FC920427

Overview
NameFC920427
Unique NameFC920427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC5_TRAVI (Laccase-5 OS=Trametes villosa GN=LCC5 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 51/174 (29.31%), Postives = 78/174 (44.83%), Query Frame = 3
Query:  168 TVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLT-----WNGIKQRKNSWQDGVLGTN-CPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLL-IGDWFKTNHKILRQTLDSGKSLPF-PDGVLINGQG 665
            T+++  ++P G+ +  +L  G FPGP +     D   +NVI+ L    +L      W+GI Q   +W DG    N CPI   +++ Y F   DQ G+++Y          G  G +               D D T++ + DW+ T  K+       G + P  PD VLING G
Sbjct:   32 TISNADVTPDGITRAAVLAGGVFPGPLITGNKGDEFQINVIDNLTNETMLKSTTIHWHGIFQAGTNWADGAAFVNQCPIATGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVVYDPDDPNASLYDVDDDTTVITLADWYHTAAKL-------GPAFPAGPDSVLINGLG 198          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC5_TRAVE (Laccase-5 OS=Trametes versicolor GN=LCC5 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 51/174 (29.31%), Postives = 78/174 (44.83%), Query Frame = 3
Query:  168 TVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLT-----WNGIKQRKNSWQDGVLGTN-CPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLL-IGDWFKTNHKILRQTLDSGKSLPF-PDGVLINGQG 665
            T+++  ++P G+ +  +L  G FPGP +     D   +NVI+ L    +L      W+GI Q   +W DG    N CPI   +++ Y F   DQ G+++Y          G  G +               D D T++ + DW+ T  K+       G + P  PD VLING G
Sbjct:   32 TISNADVTPDGITRAAVLAGGVFPGPLITGNKGDEFQINVIDNLTNETMLKSTTIHWHGIFQAGTNWADGAAFVNQCPIATGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVVYDPDDANASLYDVDDDTTVITLADWYHTAAKL-------GPAFPAGPDSVLINGLG 198          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC3_TRAVI (Laccase-3 OS=Trametes villosa GN=LCC3 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 48/172 (27.91%), Postives = 76/172 (44.19%), Query Frame = 3
Query:  171 VTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLT-----WNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLL-IGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQG 665
            + +  ++P GV ++ +L  G FPGP +     DN  +NV++KL    +LT     W+G+ Q   +W DG    T CPI    ++ Y F+  DQ G+Y+Y     +    G  G +               D + T++ + DW+ T   +L            P   LING G
Sbjct:   31 IVNKVIAPDGVARDTVLAGGTFPGPLITGKKGDNFRINVVDKLVNQTMLTSTTIHWHGMFQHTTNWADGPAFVTQCPITTGDDFLYNFRVPDQTGTYWYHSHLALQYCDGLRGPLVIYDPHDPQAYLYDVDDESTVITLADWYHTPAPLLP-----------PAATLINGLG 191          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC17_ORYSJ (Putative laccase-17 OS=Oryza sativa subsp. japonica GN=LAC17 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 45/174 (25.86%), Postives = 82/174 (47.13%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGG--INXXXXXXXXXXXXXXDGDFTLLIGDWFKTNH-KILRQTLDSGKSLPFPDGVLINGQ 662
            +++ + +   T+  L     ++ +NGQFPGP L++   D++I+N+IN+      L W+G++Q +  W DG    T CP+ P  +Y Y+F    Q G+ ++   +   RA   YG   I                    +L+G+W+  N   ++R    +G +    D + +N Q
Sbjct:   25 QYHEFVIRETTVKRLCKSHNIMTVNGQFPGPTLEINEGDSLIINLINRGRYNMTLHWHGVRQMRTGWSDGPEYVTQCPVRPGQSYRYRFTVAAQEGTLWWHAHSSWLRAT-VYGALLIRPRDGTSYPFDVQPTRELAPILLGEWWDMNPVDVVRAATRTGAAPNISDALTVNAQ 197          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC15_ORYSJ (Laccase-15 OS=Oryza sativa subsp. japonica GN=LAC15 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 43/169 (25.44%), Postives = 79/169 (46.75%), Query Frame = 3
