FC920431

Overview
NameFC920431
Unique NameFC920431
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920431_ssr11 microsatellite FC920431_ssr11:11..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10254 contig Ccv1_Contig10254:3..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920431 vs. ExPASy Swiss-Prot
Match: SAHH_AQUAE (Adenosylhomocysteinase OS=Aquifex aeolicus GN=ahcY PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 50/138 (36.23%), Postives = 69/138 (50.00%), Query Frame = 1
Query:  163 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH-XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHE 573
            EF VKDLS A+ G   IE AE++MP L   R  F   +P KG KI+  LH+T +TA L+ TL   GAEV   + N  STQD                 +GE  + Y+      ++      PD+++DDG D    +H+
Sbjct:    2 EFDVKDLSLAEEGLKRIEWAEMDMPVLRQIRERFSKEKPLKGKKISACLHVTTETANLMRTLKEGGAEVYLTASNPLSTQDDVAAALVKYFEIPVFAIRGEDRETYYKHLRAVIE----KEPDVVIDDGADLISTLHK 135          
BLAST of FC920431 vs. ExPASy Swiss-Prot
Match: SAHH_THEAC (Adenosylhomocysteinase OS=Thermoplasma acidophilum GN=ahcY PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11
Identity = 43/125 (34.40%), Postives = 60/125 (48.00%), Query Frame = 1
Query:  199 GRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH-XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIH 570
            G L +  A   MP +   R  F   +PFKG K+  +LH+  +T +    L   GAEV+  SCN  S+ D                 KGET +EY+    + LD      PD+I+DDGGD T ++H
Sbjct:    6 GFLRLAWARDHMPVIAEIRKRFQAEKPFKGIKVAMALHVEAKTGIFALLLKEGGAEVKMASCNPLSSDDSVVQSLKEDYGMPVFARKGETSEEYYEYLHRTLD----VQPDIIIDDGGDLTKIVH 126          
BLAST of FC920431 vs. ExPASy Swiss-Prot
Match: SAHH_METAC (Adenosylhomocysteinase OS=Methanosarcina acetivorans GN=ahcY PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 47/141 (33.33%), Postives = 67/141 (47.52%), Query Frame = 1
Query:  199 GRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWK-GETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLP 618
            G +++E A   MP +   R +F   +P KG K+  +LH+  +TAVL+ETL A GA+V    CN  STQD                + G    EY+   +K LD      PD+ +DDG D    +H+        E+T  LP
Sbjct:   10 GNMKMEWARNHMPVIAIIREKFEKEKPLKGLKVGMALHVEAKTAVLVETLAAGGAQVAISGCNPLSTQDDVARALDTRKNISCFARYGCCTSEYYEAIDKVLDI----EPDITIDDGADLIFKLHK--------ERTDLLP 138          
BLAST of FC920431 vs. ExPASy Swiss-Prot
Match: SAHH_METMA (Adenosylhomocysteinase OS=Methanosarcina mazei GN=ahcY PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 44/126 (34.92%), Postives = 62/126 (49.21%), Query Frame = 1
Query:  199 GRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWK-GETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHE 573
            G +++E A   MP L   R +F   +P KG K+  +LH+  +TAVL+ETL A GA+V    CN  STQD                K G    EY+   ++ LD      PD+ +DDG D    +H+
Sbjct:   10 GNMKMEWARNHMPVLAIIREKFEKEKPLKGLKVGMALHVEAKTAVLVETLAAGGAQVAISGCNPLSTQDDVAAALDTRENINCFAKYGCCTGEYYEAIDRVLDI----EPDITIDDGADLIFKLHK 131          
BLAST of FC920431 vs. ExPASy Swiss-Prot
Match: SAHH_THEVO (Adenosylhomocysteinase OS=Thermoplasma volcanium GN=ahcY PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 44/125 (35.20%), Postives = 60/125 (48.00%), Query Frame = 1
Query:  199 GRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH-XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIH 570
            G L +E A   MP +   R  F   +PFKG  I  +LH+  +T +    L   GA VR  SCN  S+ D                 KGET +EY+   ++ L+      PD+I+DDGGD T L+H
Sbjct:    6 GFLRLEWARDHMPVIAEIRKRFLDEKPFKGINIAMALHVEAKTGIFSLLLKEGGANVRMASCNPLSSDDSVVESLKTDYGMPVFARKGETQEEYYENLQRTLE----KPPDIIIDDGGDLTKLVH 126          
The following BLAST results are available for this feature:
BLAST of FC920431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
SAHH_AQUAE1.030e-1336.23Adenosylhomocysteinase OS=Aquifex aeolicus GN=ahcY... [more]
SAHH_THEAC1.260e-1134.40Adenosylhomocysteinase OS=Thermoplasma acidophilum... [more]
SAHH_METAC1.645e-1133.33Adenosylhomocysteinase OS=Methanosarcina acetivora... [more]
SAHH_METMA2.149e-1134.92Adenosylhomocysteinase OS=Methanosarcina mazei GN=... [more]
SAHH_THEVO2.806e-1135.20Adenosylhomocysteinase OS=Thermoplasma volcanium G... [more]

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Properties
Property NameValue
Genbank descriptionC32008C10EF RVDevelop1 Citrus clementina cDNA clone C32008C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920431 ID=FC920431; Name=FC920431; organism=Citrus clementina; type=EST; length=689bp
GGGTAACCCACTCTCTCTCTCTCTCGCTTGTACAATCATTCACTTTGTTT
GGTTAGTTTCCAAAGAGAGAGTAGATTGCCCTCTCTTCCTTCTTTCTTTT
AGATCTATCAATTCTATTAATCAACCATGGCTTTGTCCGTCGAGAAATCC
GCTAGCGGTCGTGAATTCAAGGTGAAGGATCTGTCCCAGGCTGACTTCGG
CCGCCTCGAAATCGAGTTGGCCGAAGTCGAAATGCCGGGGCTCATGGCTT
GCCGCGCCGAGTTCGGCCCTTCACAGCCTTTCAAAGGAGCCAAGATCACC
GGTTCACTCCACATGACCATCCAGACGGCCGTCCTCATCGAGACACTCAC
CGCTCTCGGCGCCGAAGTCCGCTGGTGCTCCTGCAACATCTTCTCAACCC
AAGACCACGCGGCCGCCGCCATCGCACGTGACTCCGCCTCCGTCTTTGCC
TGGAAGGGTGAGACCCTCCAGGAGTACTGGTGGTGCACGGAGAAAGCCCT
GGACTGGGGTCCCGGCGGCGGCCCAGATCTCATCGTCGATGACGGTGGTG
ACGCCACGTTGTTGATCCACGAGGGAGTCAAAGCTGAGGAGATCTACGAG
AAGACCGGGAAGTTGCCCGACCCGGCCTCCACCGACAACGCCGAAGTTCA
GATTGTTTTGACTATCATTAGAGATGGGTTGAAGGCCGA
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