FC920423

Overview
NameFC920423
Unique NameFC920423
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14170 contig Ccv1_Contig14170:4..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920423 vs. ExPASy Swiss-Prot
Match: GRIP4_ARATH (GDSL esterase/lipase 4 OS=Arabidopsis thaliana GN=GLIP4 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.843e-13
Identity = 61/204 (29.90%), Postives = 90/204 (44.12%), Query Frame = 1
Query:   37 FSSQIFLMFVLLPSLFSALTAATNTLTPRPFNKIYAFGDSFTDTGNTKTATGPSGFGHVSTSPYGSTYFHHPTNRYSDGRLVIDFVTQSLSLPFLPPYL---HNKDNATYGVNFAVGGATAVNHAF-FVKNNLSLDITPQSIQTQLIWFNKFLESKGCKEAESSGPQCQAAFDDALFWVGEIGVNDYAYTL--GSSVTSDTIRK 630
            F+S I ++F+   SL     +    L       ++AFGDS  + GN       S F   +  PYG T F  PT R SDGR++IDF+ +   LP +PP L   ++    TYG+NFA   A      F     NLS D+  Q         N F   +    +     + +     A++ +  IG NDY Y     +S  S+T ++
Sbjct:    6 FNSIIIILFICTISLSIVSISCKEDLKTNQA-ALFAFGDSLFEAGNNNYFDSISSF-RSNFWPYGKTTFKFPTGRVSDGRIMIDFIAEYAWLPLIPPNLQPGYSNSQLTYGLNFATTAAGVFAGTFPGSVTNLSKDLGTQ--------LNNFKNVEKTLRSNLGDAEARRVISKAVY-LFHIGANDYQYPFFANTSTFSNTTKE 198          
BLAST of FC920423 vs. ExPASy Swiss-Prot
Match: GDL61_ARATH (GDSL esterase/lipase At4g01130 OS=Arabidopsis thaliana GN=At4g01130 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 59/171 (34.50%), Postives = 81/171 (47.37%), Query Frame = 1
Query:  127 FNKIYAFGDSFTDTGNTKTATGPSGFGHVSTSPYGSTYFHHPTNRYSDGRLVIDFVTQSLSLPFLPPYLHN-KDNATYGVNFAVGGATAV--NHAFFVKNNLSLDITPQSIQTQLIWFNKF---------LESKGCKEAESSGPQCQAAFDDALFWVGEIGVNDYAYTLGS 603
            F  I+ FGDS +DTG    A          + P+G TYF  P  R SDGRL+IDF+ +SL +PFL PYL +   +  +G NFA   +T +  N + FV       I+P S+  QL    +F         L+  G K   S     +  F  +L+    IG ND+   L S
Sbjct:   32 FEAIFNFGDSNSDTGGFWAAFP------AQSGPWGMTYFKKPAGRASDGRLIIDFLAKSLGMPFLSPYLQSIGSDFRHGANFATLASTVLLPNTSLFVSG-----ISPFSLAIQLNQMKQFKVNVDESHSLDRPGLKILPS-----KIVFGKSLY-TFYIGQNDFTSNLAS 185          
BLAST of FC920423 vs. ExPASy Swiss-Prot
Match: GDL60_ARATH (GDSL esterase/lipase At3g62280 OS=Arabidopsis thaliana GN=At3g62280 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 49/127 (38.58%), Postives = 66/127 (51.97%), Query Frame = 1
Query:   28 FGVFSSQIFLMFVLLPSLFSALTAATNTLTPRPFNK---IYAFGDSFTDTGNTKTATG-PSGFGHVSTSPYGSTYFHHPTNRYSDGRLVIDFVTQSLSLPFLPPYLHN-KDNATYGVNFAVGGATAV 393
            + V S Q F + + L     +L   +N+ T    NK   +  FGDS +DTG      G P G       P+G T+FH  T R  DGRL++DF  + L + +L PYL +   N   GVNFAV GATA+