Query:  159 YTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGV-LGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQ 662
            +T+ V+   ++ L       ++NGQ PGP ++V   D++ ++V+NK      + W+G+ Q  N W DGV + T  PI PN N+TY+F    Q G+ ++       R       I                 +  ++IG+W++ +   + + + +G    +  G  ING+
Sbjct:   43 HTFVVSQVNMTHLCKEMAFTVVNGQLPGPTIEVTEGDSVTVHVVNKSPYNLTIHWHGVYQLLNCWNDGVPMITQRPIQPNHNFTYRFNVAGQEGTLWWHAHDAFLRGTVHGALIIRPRHGAASYPFPRPHREVPIIIGEWWEKDLPQVDRNMTNGYFDDYSSGSTINGK 211          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC6_ORYSJ (Laccase-6 OS=Oryza sativa subsp. japonica GN=LAC6 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 51/173 (29.48%), Postives = 84/173 (48.55%), Query Frame = 3
Query:  159 YTWTVTSGTLSPLGVP--QEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLT--WNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILR-QTLDSGKSLPFPDGVLING 659
            +T+ V + +L  +  P    V  +NG+ PGP+++    D ++++VIN  D P+ +T  W+G+ QR   W DG  + T CPI P   YTY+F    Q G+ ++   +   RA   YG +                 + T+L+G+W+  +   L  Q+  +G   P  D   ING
Sbjct:   27 HTFNVATLSLPRICQPGNTSVTAVNGRVPGPQVEAREGDTVVIHVIN--DSPYNVTVHWHGVFQRGTPWADGPAMVTQCPIRPGHRYTYRFAVAGQEGTLWWHAHSSYMRAT-VYGALVIRPRRAGGYPFPTPYEEKTVLLGEWWNGDPVALESQSFSTGIPAPNADAYTING 196          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC4_TRAVI (Laccase-4 OS=Trametes villosa GN=LCC4 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 50/174 (28.74%), Postives = 77/174 (44.25%), Query Frame = 3
Query:  168 TVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLT-----WNGIKQRKNSWQDGVLGTN-CPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLL-IGDWFKTNHKILRQTLDSGKSLPF-PDGVLINGQG 665
            T+++G +SP G  +  +L NG FPGP +     DN  +NVI+ L    +L      W+G  Q+  +W DG    N CPI   +++ Y F   DQ G+++Y          G  G +               D + T++ + DW+ T   +       G + P   D  LING G
Sbjct:   31 TISNGDVSPDGFTRAAVLANGVFPGPLITGNKGDNFQINVIDNLSNETMLKSTSIHWHGFFQKGTNWADGAAFVNQCPIATGNSFLYDFTATDQAGTFWYHSHLSTQYCDGLRGPMVVYDPSDPHADLYDVDDETTIITLSDWYHTAASL-------GAAFPIGSDSTLINGLG 197          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC22_ORYSJ (Laccase-22 OS=Oryza sativa subsp. japonica GN=LAC22 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 44/171 (25.73%), Postives = 77/171 (45.03%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTN-HKILRQTLDSGKSLPFPDGVLING 659
            R Y + V    ++ L   + ++ +NG+FPGP L     DN+++ V+N +     + W+G++Q +  W DG    T CPI P S++ Y F    Q G+  +       RA   +G I                 +  +++G+W+K +   ++ Q +  G      D   ING
Sbjct:   31 RHYKFNVVMRNMTRLCSTKPILTVNGKFPGPTLYAREGDNVLVKVVNHVAHNVTIHWHGVRQIRTGWYDGPAYITQCPIQPGSSFLYNFTITGQRGTLLWHAHINWLRAT-VHGAIVILPKLGVPYPFPAPHKEAVIVLGEWWKEDTETVINQAMQLGVGPNISDSHTING 200          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC2_ORYSJ (Laccase-2 OS=Oryza sativa subsp. japonica GN=LAC2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 45/170 (26.47%), Postives = 76/170 (44.71%), Query Frame = 3
