FC920435

Overview
NameFC920435
Unique NameFC920435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13865 contig Ccv1_Contig13865:16..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_THEEB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispH PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.214e-35
Identity = 66/123 (53.66%), Postives = 92/123 (74.80%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVV 626
            D + F+ +L  S+NY+R+GFGH EE  + +  EY S +I++++ NG+ +  G+V ++LAE++GFCWGVERAV +AYE R  FP E+IWITNEIIHNP+VN+RL +MAV+ IPV  G K F  V
Sbjct:    2 DTRAFKRSLHSSENYHRKGFGHGEEVNQQLQGEYQSSLIQQIRANGYRWQQGDVTIRLAEAFGFCWGVERAVALAYETRTHFPTERIWITNEIIHNPSVNERLRQMAVEFIPVVNGVKDFSGV 124          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_SYNR3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain RCC307) GN=ispH PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.214e-35
Identity = 69/123 (56.10%), Postives = 88/123 (71.54%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVV 626
            D + F+ +L  S+ YNRRGFG  EE    + Q Y S++I+ ++ENG+E   G V ++LAE++GFCWGVERAV IAYE R+ +P E+IWITNEIIHNP+VN  L EM V  IPVEEG K F  V
Sbjct:    2 DTRAFKRSLHHSERYNRRGFGRAEEVAGSLEQAYQSELIQSIRENGYELREGRVTIRLAEAFGFCWGVERAVAIAYETRRHYPTERIWITNEIIHNPSVNAHLVEMNVLFIPVEEGVKDFSGV 124          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_SYNPX (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain WH8102) GN=ispH PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.221e-34
Identity = 67/123 (54.47%), Postives = 88/123 (71.54%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVV 626
            D   F+ +L  S+ YNRRGFG  EE  E + Q Y S +I  +++NG++ + G + V+LAE++GFCWGVERAV +AYE RK +P E++WITNEIIHNP+VN  L EM VQ IPVE+G K F  V
Sbjct:    2 DTHAFKRSLHHSERYNRRGFGRAEEVAESLEQAYQSGLIGTIRDNGYKLSHGRLTVRLAEAFGFCWGVERAVAMAYETRKHYPAERLWITNEIIHNPSVNDHLREMDVQFIPVEQGVKDFSGV 124          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_SYNSC (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9605) GN=ispH PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.595e-34
Identity = 67/123 (54.47%), Postives = 86/123 (69.92%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVV 626
            D   F+ +L  S+ YNRRGFG  EE  E + Q Y S +I  +++NG+    G + V+LAE++GFCWGVERAV +AYE RK +P E++WITNEIIHNP+VN  L EM VQ IPVE+G K F  V
Sbjct:    2 DTHAFKRSLHHSERYNRRGFGRAEEVAESLEQAYQSGLIGTIRDNGYRLEHGRLNVRLAEAFGFCWGVERAVAMAYETRKHYPSERLWITNEIIHNPSVNDHLREMDVQFIPVEQGVKDFSGV 124          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_NOSP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ispH PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.553e-34
Identity = 63/123 (51.22%), Postives = 91/123 (73.98%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVV 626
            D K F+ +L  S+NYNR+GFGH+ E    +  EY S++I+++++  +    G+V ++LA+++GFCWGVERAV +AYE R+ FP E IWITNEIIHNP+VN+R++EM V+ IP+E   K F VV
Sbjct:    2 DTKAFKRSLQHSENYNRKGFGHQAEVATQLQSEYQSNLIQEIRDRNYILQRGDVTIRLAQAFGFCWGVERAVAMAYETRQHFPTEHIWITNEIIHNPSVNQRMQEMEVEFIPIEGKNKDFSVV 124          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP8 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 8801) GN=ispH PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.553e-34
Identity = 61/123 (49.59%), Postives = 94/123 (76.42%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVV 626
            D K F+ +L +S+NY+R+GFG  E  + +MN EY S +I+++++N +++  GNV + LA+++GFCWGVERAV +AYE R+ FP+E IWITNE+IH+P+VN+RLE+M ++ I V  G+K F  +
Sbjct:    2 DTKAFKRSLQQSENYHRKGFGQTEAAMGVMNTEYQSSLIQQIRQNNYQWKQGNVTIHLAQAFGFCWGVERAVAMAYETRQHFPKESIWITNELIHHPSVNQRLEQMEIKFIEVINGQKDFSQI 124          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9902) GN=ispH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.641e-34
