FC920435

Overview
NameFC920435
Unique NameFC920435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_PROM0 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9301) GN=ispH PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.143e-32
Identity = 62/124 (50.00%), Postives = 86/124 (69.35%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVVN 629
            D + FR +L  SD YNRRGF    +  + + + Y SD+I  +++NGF YT G + +KLA+++GFCWGVERAV +AYE R+ +P E IWITNEIIHNP+VN  L +M V+ I  + G K F +V+
Sbjct:    2 DTQAFRRSLHHSDRYNRRGFDSPTKRAQALEEAYQSDLISSIRDNGFTYTKGRLNIKLAQAFGFCWGVERAVAMAYETRRHYPNENIWITNEIIHNPSVNDHLRKMNVKFISAKNGIKDFSLVS 125          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_TRIEI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Trichodesmium erythraeum (strain IMS101) GN=ispH PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.326e-32
Identity = 59/122 (48.36%), Postives = 90/122 (73.77%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDV 623
            D K F   L +S+NYNR+GFGH +E   LM   Y S++I++++EN +    G V +KLA+++GFCWGVER+V +AYE R+ FP ++IWI+ E+IHNP+VN+ +++M ++ IPV +G+K F V
Sbjct:    2 DTKAFTRALKKSENYNRQGFGHAQEVATLMQSAYKSNLIQQIRENNYTLQRGEVTIKLAKTFGFCWGVERSVAMAYETRQHFPNQQIWISYELIHNPSVNQDMKDMEIKFIPVIDGQKDFSV 123          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_PROM9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9312) GN=ispH PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.673e-32
Identity = 61/124 (49.19%), Postives = 85/124 (68.55%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVVN 629
            D + FR +L  SD YNRRGF    +  + + + Y SD+I  +++NGF Y  G + +KLA+++GFCWGVERAV +AYE R+ +P E IWITNEIIHNP+VN  L +M V+ I  + G K F +V+
Sbjct:    2 DTQAFRRSLHHSDRYNRRGFDSPTKRAQALEEAYQSDLISSIRDNGFTYNKGRLNIKLAKAFGFCWGVERAVAMAYETRRHYPNENIWITNEIIHNPSVNDHLRKMNVKFISAKNGIKDFSLVS 125          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_PROMM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9313) GN=ispH PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.676e-32
Identity = 63/124 (50.81%), Postives = 84/124 (67.74%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVVN 629
            D + F+ +L  S+ YNRRGFG   E    + + Y S +I  +++NG+    G ++VKLAE++GFCWGVERAV +AYE R+ +P E+IWITNEIIHNP+VN+ L EM V  I  E G K F  VN
Sbjct:    2 DTQAFKRSLHHSERYNRRGFGRANEVASNLEKAYQSSLIGSIRDNGYVLQHGRLQVKLAEAFGFCWGVERAVAMAYETRRHYPSERIWITNEIIHNPSVNEHLREMDVLFIHAEGGVKDFSCVN 125          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_PROMT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL2A) GN=ispH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.815e-31
Identity = 64/123 (52.03%), Postives = 84/123 (68.29%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVV 626
            D + F+  L +SD YNRRGFG   +  + + + Y S +I  ++ENG     G +KVKLAE++GFCWGVER+V +AYE RK +P E+IWITNEIIHNP+VN  L +M V  I  E+G K F VV
Sbjct:    2 DTQAFKQTLHKSDRYNRRGFGSANKRAQALAEAYQSGLIGSIRENGNLLEHGRLKVKLAEAFGFCWGVERSVAMAYETRKHYPNERIWITNEIIHNPSVNDHLRKMNVLFISEEKGVKDFSVV 124          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_PROM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL1A) GN=ispH PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.815e-31
Identity = 64/123 (52.03%), Postives = 84/123 (68.29%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVV 626
            D + F+  L +SD YNRRGFG   +  + + + Y S +I  ++ENG     G +KVKLAE++GFCWGVER+V +AYE RK +P E+IWITNEIIHNP+VN  L +M V  I  E+G K F VV
Sbjct:    2 DTQAFKQTLHKSDRYNRRGFGSANKRAQALAEAYQSGLIGSIRENGNLLEHGRLKVKLAEAFGFCWGVERSVAMAYETRKHYPNERIWITNEIIHNPSVNDHLRKMNVLFISEEKGVKDFSVV 124          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_PROMP (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ispH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 60/124 (48.39%), Postives = 84/124 (67.74%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVVN 629