Query:  159 YTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTN-HKILRQTLDSGKSLPFPDGVLINGQ 662
            Y + +    +S L   + ++ +NG +PGP +     D +I+NV N +     + W+G+KQR+N W DG    T CPI    +Y Y F    Q G+ ++       RA   +G I               D +  +++G+W+  +   + RQ    G +    D   ING+
Sbjct:   31 YQFDIVMSNVSRLCHEKAMVTVNGSYPGPTIYAREGDRVIVNVTNHVKHNMTIHWHGLKQRRNGWADGPAYVTQCPIGSGGSYVYDFNVTRQRGTLWWHAHIAWMRAT-VHGAIVILPAAGVPYPFPKPDDEAEIVLGEWWHADVETVERQGSMLGMAPNMSDAHTINGK 199          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC1_PHLRA (Laccase OS=Phlebia radiata GN=LAC PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 49/172 (28.49%), Postives = 73/172 (42.44%), Query Frame = 3
Query:  171 VTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLT-----WNGIKQRKNSWQDGVLGTN-CPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLL-IGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQG 665
            + +  +SP G  ++ +L  G FPGP +     DN  +NVI++L    +L      W+G  Q   +W DG    N CPI    ++ Y FQ  DQ G+++Y          G  G                 D D T++ + DW+ T  ++       G   P  D  LING G
Sbjct:   31 IVNAAVSPDGFSRQAVLAEGVFPGPLIAGNKGDNFQINVIDELTNATMLKTTTIHWHGFFQHGTNWADGPAFINQCPIASGDSFLYNFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPADPYLDQYDVDDDSTVITLADWYHTAARL-------GSPFPAADTTLINGLG 195          
The following BLAST results are available for this feature:
BLAST of FC920427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
LAC5_TRAVI1.404e-1329.31Laccase-5 OS=Trametes villosa GN=LCC5 PE=3 SV=2[more]
LAC5_TRAVE1.404e-1329.31Laccase-5 OS=Trametes versicolor GN=LCC5 PE=2 SV=1[more]
LAC3_TRAVI1.404e-1327.91Laccase-3 OS=Trametes villosa GN=LCC3 PE=3 SV=1[more]
LAC17_ORYSJ1.404e-1325.86Putative laccase-17 OS=Oryza sativa subsp. japonic... [more]
LAC15_ORYSJ1.404e-1325.44Laccase-15 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC6_ORYSJ1.833e-1329.48Laccase-6 OS=Oryza sativa subsp. japonica GN=LAC6 ... [more]
LAC4_TRAVI2.395e-1328.74Laccase-4 OS=Trametes villosa GN=LCC4 PE=3 SV=1[more]
LAC22_ORYSJ2.395e-1325.73Laccase-22 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC2_ORYSJ3.127e-1326.47Laccase-2 OS=Oryza sativa subsp. japonica GN=LAC2 ... [more]
LAC1_PHLRA5.335e-1328.49Laccase OS=Phlebia radiata GN=LAC PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC32008C04EF RVDevelop1 Citrus clementina cDNA clone C32008C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920427 ID=FC920427; Name=FC920427; organism=Citrus clementina; type=EST; length=705bp
GGCGGCCAGAAGCTTAGATTAGATTCCATTAGACTCTCAACTCGACTCGA
CTCAACTTTGAAGCAATGGCGAGAACACTCTTGCTGCCGCTACTGGTCTG
TGTAGTTTTGGCTGCCTTGAGTGTTGCTTTGGTGAAGGCAGACGACCCGT
ATAGATTTTACACTTGGACTGTCACTTCTGGCACTTTGTCTCCTCTTGGC
GTTCCCCAAGAGGTTATTCTTATTAATGGTCAGTTTCCCGGTCCTAGATT
GGATGTGGTAACCAATGATAATATCATACTCAATGTCATTAACAAGCTAG
ATCAACCTTTTCTCCTTACTTGGAATGGAATTAAACAAAGGAAGAATTCA
TGGCAAGATGGAGTCCTTGGAACCAATTGCCCCATTCCTCCAAACTCCAA
CTACACTTACAAATTTCAAACCAAGGATCAGATTGGGTCCTACTTTTACT
TCCCATCAACTCTGATGCACCGAGCTGCTGGAGGATATGGAGGAATCAAT
ATCTATCAGAGACCTCGAATACCGATCCCTTACCCAATCCAGGATGGAGA
TTTCACTTTATTAATTGGCGACTGGTTCAAGACAAACCATAAGATATTAC
GACAGACTTTGGACTCAGGGAAGTCTCTTCCATTTCCAGATGGAGTCCTT
ATCAATGGTCAGGGTCATACCACCTTCACGGTGATCAGGAAAAAACTACA
TGTTT
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