP++H+++   + DF S  PESL   S+ F D GI
Sbjct:   27 LTTGGGNPVGDKLNSLTVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGI 205          
BLAST of FC920418 vs. ExPASy Swiss-Prot
Match: CATA_DEIRA (Catalase OS=Deinococcus radiodurans GN=katA PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.838e-52
Identity = 103/184 (55.98%), Postives = 129/184 (70.11%), Query Frame = 2
Query:  137 MTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECT-----HDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVGI 673
            +TT  G PV ++ +S TVGSRGP+ LE+Y  +EKL+HF RERIPERVVHARG  A G F  T       +S  T A LF+  G +TPV VRFSTV H   SPETLRDPRGFAVKFYT +GNWDL+GN++ +FFIRDA+KFPD+IH+ KP+P ++IQ   RI DF +  PE+    +  +   GI
Sbjct:   33 LTTRQGHPVHDNQNSRTVGSRGPMTLENYQFIEKLSHFDRERIPERVVHARGVGAHGVFRATGKVGDEPVSKYTRAKLFQEDGKETPVFVRFSTVGHGTHSPETLRDPRGFAVKFYTEDGNWDLVGNNLKIFFIRDALKFPDLIHSQKPSPTTNIQSQERIFDFFAGSPEATHMITLLYSPWGI 216          
BLAST of FC920418 vs. ExPASy Swiss-Prot
Match: CATB_PSESY (Catalase OS=Pseudomonas syringae pv. syringae GN=katB PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 4.095e-52
Identity = 99/185 (53.51%), Postives = 133/185 (71.89%), Query Frame = 2
Query:  116 TTHNAPFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVG 670
            T +    +T + GA V ++ +S T G++GPVLL+D  L++KL  F RERIPERVVHARG   KG F  + DIS L+ A +F++ G +TPV VRFS+V+H   SPETLRDP GFA KFYT +GNWDL+GN+ P FFIRDAIKFPD++HAFKP+P++++    R  DF SH+PE+  T +  + + G
Sbjct:   23 TVYATDTLTRDNGAVVGDNQNSQTAGAQGPVLLQDVQLLQKLQRFDRERIPERVVHARGTGVKGEFTASADISDLSKATVFKS-GEKTPVFVRFSSVVHGNHSPETLRDPHGFATKFYTADGNWDLVGNNFPTFFIRDAIKFPDMVHAFKPDPRTNLDNDSRRFDFFSHVPEATRTLTLLYSNEG 206          
BLAST of FC920418 vs. ExPASy Swiss-Prot
Match: CATA_PIG (Catalase OS=Sus scrofa GN=CAT PE=1 SV=4)

HSP 1 Score: 204.142 bits (518), Expect = 5.348e-52
Identity = 98/179 (54.75%), Postives = 130/179 (72.63%), Query Frame = 2
Query:  137 MTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVGI 673
            +TT +G P+ +  + LT G RGP+L++D    +++AHF RERIPERVVHA+GA A G+FE THDI+  + A +F   G +TP+ VRFSTV  E GS +T+RDPRGFAVKFYT +GNWDL+GN+ P+FFIRDAI FP  IH+ K NP++H+++   + DF S  PESL   S+ F D GI
Sbjct:   27 LTTGSGNPIGDKLNILTAGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITRFSKAKVFEHVGKRTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDAILFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGI 205          
BLAST of FC920418 vs. ExPASy Swiss-Prot
Match: CATA_MOUSE (Catalase OS=Mus musculus GN=Cat PE=1 SV=3)

HSP 1 Score: 204.142 bits (518), Expect = 5.348e-52
Identity = 98/179 (54.75%), Postives = 130/179 (72.63%), Query Frame = 2
Query:  137 MTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVGI 673
            +TT  G P+ +  + +T GSRGP+L++D    +++AHF RERIPERVVHA+GA A G+FE THDI+  + A +F   G +TP+ VRFSTV  E GS +T+RDPRGFAVKFYT +GNWDL+GN+ P+FFIRDAI FP  IH+ K NP++H+++   + DF S  PESL   S+ F D GI
Sbjct:   27 LTTGGGNPIGDKLNIMTAGSRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDAILFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGI 205          
BLAST of FC920418 vs. ExPASy Swiss-Prot
Match: CATA_HUMAN (Catalase OS=Homo sapiens GN=CAT PE=1 SV=3)

