FC920445
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: DNMT1_HUMAN (DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 1.890e-23 Identity = 52/132 (39.39%), Postives = 79/132 (59.85%), Query Frame = 1 Query: 238 TRGFKSKILPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTH 633 T + + LP GDV+++CGGPPCQG SG NRF ++ + KN ++ F+ D+ +P+F L+ENV + V F + ++ + L L++M YQ G++ AG YG+ Q R R + A P EKLP + P H Sbjct: 1203 TTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRT--YSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLH 1332
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: DNMT1_RAT (DNA (cytosine-5)-methyltransferase 1 OS=Rattus norvegicus GN=Dnmt1 PE=1 SV=2) HSP 1 Score: 108.612 bits (270), Expect = 3.223e-23 Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = 1 Query: 262 LPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTH 633 LP GDV+++CGGPPCQG SG NRF ++ + KN ++ F+ D+ +P+F L+ENV + V F + ++ + L L++M YQ G++ AG YG+ Q R R + A P EKLP + P H Sbjct: 1216 LPQKGDVEMLCGGPPCQGFSGMNRFNSRT--YSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLH 1337
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: DNMT1_CHICK (DNA (cytosine-5)-methyltransferase 1 OS=Gallus gallus GN=DNMT1 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.223e-23 Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = 1 Query: 262 LPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTH 633 LP GDV+++CGGPPCQG SG NRF ++ + KN ++ F+ D+ +P+F L+ENV + V F + ++ + L L++M YQ G++ AG YG+ Q R R + A P EKLP + P H Sbjct: 1126 LPQKGDVEMLCGGPPCQGFSGMNRFNSRT--YSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIVLAAAPGEKLPMFPEPLH 1247
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: DNMT1_MOUSE (DNA (cytosine-5)-methyltransferase 1 OS=Mus musculus GN=Dnmt1 PE=1 SV=5) HSP 1 Score: 107.457 bits (267), Expect = 7.181e-23 Identity = 50/124 (40.32%), Postives = 76/124 (61.29%), Query Frame = 1 Query: 262 LPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTH 633 LP GDV+++CGGPPCQG SG NRF ++ + KN ++ F+ D+ +P+F L+ENV + V + + ++ + L L++M YQ G++ AG YG+ Q R R + A P EKLP + P H Sbjct: 1214 LPQKGDVEMLCGGPPCQGFSGMNRFNSRT--YSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLH 1335
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: DNMT1_BOVIN (DNA (cytosine-5)-methyltransferase 1 OS=Bos taurus GN=DNMT1 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.564e-22 Identity = 49/124 (39.52%), Postives = 75/124 (60.48%), Query Frame = 1 Query: 262 LPLPGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTH 633 LP GDV+++CGGPPCQG SG NRF ++ + KN ++ F+ D+ +P++ L+ENV + V F + ++ + L L++M YQ G++ AG YG+ Q R R + A P E LP + P H Sbjct: 1208 LPQKGDVEMLCGGPPCQGFSGMNRFNSRT--YSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEPLPLFPEPLH 1329
BLAST of FC920445 vs. ExPASy Swiss-Prot
Match: MTA1_RUEGE (Modification methylase AgeI OS=Ruegeria gelatinovora GN=ageIM PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14 Identity = 42/121 (34.71%), Postives = 68/121 (56.20%), Query Frame = 1 Query: 271 PGDVDVICGGPPCQGVSGFNRFRNKDNPLADEKNKQLIVFMDIVDFLKPKFVLMENVVDIVKFAKGLLGRYALARLIQMNYQVRMGMMAAGAYGLPQFRMRVFLWGAQPTEKLPPYALPTH 633 PG VDV+ GGPPCQG S + + R+ D +N+ + + V+ +PK L+ENVV ++ + G + +AR + Y + + A YG+PQ R RVF++GA +++ P P+H Sbjct: 68 PGQVDVVMGGPPCQGFSTYGQRRDDD-----ARNQLYVPYFGFVEEFRPKAFLIENVVGLLSMSGGAVLADMVARAEALGYAADVVTLDACEYGVPQHRRRVFIFGAADGQRIDP-PQPSH 182 The following BLAST results are available for this feature:
BLAST of FC920445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920445 ID=FC920445; Name=FC920445; organism=Citrus clementina; type=EST; length=692bpback to top |