FC920427

Overview
NameFC920427
Unique NameFC920427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC18_ORYSJ (Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC18 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 42/152 (27.63%), Postives = 73/152 (48.03%), Query Frame = 3
Query:  210 EVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGV-LGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQ 662
            ++ ++NG+FPGP +DV   D ++++VIN+L     + W+G++Q ++ W DG    T CPI P    TY+F    Q+G+ ++       RA     G                  D  ++IG+W++ +   L + +  G     P    ING+
Sbjct:   51 KIYVVNGRFPGPTVDVTEGDTVVVHVINRLPHGLTIHWHGVRQMRSCWADGAGYVTECPIHPGGEKTYRFNVTGQVGTLWWHAHVTCLRAT--INGAFIIRPRNGKYPFLTPAKDVPIIIGEWWELDLIELDRRMLDGNFDDNPLSATINGK 200          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC18_ORYSI (Putative laccase-18 OS=Oryza sativa subsp. indica GN=LAC18 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 42/152 (27.63%), Postives = 73/152 (48.03%), Query Frame = 3
Query:  210 EVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGV-LGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQ 662
            ++ ++NG+FPGP +DV   D ++++VIN+L     + W+G++Q ++ W DG    T CPI P    TY+F    Q+G+ ++       RA     G                  D  ++IG+W++ +   L + +  G     P    ING+
Sbjct:   51 KIYVVNGRFPGPTVDVTEGDTVVVHVINRLPHGLTIHWHGVRQMRSCWADGAGYVTECPIHPGGEKTYRFNVTGQVGTLWWHAHVTCLRAT--INGAFIIRPRDGKYPFPTPAKDVPIIIGEWWELDLIELDRRMLDGNFDDNPLSATINGK 200          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC17_ARATH (Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 46/171 (26.90%), Postives = 77/171 (45.03%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTN-HKILRQTLDSGKSLPFPDGVLING 659
            R YT  +    ++ L   + ++ +NGQFPGP+L     D +++ V+N++     L W+GI+Q ++ W DG    T CPI    +Y Y +    Q G+ +Y       R+   YG +                 +  ++ G+WF  +   I+RQ   +G      D   ING
Sbjct:   25 RHYTLEIKMQNVTRLCHTKSLVSVNGQFPGPKLIAREGDQVLIKVVNQVPNNISLHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNYTIVGQRGTLWYHAHISWLRST-VYGPLIILPKRGVPYPFAKPHKEVPMIFGEWFNADTEAIIRQATQTGGGPNVSDAYTING 194          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC23_ORYSJ (Laccase-23 OS=Oryza sativa subsp. japonica GN=LAC23 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 46/174 (26.44%), Postives = 83/174 (47.70%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGG--INXXXXXXXXXXXXXXDGDFTLLIGDWFKTNH-KILRQTLDSGKSLPFPDGVLINGQ 662
            +++ + +   T+  L   Q ++ +NGQFPGP L++   D++I+N+IN+      L W+G++Q +  W DG    T CP+ P  +Y Y+F    Q G+ ++   +   RA   YG   I                    +L+G+W+  N   ++R    +G +    D + +N Q
Sbjct:   25 QYHEFVIRETTVKRLCKSQSIMTVNGQFPGPTLEIKEGDSLIINLINRGRYNVTLHWHGVRQMRTGWSDGPEYVTQCPVRPGQSYRYRFTVAAQEGTLWWHAHSSWLRAT-VYGALLIRPRDGTSYPFHVQPTRELAPILLGEWWDMNPVDVVRAATRTGAAPNISDALTVNAQ 197          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC21_ORYSJ (Laccase-21 OS=Oryza sativa subsp. japonica GN=LAC21 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 49/181 (27.07%), Postives = 84/181 (46.41%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTN-HKILRQTLDSGKSLPFPDGVLINGQGHTTFTVIR 689