            D + FR +L  SD YNRRGF    +  + + + Y SD+I  ++ N F Y  G + +KLA+++GFCWGVERAV +AYE R+ +P+E IWITNEIIHNP+VN  L +M V+ I  + G K F +V+
Sbjct:    2 DTQAFRRSLHHSDRYNRRGFDSPTKRAQALEEAYQSDLITSIRNNSFTYKKGRLNIKLAQAFGFCWGVERAVAMAYETRRHYPDENIWITNEIIHNPSVNDHLRKMNVKFISAKNGIKDFSLVS 125          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_PROM3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9303) GN=ispH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 62/124 (50.00%), Postives = 84/124 (67.74%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVVN 629
            D + F+ +L  S+ YNRRGFG   E    + + Y S +I  +++NG+    G ++VKLAE++GFCWGVERAV +AYE R+ +P E+IWITNEIIHNP+VN+ L EM V  I  E G K F  V+
Sbjct:    2 DTQAFKRSLHHSERYNRRGFGRANEVASNLEKAYQSSLIGSIRDNGYVLQHGRLQVKLAEAFGFCWGVERAVAMAYETRRHYPSERIWITNEIIHNPSVNEHLREMDVLFIHAEGGVKDFSCVS 125          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_PROM4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9211) GN=ispH PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.825e-30
Identity = 60/123 (48.78%), Postives = 85/123 (69.11%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVV 626
            D + F+ +L  SD YNRRGF    +  + + + Y S++I  +++NG+ +  G ++VKLAE++GFCWGVERAV +AYE R+ +P+E IWITNEIIHNP+VN  L  M V+ I  E+G K F  V
Sbjct:    2 DTQAFKRSLHHSDRYNRRGFESPTKRAQALEKAYQSNLIGSIRDNGYLFEHGRLRVKLAEAFGFCWGVERAVAMAYETRRHYPKESIWITNEIIHNPSVNDHLRNMNVRFISAEKGIKNFSSV 124          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_PROMA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus GN=ispH PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.935e-30
Identity = 60/123 (48.78%), Postives = 83/123 (67.48%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVV 626
            D + F+ +L  SD YNRRGF    +  + + + Y S++I  +++NG+    G ++VKLAE++GFCWGVERAV +AYE R+ +P E IWITNEIIHNP+VN  L  M V+ I  E+G K F  V
Sbjct:    2 DTQAFKRSLHHSDRYNRRGFESPAKRAQALEKAYQSNLIASIRDNGYLLEHGRLRVKLAEAFGFCWGVERAVAMAYETRRHYPTESIWITNEIIHNPSVNDHLRNMNVRFISAEKGIKDFSSV 124          
The following BLAST results are available for this feature:
BLAST of FC920435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_PROM01.143e-3250.004-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_TRIEI3.326e-3248.364-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM95.673e-3249.194-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMM9.676e-3250.814-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMT2.815e-3152.034-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM12.815e-3152.034-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMP3.677e-3148.394-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM33.677e-3150.004-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM41.825e-3048.784-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMA6.935e-3048.784-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32008D07EF RVDevelop1 Citrus clementina cDNA clone C32008D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920435 ID=FC920435; Name=FC920435; organism=Citrus clementina; type=EST; length=644bp
GGAGCACGGTTCATAGTTCATTCTCAGACTCCACGCTGTCCGCCAACTTT
TGCGCCGTCTCTTTCTCGCTGAATCCGTGAATCTCCCTCATCATGGCGAC
GACTCTGCAGTTCTGCCGTGTTTGCGCGCGAACTGACATAGGTTCGCGCC
ATAATAATCGCTCCGGAGCGCTGGCTCCGCCGCGCCGGAGGCCTGTGATC
GTCAGGTGCTCCGGTGAAAAATCGACGAGCTCGGCGGCGGCTATTGGTGC
CGAATTTGACGCGAAACTGTTTCGGCATAACTTGACGAGAAGTGATAATT
ACAATCGGAGAGGATTTGGCCACAAGGAAGAGACTTTGGAGCTCATGAAT
CAGGAGTACACAAGTGATATTATAAAGAAATTGAAGGAGAATGGATTTGA
GTATACTTGGGGAAATGTTAAGGTGAAGCTGGCCGAATCATATGGCTTTT
GCTGGGGAGTTGAGCGTGCTGTGCAGATTGCTTATGAAGCAAGAAAACAG
TTTCCCGAGGAGAAGATCTGGATTACCAATGAAATCATACACAATCCAAC
TGTTAATAAGCGGTTGGAGGAGATGGCAGTTCAAAATATACCTGTTGAGG
AAGGAAAGAAAGCATTTGATGTGGTAAATAGGGTGATGNTGTGG
back to top