Sbjct:    3 YTVSSLQCFFLVLCL-----SLLVCSNSETSYKSNKKPILINFGDSNSDTGGVLAGVGLPIGL------PHGITFFHRGTGRLGDGRLIVDFYCEHLKMTYLSPYLDSLSPNFKRGVNFAVSGATAL 118          
BLAST of FC920423 vs. ExPASy Swiss-Prot
Match: LIP4_ARATH (GDSL esterase/lipase LIP-4 OS=Arabidopsis thaliana GN=LIP4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 66/198 (33.33%), Postives = 92/198 (46.46%), Query Frame = 1
Query:   19 TNSFGVFSSQIFLMFVLLPSLFSALTAATNTLTPRPFNKIYAFGDSFTDTGNTKTATG-PSGFGHVSTSPYGSTYFHHPTNRYSDGRLVIDFVTQSLSLPFLPPYLHNKDNATY--GVNFAVGGATAVNHAFFVKNNLSLDITPQSIQTQLIWFNKFLESKGCKEAESSGPQ-----CQAAFDDALFWVGEIGVNDYA 588
            +N+F  F    F+  V L  L     +   + T RP   I+ FGDS +DTG      G P GF      P G  +F   T R SDGRL+IDF+ QSL+   L PYL +     +  G NFA+ G+  +      KN       P S+  Q+  F+ F +S+  + A SS            F +AL+ + +IG ND A
Sbjct:    8 SNTFSFF----FITLVSLALLILRQPSRAASCTARPV--IFNFGDSNSDTGGLVAGLGYPIGF------PNGRLFFRRSTGRLSDGRLLIDFLCQSLNTSLLRPYLDSLGRTRFQNGANFAIAGSPTL-----PKN------VPFSLNIQVKQFSHF-KSRSLELASSSNSLKGMFISNNGFKNALYMI-DIGQNDIA 180          
BLAST of FC920423 vs. ExPASy Swiss-Prot
Match: GDL54_ARATH (GDSL esterase/lipase At3g27950 OS=Arabidopsis thaliana GN=At3g27950 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 42/113 (37.17%), Postives = 62/113 (54.87%), Query Frame = 1
Query:   49 IFLMFVLLPSLFSALTAATNTLTPRPFNKIYAFGDSFTDTGNTKTATGPSGFGHVSTSPYGSTYFHHPTNRYSDGRLVIDFVTQSLSLPFLPPYLHNKD-NATYGVNFAVGGA 384
            I ++ +      SAL+++ N      F  ++ FGDS +DTG    A G          P G  +F     R+SDGRL+IDF+T++L+LP+L PYL +   N  +G NFA GG+
Sbjct:   10 IIVLLLGFTEKLSALSSSCN------FPAVFNFGDSNSDTGAISAAIGEV------PPPNGVAFFGRSAGRHSDGRLIIDFITENLTLPYLTPYLDSVGANYRHGANFATGGS 110          
BLAST of FC920423 vs. ExPASy Swiss-Prot
Match: GDL2_ARATH (GDSL esterase/lipase At1g09390 OS=Arabidopsis thaliana GN=At1g09390 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 55/173 (31.79%), Postives = 86/173 (49.71%), Query Frame = 1
Query:  136 IYAFGDSFTDTGNTKTATGPSGFGHVSTSPYGSTYFHHPTNRYSDGRLVIDFVTQSLSLPFLPPYLHNKDNATY--GVNFAVGGATAVNHAFFVKNNLSLDITPQSIQTQLIWFNKFLESKGCKEAESSGPQ-----CQAAFDDALFWVGEIGVNDYAYTLGSSVTSDTIRKL 633
            I+ FGDS +DTG        +G G+    P G ++F   T R SDGRLVIDF+ QSL+   L PYL +   + +  G NFA+ G++ +               P ++  QL+ F  F +S+  + A  S P       ++ F +AL+ + +IG ND A +    ++   + KL
Sbjct:   38 IFNFGDSNSDTGGLV-----AGLGYSIGLPNGRSFFQRSTGRLSDGRLVIDFLCQSLNTSLLNPYLDSLVGSKFQNGANFAIVGSSTLPR-----------YVPFALNIQLMQFLHF-KSRALELASISDPLKEMMIGESGFRNALYMI-DIGQNDIADSFSKGLSYSRVVKL 192          
BLAST of FC920423 vs. ExPASy Swiss-Prot
