FC920449

Overview
NameFC920449
Unique NameFC920449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9467 contig Ccv1_Contig9467:10..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.514e-58
Identity = 107/203 (52.71%), Postives = 142/203 (69.95%), Query Frame = 3
Query:  117 MSLIFSLFVGLL-MVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            +SL+F+L V    +   V +  FD  +  +W      V  +G+ L L+LD  SG+GF +K +YLFGK+ +Q+KLV G+SAGTVTA+Y+ S G   +E DFEFLGN TG+PY + TNVY  G G+REQ+  LWFDPT +FHTYS+LWN   +VF+VD+ P+R   NL+H GI +PK Q M +YSS+WNAD WAT+G  VKTDWS
Sbjct:    8 LSLLFTLTVSTTTLFSPVFAGTFDTEFDITWGDGRGKVLNNGELLTLSLDRASGSGFQTKKEYLFGKIDMQLKLVPGNSAGTVTAYYLKSKGDTWDEIDFEFLGNLTGDPYTMHTNVYTQGKGDREQQFHLWFDPTADFHTYSVLWNPHHIVFMVDDIPVREFKNLQHMGIQYPKLQPMRLYSSLWNADQWATRGGLVKTDWS 210          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.288e-58
Identity = 109/208 (52.40%), Postives = 150/208 (72.12%), Query Frame = 3
Query:  102 SSMVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHV-QYDGD-TLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPN-HNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            S  V  +L   LF  L    +   AKF+D ++ +W+  H+ Q DG   ++L LD  SG GFASK +YLFG+VS++IKL+ GDSAGTVTAFYM+SD  +  +E DFEFLGN +G+PY VQTNV+ +G G+REQR++LWFDP+++FH Y++ WN  ++VF VD  PIRV+ N E + +P+P+ Q MGVYS++W ADDWAT+G   K +WS
Sbjct:    8 SRNVFYTLSLCLFAALYQPVMSRPAKFEDDFRIAWSDTHITQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTDSVRDELDFEFLGNRSGQPYTVQTNVFAHGKGDREQRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVPIRVYKNNEARKVPYPRFQPMGVYSTLWEADDWATRGGIEKINWS 215          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH13_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS=Arabidopsis thaliana GN=XTH13 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.630e-57
Identity = 102/197 (51.78%), Postives = 138/197 (70.05%), Query Frame = 3
Query:  135 LFVGLLMVGLVSSAKFDDLYQTSWAFN--HVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWSH 719
            L + LL++  +S+  F D +  +W     ++   G  L   LD  SG+GF SK +YLFGK+ +++KLV G+SAGTVTA+Y+SS G   +E DFEFLGN TG+PY++ TNV+  G GNRE +  LWFDPT +FHTY++LWN   ++FLVD  PIRV  N E  G+ +PK Q M +YSS+W ADDWATQG +VKTDW++
Sbjct:   11 LLLSLLLLISLSAGSFYDNFDITWGNGRANIVESGQLLTCTLDKISGSGFQSKKEYLFGKIDMKMKLVAGNSAGTVTAYYLSSKGETWDEIDFEFLGNVTGQPYVLHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEADDWATQGGKVKTDWTN 207          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.128e-57
Identity = 107/206 (51.94%), Postives = 144/206 (69.90%), Query Frame = 3
Query:  105 SMVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            +M+  S I    +   M+  VS A F    + +W     Q   +GD L L+LD  SG+GF SK++YLFGK+ +QIKLV G+SAGTVTA+Y+ S G   +E DFEFLGN +G+PY + TNV+  G G+REQ+  LWFDPT +FHTYS+LWN ++++F VD TPIR   N+E +G  FPK+Q M +YSS+WNA++WAT+G  VKTDWS
Sbjct:    2 AMISYSTIVVALLASFMICSVS-ANFQRDVEITWGDGRGQITNNGDLLTLSLDKASGSGFQSKNEYLFGKIDMQIKLVAGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTQGKGDREQQFKLWFDPTSDFHTYSILWNPQRIIFSVDGTPIREFKNMESQGTLFPKNQPMRMYSSLWNAEEWATRGGLVKTDWS 206          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.128e-57
Identity = 103/197 (52.28%), Postives = 135/197 (68.53%), Query Frame = 3
Query:  135 LFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWSH 719
            L   LL++  V++  F D +  +W          G  L   LD  SG+GF SK +YLFGK+ ++IKLV G+SAGTVTA+Y+SS G   +E DFEFLGN TG+PY++ TNV+  G GNRE +  LWFDPT +FHTY++LWN   ++FLVD  PIRV  N E  G+ +PK Q M +YSS+W ADDWATQG +VKTDW++
Sbjct:   12 LLASLLILIGVATGSFYDSFDITWGAGRANIFESGQLLTCTLDKTSGSGFQSKKEYLFGKIDMKIKLVPGNSAGTVTAYYLSSKGETWDEIDFEFLGNVTGQPYVIHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEADDWATQGGKVKTDWTN 208          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.741e-57
Identity = 105/202 (51.98%), Postives = 144/202 (71.29%), Query Frame = 3
Query:  117 MSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            ++ +  LF+ L++   VS A F    + +W      ++ +G+ L L+LD  SG+GF SK++YLFGKVS+Q+KLV G+SAGTVT  Y+ S G   +E DFEFLGN++GEPY + TNVY  G G++EQ+  LWFDPT  FHTY++LWN ++++F VD TPIR   N+E  G  FPK++ M +YSS+WNADDWAT+G  VKTDWS
Sbjct:    3 ITYLLPLFLSLIITSSVS-ANFQRDVEITWGDGRGQIKNNGELLTLSLDKSSGSGFQSKNEYLFGKVSMQMKLVPGNSAGTVTTLYLKSPGTTWDEIDFEFLGNSSGEPYTLHTNVYTQGKGDKEQQFKLWFDPTANFHTYTILWNPQRIIFTVDGTPIREFKNMESLGTLFPKNKPMRMYSSLWNADDWATRGGLVKTDWS 203          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 8.087e-57