            R Y + +T      L   + V+ +NGQFPGP +     D +I+NV N  ++   + W+G+ Q +N W DG    T CPI P+  +TY+    ++ G+ ++   +   RA    G I               D +  +++G+W+K + + +L +    G+ +   D   INGQ    F   R
Sbjct:   34 RHYDFFITETNYRRLCHEKSVLTVNGQFPGPTIYARKGDLVIVNVYNHGNKNITIHWHGVDQPRNPWSDGPEFITQCPIRPDGKFTYQVIMSEEEGTLWWHAHSDFDRAT-VLGAIVVHPKHGDTFPFKRPDKEIPIILGEWWKNDVNHLLEEMKRIGEDVKPSDANTINGQPGDMFPCSR 213          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC1_AGABI (Laccase-1 OS=Agaricus bisporus GN=lcc1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 48/178 (26.97%), Postives = 82/178 (46.07%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFL-----LTWNGIKQRKNSWQDGVLGTN-CPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLL-IGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQG 665
            R + + + +  L+P G  ++ ++ING+FPG  + V   D++ + + NKL  P +     + W+G  Q + S QDG    N CP PPN+ +TY+F   +Q G+++Y          G  G                 D + T++ + +W+            S   +P  D  LING+G
Sbjct:   22 RTFDFDLVNTRLAPDGFERDTVVINGEFPGTLIQVNKGDSVRIPLHNKLTSPTMRRSVSIHWHGFFQARTSGQDGPSFVNQCPQPPNTTFTYEFSVAEQSGTFWYHSHLSTQYCDGLRGAFIVYDPRDPLRHLYDVDDESTVITLAEWYHILAPDATNEFFSSGIIPVQDSGLINGKG 199          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC2_AGABI (Laccase-2 OS=Agaricus bisporus GN=lcc2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 47/176 (26.70%), Postives = 81/176 (46.02%), Query Frame = 3
Query:  159 YTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFL-----LTWNGIKQRKNSWQDGVLGTN-CPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLL-IGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQG 665
            + + + +  L+P G  ++ ++ING+FPG  + V   D++ + V NKL    +     + W+G  Q + S QDG    N CP PPN+ +TY+F   D+ G+++Y          G  G                 D + T++ + +W+      +     S   +P  D  LING+G
Sbjct:   24 FNFDLVNTRLAPDGFERDTVVINGEFPGTLVQVNKGDSVRIPVNNKLTSSTMRRSVSIHWHGFFQARTSGQDGPAFVNQCPQPPNTTFTYEFSVADESGTFWYHSHLSTQYCDGLRGAFVVYDPEDPLGHLYDVDDETTVITLAEWYHVLAPDINNEFFSSGIIPVQDSGLINGKG 199          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC14_ARATH (Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 47/171 (27.49%), Postives = 78/171 (45.61%), Query Frame = 3
Query:  159 YTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNH--KILRQTLDSGKSLPFPDGVLINGQ 662
            +T+ + S   + L    +++ +NG+FPGP L     D +I+NVIN  +    L W+G +Q +N W DG    T CPI P  +Y Y+   K + G+ ++   +   RA   +G                   +  L++G+W+K  +   I  +   +G      D   INGQ
Sbjct:   38 HTFKIKSKAYTRLCNTNKILTVNGEFPGPTLKAYRGDKLIVNVINNANYNITLHWHGARQIRNPWSDGPEYVTQCPIRPGESYVYRIDLKVEEGTIWWHAHSQWARAT-VHGAFIVYPKRGSSYPFPKPHREIPLILGEWWKKENIMHIPGKANKTGGEPAISDSYTINGQ 207          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC9_ARATH (Laccase-9 OS=Arabidopsis thaliana GN=LAC9 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 45/172 (26.16%), Postives = 82/172 (47.67%), Query Frame = 3
Query:  186 LSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGV-LGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQGHTTFTVIRKKL 698
            ++PL   Q + ++NG  PGP ++V   D ++++VINK      + W+G+ Q K+ W DG  + T CPI P++N+TY+F    Q G+  +    +  RA   +G +                 +  L+   W+ T+ ++L       +  P  D  LING    ++   + ++
Sbjct:   39 VTPLCKEQMIPIVNGSLPGPTINVREGDTLVVHVINKSTYNVTIHWHGVFQLKSVWMDGANMITQCPIQPSNNFTYQFDITGQEGTLLWHAHVVNLRAT-IHGALIIRPRSGRPYPFPKPYKEVPLIFQQWWDTDVRLLEL-----RPAPVSDAYLINGLAGDSYPCSKNRM 204          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC11_ARATH (Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 51/190 (26.84%), Postives = 79/190 (41.58%), Query Frame = 3
Query:  141 DDPYRFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWF-KTNHKILRQTLDSGKSLPFPDGVLINGQGHTTFTVIRKKLHV 704
            D   + Y + V    +S +   + ++ +NG FPGP +     D +I+NV N +     + W+G+KQ +N W DG    T CPI    +Y Y F    Q G+ ++    L  RA   YG I                 +  +++G+W+ K     + Q    G   P  D   ING+    F    K   V
Sbjct:   22 DAAVKKYQFDVQVKNISRICNAKPIVTVNGMFPGPTVYAREGDRVIINVTNHVQYNMSIHWHGLKQYRNGWADGPAYITQCPIQTGQSYLYDFNVTGQRGTLWWHAHILWLRAT-VYGAIVILPAPGKPYPFPQPYQESNIILGEWWNKDVETAVNQANQLGAPPPMSDAHTINGKPGPLFPCSEKHTFV 210          
The following BLAST results are available for this feature:
BLAST of FC920427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
LAC18_ORYSJ2.829e-1427.63Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC18_ORYSI2.829e-1427.63Putative laccase-18 OS=Oryza sativa subsp. indica ... [more]
LAC17_ARATH2.829e-1426.90Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 S... [more]
LAC23_ORYSJ3.694e-1426.44Laccase-23 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC21_ORYSJ3.694e-1427.07Laccase-21 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC1_AGABI4.825e-1426.97Laccase-1 OS=Agaricus bisporus GN=lcc1 PE=1 SV=1[more]
LAC2_AGABI6.302e-1426.70Laccase-2 OS=Agaricus bisporus GN=lcc2 PE=1 SV=1[more]
LAC14_ARATH6.302e-1427.49Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 S... [more]
LAC9_ARATH1.075e-1326.16Laccase-9 OS=Arabidopsis thaliana GN=LAC9 PE=2 SV=... [more]
LAC11_ARATH1.075e-1326.84Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC32008C04EF RVDevelop1 Citrus clementina cDNA clone C32008C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920427 ID=FC920427; Name=FC920427; organism=Citrus clementina; type=EST; length=705bp
GGCGGCCAGAAGCTTAGATTAGATTCCATTAGACTCTCAACTCGACTCGA
CTCAACTTTGAAGCAATGGCGAGAACACTCTTGCTGCCGCTACTGGTCTG
TGTAGTTTTGGCTGCCTTGAGTGTTGCTTTGGTGAAGGCAGACGACCCGT
ATAGATTTTACACTTGGACTGTCACTTCTGGCACTTTGTCTCCTCTTGGC
GTTCCCCAAGAGGTTATTCTTATTAATGGTCAGTTTCCCGGTCCTAGATT
GGATGTGGTAACCAATGATAATATCATACTCAATGTCATTAACAAGCTAG
ATCAACCTTTTCTCCTTACTTGGAATGGAATTAAACAAAGGAAGAATTCA
TGGCAAGATGGAGTCCTTGGAACCAATTGCCCCATTCCTCCAAACTCCAA
CTACACTTACAAATTTCAAACCAAGGATCAGATTGGGTCCTACTTTTACT
TCCCATCAACTCTGATGCACCGAGCTGCTGGAGGATATGGAGGAATCAAT
ATCTATCAGAGACCTCGAATACCGATCCCTTACCCAATCCAGGATGGAGA
TTTCACTTTATTAATTGGCGACTGGTTCAAGACAAACCATAAGATATTAC
GACAGACTTTGGACTCAGGGAAGTCTCTTCCATTTCCAGATGGAGTCCTT
ATCAATGGTCAGGGTCATACCACCTTCACGGTGATCAGGAAAAAACTACA
TGTTT
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