Match: GLIP3_ARATH (GDSL esterase/lipase 3 OS=Arabidopsis thaliana GN=GLIP3 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 62/207 (29.95%), Postives = 92/207 (44.44%), Query Frame = 1
Query:   49 IFLMFVLLPSLFSALTAATNTLTPRPFNKIYAFGDSFTDTGNTKTATGPSGFGHVSTSPYGSTYFHHPTNRYSDGRLVIDFVTQSLSLPFLPPYL---HNKDNATYGVNFAVGGATAVNHAFFVKNNLSLDITPQSIQTQLIWFNKFLESKGCKEAESSGPQCQAAFDDALFWVGEIGVNDYAYTLGSSVTSDTIRKLAIPSFTNFL 660
            IF ++ ++ S+ S      N L       ++ FGDS  D GN       S F   +  PYG T F  PT R SDG        +   LP +PP L   +  +  TYGV+FA  GA A+  +F     L + I   ++ TQL   N F + +    +E    + +  F  A++ +  IG NDY Y    S  S T +  +   F +F+
Sbjct:    8 IFFVYTIILSIGSINCIDNNNLVTNQA-ALFVFGDSLFDAGNNNYINTVSSF-RSNIWPYGQTNFKFPTGRLSDG-------PEKAWLPSIPPNLQPNNGNNQFTYGVSFASAGAGALAESF-----LGMVI---NLGTQL---NNFKDVEKSLRSELGDAETKRVFSRAVY-LFHIGANDYFYPF--SANSSTFKSNSKEKFVDFV 191          
The following BLAST results are available for this feature:
BLAST of FC920423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
GRIP4_ARATH2.843e-1329.90GDSL esterase/lipase 4 OS=Arabidopsis thaliana GN=... [more]
GDL61_ARATH1.080e-1234.50GDSL esterase/lipase At4g01130 OS=Arabidopsis thal... [more]
GDL60_ARATH1.411e-1238.58GDSL esterase/lipase At3g62280 OS=Arabidopsis thal... [more]
LIP4_ARATH4.105e-1233.33GDSL esterase/lipase LIP-4 OS=Arabidopsis thaliana... [more]
GDL54_ARATH4.105e-1237.17GDSL esterase/lipase At3g27950 OS=Arabidopsis thal... [more]
GDL2_ARATH9.146e-1231.79GDSL esterase/lipase At1g09390 OS=Arabidopsis thal... [more]
GLIP3_ARATH5.928e-1129.95GDSL esterase/lipase 3 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32008B10EF RVDevelop1 Citrus clementina cDNA clone C32008B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920423 ID=FC920423; Name=FC920423; organism=Citrus clementina; type=EST; length=669bp
AGGCTTAGTGAGACAATGACTAATTCCTTCGGAGTTTTTTCCTCCCAAAT
TTTCCTCATGTTCGTACTCTTACCCTCCCTGTTTTCTGCCCTTACCGCTG
CAACCAACACATTAACCCCACGTCCATTTAATAAGATCTATGCCTTCGGT
GACTCATTCACCGACACTGGTAACACCAAGACTGCGACTGGCCCTAGTGG
CTTTGGCCATGTCTCCACCTCTCCATACGGCAGCACATATTTCCACCACC
CCACCAACCGATACTCCGATGGACGGCTGGTGATTGACTTTGTAACTCAA
TCCCTGTCACTACCATTCTTGCCACCTTACCTTCACAACAAAGATAATGC
AACATATGGTGTCAACTTTGCTGTTGGCGGTGCCACTGCTGTAAATCATG
CTTTCTTTGTCAAAAACAATCTCAGTCTTGACATTACTCCTCAGTCAATC
CAAACTCAGCTCATTTGGTTCAACAAGTTCTTGGAGAGCAAGGGATGTAA
AGAAGCAGAGTCCTCAGGGCCTCAGTGCCAGGCAGCTTTCGATGATGCAT
TGTTCTGGGTTGGTGAAATTGGAGTCAACGATTATGCGTACACTCTAGGA
TCTTCTGTTACAAGTGACACTATCCGAAAACTCGCTATCCCTAGTTTTAC
AAATTTTCTGCAGGCGTTG
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