Identity = 67/123 (54.47%), Postives = 86/123 (69.92%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVV 626
            D   F+ +L  S+ YNRRGFG  EE  E + Q Y S +I  +++NG++ T G + V LAE++GFCWGVERAV +AYE R+ +P E++WITNEIIHNP+VN  L EM V  IPVEEG K F  V
Sbjct:    2 DTHAFKRSLHHSERYNRRGFGRAEEVAENLEQAYQSGLIGTIRDNGYKLTHGRLNVHLAEAFGFCWGVERAVAMAYETRRHYPSERLWITNEIIHNPSVNDHLREMDVLFIPVEEGVKDFSGV 124          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_SYNPW (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain WH7803) GN=ispH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.641e-34
Identity = 66/123 (53.66%), Postives = 85/123 (69.11%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVV 626
            D   F+ +L  SD YNRRGFG  EE    + Q Y S +I  +++NG+    G ++V+LA+ +GFCWGVERAV +AYE RK +P E++WITNEIIHNP+VN  L EM VQ IPVE+G K F  V
Sbjct:    2 DTHAFKRSLHHSDRYNRRGFGRAEEVAGSLEQAYQSSLIGSIRDNGYRLNHGRLQVRLAKDFGFCWGVERAVAMAYETRKHYPSERLWITNEIIHNPSVNDHLREMNVQFIPVEQGVKDFSGV 124          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9311) GN=ispH PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.008e-33
Identity = 66/123 (53.66%), Postives = 85/123 (69.11%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVV 626
            D   F+ +L  SD YNRRGFG  +E    + Q Y S +I  +++NG+  T G +KV+LAE++GFCWGVERAV +AYE R+ +P+E+IWITNEIIHNP+VN  L EM V  I VE G K F  V
Sbjct:    2 DTHAFKRSLHHSDRYNRRGFGRADEVAGSLEQAYQSSLIGSIRDNGYSLTHGRLKVRLAEAFGFCWGVERAVAMAYETRRHYPQERIWITNEIIHNPSVNDHLREMDVLFISVEGGVKDFSGV 124          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_PROMS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain AS9601) GN=ispH PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.143e-32
Identity = 62/124 (50.00%), Postives = 86/124 (69.35%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVVN 629
            D + FR +L  SD YNRRGF    +  + + + Y SD+I  +++NGF YT G + +KLA+++GFCWGVERAV +AYE R+ +P E IWITNEIIHNP+VN  L +M V+ I  + G K F +V+
Sbjct:    2 DTQAFRRSLHHSDRYNRRGFDSPTKRAQALEEAYQSDLISSIRDNGFTYTKGRLNIKLAQAFGFCWGVERAVAMAYETRRHYPNENIWITNEIIHNPSVNDHLRKMNVKFISAKNGIKDFSLVS 125          
The following BLAST results are available for this feature:
BLAST of FC920435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_THEEB3.214e-3553.664-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNR33.214e-3556.104-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNPX1.221e-3454.474-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNSC1.595e-3454.474-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_NOSP73.553e-3451.224-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP83.553e-3449.594-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS94.641e-3454.474-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNPW4.641e-3453.664-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS33.008e-3353.664-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMS1.143e-3250.004-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC32008D07EF RVDevelop1 Citrus clementina cDNA clone C32008D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920435 ID=FC920435; Name=FC920435; organism=Citrus clementina; type=EST; length=644bp
GGAGCACGGTTCATAGTTCATTCTCAGACTCCACGCTGTCCGCCAACTTT
TGCGCCGTCTCTTTCTCGCTGAATCCGTGAATCTCCCTCATCATGGCGAC
GACTCTGCAGTTCTGCCGTGTTTGCGCGCGAACTGACATAGGTTCGCGCC
ATAATAATCGCTCCGGAGCGCTGGCTCCGCCGCGCCGGAGGCCTGTGATC
GTCAGGTGCTCCGGTGAAAAATCGACGAGCTCGGCGGCGGCTATTGGTGC
CGAATTTGACGCGAAACTGTTTCGGCATAACTTGACGAGAAGTGATAATT
ACAATCGGAGAGGATTTGGCCACAAGGAAGAGACTTTGGAGCTCATGAAT
CAGGAGTACACAAGTGATATTATAAAGAAATTGAAGGAGAATGGATTTGA
GTATACTTGGGGAAATGTTAAGGTGAAGCTGGCCGAATCATATGGCTTTT
GCTGGGGAGTTGAGCGTGCTGTGCAGATTGCTTATGAAGCAAGAAAACAG
TTTCCCGAGGAGAAGATCTGGATTACCAATGAAATCATACACAATCCAAC
TGTTAATAAGCGGTTGGAGGAGATGGCAGTTCAAAATATACCTGTTGAGG
AAGGAAAGAAAGCATTTGATGTGGTAAATAGGGTGATGNTGTGG
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