FC920445

Overview
NameFC920445
Unique NameFC920445
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: DNMT1_HUMAN (DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.890e-23
Identity = 52/132 (39.39%), Postives = 79/132 (59.85%), Query Frame = 1
Query:  238 TRGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTH 633
            T   + + LP  GDV+++CGGPPCQG SG NRF ++    +  KN  ++ F+   D+ +P+F L+ENV + V F + ++ +  L  L++M YQ   G++ AG YG+ Q R R  +  A P EKLP +  P H
Sbjct: 1203 TTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRT--YSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLH 1332          
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: DNMT1_RAT (DNA (cytosine-5)-methyltransferase 1 OS=Rattus norvegicus GN=Dnmt1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.223e-23
Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = 1
Query:  262 LPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTH 633
            LP  GDV+++CGGPPCQG SG NRF ++    +  KN  ++ F+   D+ +P+F L+ENV + V F + ++ +  L  L++M YQ   G++ AG YG+ Q R R  +  A P EKLP +  P H
Sbjct: 1216 LPQKGDVEMLCGGPPCQGFSGMNRFNSRT--YSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLH 1337          
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: DNMT1_CHICK (DNA (cytosine-5)-methyltransferase 1 OS=Gallus gallus GN=DNMT1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.223e-23
Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = 1
Query:  262 LPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTH 633
            LP  GDV+++CGGPPCQG SG NRF ++    +  KN  ++ F+   D+ +P+F L+ENV + V F + ++ +  L  L++M YQ   G++ AG YG+ Q R R  +  A P EKLP +  P H
Sbjct: 1126 LPQKGDVEMLCGGPPCQGFSGMNRFNSRT--YSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIVLAAAPGEKLPMFPEPLH 1247          
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: DNMT1_MOUSE (DNA (cytosine-5)-methyltransferase 1 OS=Mus musculus GN=Dnmt1 PE=1 SV=5)

HSP 1 Score: 107.457 bits (267), Expect = 7.181e-23
Identity = 50/124 (40.32%), Postives = 76/124 (61.29%), Query Frame = 1
Query:  262 LPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTH 633
            LP  GDV+++CGGPPCQG SG NRF ++    +  KN  ++ F+   D+ +P+F L+ENV + V + + ++ +  L  L++M YQ   G++ AG YG+ Q R R  +  A P EKLP +  P H
Sbjct: 1214 LPQKGDVEMLCGGPPCQGFSGMNRFNSRT--YSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLH 1335          
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: DNMT1_BOVIN (DNA (cytosine-5)-methyltransferase 1 OS=Bos taurus GN=DNMT1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.564e-22
Identity = 49/124 (39.52%), Postives = 75/124 (60.48%), Query Frame = 1
Query:  262 LPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTH 633
            LP  GDV+++CGGPPCQG SG NRF ++    +  KN  ++ F+   D+ +P++ L+ENV + V F + ++ +  L  L++M YQ   G++ AG YG+ Q R R  +  A P E LP +  P H
Sbjct: 1208 LPQKGDVEMLCGGPPCQGFSGMNRFNSRT--YSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEPLPLFPEPLH 1329          
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: MTA1_RUEGE (Modification methylase AgeI OS=Ruegeria gelatinovora GN=ageIM PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 42/121 (34.71%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  271 PGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTH 633
            PG VDV+ GGPPCQG S + + R+ D      +N+  + +   V+  +PK  L+ENVV ++  + G +    +AR   + Y   +  + A  YG+PQ R RVF++GA   +++ P   P+H
Sbjct:   68 PGQVDVVMGGPPCQGFSTYGQRRDDD-----ARNQLYVPYFGFVEEFRPKAFLIENVVGLLSMSGGAVLADMVARAEALGYAADVVTLDACEYGVPQHRRRVFIFGAADGQRIDP-PQPSH 182          
The following BLAST results are available for this feature:
BLAST of FC920445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
DNMT1_HUMAN1.890e-2339.39DNA (cytosine-5)-methyltransferase 1 OS=Homo sapie... [more]
DNMT1_RAT3.223e-2341.13DNA (cytosine-5)-methyltransferase 1 OS=Rattus nor... [more]
DNMT1_CHICK3.223e-2341.13DNA (cytosine-5)-methyltransferase 1 OS=Gallus gal... [more]
DNMT1_MOUSE7.181e-2340.32DNA (cytosine-5)-methyltransferase 1 OS=Mus muscul... [more]
DNMT1_BOVIN3.564e-2239.52DNA (cytosine-5)-methyltransferase 1 OS=Bos taurus... [more]
MTA1_RUEGE6.093e-1434.71Modification methylase AgeI OS=Ruegeria gelatinovo... [more]

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Properties
Property NameValue
Genbank descriptionC32008E06EF RVDevelop1 Citrus clementina cDNA clone C32008E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920445 ID=FC920445; Name=FC920445; organism=Citrus clementina; type=EST; length=692bp
GATGATGGCGAATCTGAAGAAGATGATGATAATGGTAATGTAGAAGATGA
GAGTGAAGATGATTCTGAGATTTTTGAGGTAGAGAAAATTCTCAAAATAT
GCTATGGTGATCCAAAGGAGATAAAGAAACGTGGGTTGTATCTGAAGATT
CGTTGGAGAAATTATGGGCCTAGTGAAGACACTTGGGAGCCAATTGAAGG
GTTGAGCAATTGTGGGGAGAAGATAAAAGAATTTGTCACACGCGGATTCA
AATCAAAGATTTTGCCACTGCCTGGAGATGTTGATGTGATTTGTGGGGGA
CCTCCATGCCAAGGAGTTAGTGGATTCAATCGTTTTAGGAACAAAGATAA
TCCACTGGCTGATGAAAAAAATAAACAGCTAATTGTTTTCATGGATATAG
TTGACTTTTTGAAGCCTAAGTTTGTATTGATGGAAAATGTTGTTGACATT
GTCAAGTTTGCCAAAGGATTACTTGGTCGATATGCCTTGGCTCGACTTAT
TCAAATGAATTACCAAGTTCGGATGGGAATGATGGCAGCAGGGGCATATG
GACTTCCCCAATTTCGTATGCGGGTCTTCTTGTGGGGAGCCCAACCTACT
GAGAAATTGCCTCCTTATGCACTTCCAACACATGATGTTGTTTTGAGAGG
GGTTATCCCAACCGAGTTTGAAAGAAACACCGTTGCATATGA
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