HSP 1 Score: 204.142 bits (518), Expect = 5.348e-52
Identity = 100/182 (54.95%), Postives = 131/182 (71.98%), Query Frame = 2
Query:  128 APFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVGI 673
            A  +TT AG PV +  + +TVG RGP+L++D    +++AHF RERIPERVVHA+GA A G+FE THDI+  + A +F   G +TP+ VRFSTV  E GS +T+RDPRGFAVKFYT +GNWDL+GN+ P+FFIRD I FP  IH+ K NP++H+++   + DF S  PESL   S+ F D GI
Sbjct:   24 ADVLTTGAGNPVGDKLNVITVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGI 205          
BLAST of FC920418 vs. ExPASy Swiss-Prot
Match: CATA_ONCVE (Catalase OS=Onchocerca volvulus endobacterium GN=cat PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.985e-52
Identity = 100/179 (55.87%), Postives = 128/179 (71.51%), Query Frame = 2
Query:  137 MTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVGI 673
            +TT +G PV ++ +S + G RGP+LL+D+HL+EKLAHF RE IPER VHA+G+ A G F  T DI+  T A LF + G QTP  +RFSTV  ERGS +T RDPRGFA+KFYT EGNWD++GN+ PVFFIRD +KFPD IH  K  P+S+++    + DF SH PE+L   +  F D GI
Sbjct:    7 LTTASGPPVADNQNSRSAGPRGPLLLDDFHLIEKLAHFNRENIPERRVHAKGSGAYGTFTVTQDITQYTSAKLFDSVGKQTPTFLRFSTVGGERGSADTERDPRGFALKFYTEEGNWDIVGNNTPVFFIRDPLKFPDFIHTQKRLPQSNLKSAQMMWDFWSHSPEALHQVTILFSDRGI 185          
The following BLAST results are available for this feature:
BLAST of FC920418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
CATA2_CAEEL1.273e-5354.19Catalase-2 OS=Caenorhabditis elegans GN=ctl-1 PE=2... [more]
CATA1_CAEEL1.663e-5354.75Peroxisomal catalase 1 OS=Caenorhabditis elegans G... [more]
CATB_PSEAE4.837e-5355.32Catalase OS=Pseudomonas aeruginosa GN=katB PE=3 SV... [more]
CATA_BOVIN1.078e-5255.87Catalase OS=Bos taurus GN=CAT PE=1 SV=3[more]
CATA_DEIRA1.838e-5255.98Catalase OS=Deinococcus radiodurans GN=katA PE=1 S... [more]
CATB_PSESY4.095e-5253.51Catalase OS=Pseudomonas syringae pv. syringae GN=k... [more]
CATA_PIG5.348e-5254.75Catalase OS=Sus scrofa GN=CAT PE=1 SV=4[more]
CATA_MOUSE5.348e-5254.75Catalase OS=Mus musculus GN=Cat PE=1 SV=3[more]
CATA_HUMAN5.348e-5254.95Catalase OS=Homo sapiens GN=CAT PE=1 SV=3[more]
CATA_ONCVE6.985e-5255.87Catalase OS=Onchocerca volvulus endobacterium GN=c... [more]

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Properties
Property NameValue
Genbank descriptionC32008B05EF RVDevelop1 Citrus clementina cDNA clone C32008B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920418 ID=FC920418; Name=FC920418; organism=Citrus clementina; type=EST; length=673bp
ACACTCTTCTTGAGTCTCGACTCAACTCCACTTCTCCTTTCTTACGATAA
TAATAACAGTAGCAAAATCTTCAGCAAGAAATATCGCCATGGATCCCTAC
AAATTGCTTCCGTCAACTACTCACAATGCCCCCTTTATGACTACAAATGC
CGGCGCTCCTGTCTGGAACGACAATCACTCCTTGACTGTTGGAAGTAGAG
GTCCTGTCCTTCTTGAGGATTATCATCTGGTGGAGAAACTAGCTCATTTT
GCCAGGGAGAGGATTCCAGAACGCGTCGTCCATGCTAGGGGAGCCAGTGC
TAAGGGTTTCTTTGAGTGCACCCATGATATTTCTCACCTTACTTGTGCTG
ATCTTTTTCGAGCTCCAGGGGTTCAGACACCTGTCATTGTTCGCTTCTCC
ACTGTTATCCATGAGCGGGGCAGCCCTGAGACACTCAGGGATCCTCGAGG
ATTTGCAGTCAAGTTTTACACCAGAGAGGGTAATTGGGATCTTCTGGGTA
ACAGTATCCCTGTTTTTTTCATCCGTGATGCAATCAAATTCCCAGATGTG
ATCCATGCTTTTAAACCTAATCCAAAGTCTCACATCCAAGAGTACTGGAG
GATCCTCGACTTCTGCTCCCACCTTCCTGAAAGCTTGTCCACATTTTCCT
GGTTCTTTGATGATGTGGGTATT
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