Identity = 103/200 (51.50%), Postives = 145/200 (72.50%), Query Frame = 3
Query:  126 IFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPN-HNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            IF+L   + +      A F + ++ +W+ +H++   DG  ++L LD  +G GFASK KYLFG+VS++IKL+ GDSAGTVTAFYM+SD     +E DFEFLGN +G+PY VQTN++ +G G+REQR++LWFDP+ ++HTY++LW+ + +VF VD+ PIR + N E K I +P  Q MGVYS++W ADDWAT+G   K DWS
Sbjct:   17 IFTLLTLMFIRVSARPATFVEDFKAAWSESHIRQMEDGKAIQLVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTATVRDELDFEFLGNRSGQPYSVQTNIFAHGKGDREQRVNLWFDPSMDYHTYTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWS 216          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.087e-57
Identity = 100/178 (56.18%), Postives = 132/178 (74.16%), Query Frame = 3
Query:  192 YQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWSH 719
            Y+ SWA +H+++   G T  L LD  SGAGF SK  YLFG  S++++LVGGDSAG VTAFY+SS+   H+E DFEFLGN TG+PY++QTNV+  G GNREQR+ LWFDPTK +H+YS+LWN   +V  VD+ PIR   N +  G+ FP +Q M +YSS+W+ADDWAT+G   KT+W++
Sbjct:   37 YEPSWASHHIKFLNGGTTTDLILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYLSSNNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGNREQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTNWAN 214          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.087e-57
Identity = 102/205 (49.76%), Postives = 141/205 (68.78%), Query Frame = 3
Query:  108 MVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            +V  S+I SL + +    +VSS  F+  +  +W+  HV    DG +  L LD  SGA F+S   +LFG++ ++IKL+ G S GTV A+YMSSD PN +E DFEFLGN  G+PY++QTNVY  G+ NRE+R+ LWFDP K+FHTYS+LWN  Q+VF+VD+ PIR++ N   KG+ +P+ Q M V +S+WN + WAT+G   K DWS
Sbjct:   13 LVGFSIISSLLLWVSQASVVSSGDFNKDFFVTWSPTHVNTSNDGRSRTLKLDQESGASFSSIQTFLFGQIDMKIKLIRGSSQGTVVAYYMSSDQPNRDEIDFEFLGNVNGQPYILQTNVYAEGLDNREERIHLWFDPAKDFHTYSILWNIHQIVFMVDQIPIRLYRNHGEKGVAYPRLQPMSVQASLWNGESWATRGGHDKIDWS 217          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH21_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.802e-56
Identity = 107/207 (51.69%), Postives = 143/207 (69.08%), Query Frame = 3
Query:  102 SSMVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFN--HVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            S+++ MS+  SLF+GL ++ +V    F+     +W     ++  +G  L L LD  SG+GF SK++YL+GKV +QIKLV G+SAGTVT FY+ S G   +E DFEFLGN +G+PY+V TNVY  G G+REQ+  LWFDPT  FH YS+LWN   +VF +D  PIR   NLE  G+ +PK+Q M +Y S+WNADDWAT+G  VKT+WS
Sbjct:    4 STLLVMSI--SLFLGLSILLVVHGKDFNQDIDITWGDGRGNILNNGTLLNLGLDQSSGSGFQSKAEYLYGKVDMQIKLVPGNSAGTVTTFYLKSQGLTWDEIDFEFLGNVSGDPYIVHTNVYTQGKGDREQQFYLWFDPTAAFHNYSILWNPSHIVFYIDGKPIREFKNLEVLGVAYPKNQPMRMYGSLWNADDWATRGGLVKTNWS 208          
The following BLAST results are available for this feature:
BLAST of FC920449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH25_ARATH2.514e-5852.71Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH4.288e-5852.40Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH13_ARATH1.630e-5751.78Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH23_ARATH2.128e-5751.94Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH12_ARATH2.128e-5752.28Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH22_ARATH4.741e-5751.98Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH6_ARATH8.087e-5751.50Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC8.087e-5756.18Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH10_ARATH8.087e-5749.76Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH21_ARATH1.802e-5651.69Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC32008E10EF RVDevelop1 Citrus clementina cDNA clone C32008E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920449 ID=FC920449; Name=FC920449; organism=Citrus clementina; type=EST; length=719bp
GACAGATCAGCATTTCAAAGTATAAGCTTCAACTTCCCTCCACTTCACTG
GGCCTGCTCTGCTCATTCGCTTACTTCCTCTCCCCGTTCTTCTGTCTTCA
TTCTTCAATGGTTAAAATGTCTTTGATTTTCAGTCTGTTTGTGGGTCTTT
TAATGGTAGGTTTGGTCAGCTCAGCTAAGTTTGATGACCTTTATCAAACA
AGCTGGGCATTTAATCATGTTCAGTATGATGGGGACACTCTCAAGCTTAA
CCTCGATAATTATTCCGGAGCTGGGTTTGCGTCAAAGAGCAAGTATTTGT
TTGGGAAAGTCTCCATCCAAATTAAACTTGTAGGGGGTGACTCTGCTGGA
ACTGTCACTGCCTTCTATATGTCATCAGACGGTCCAAATCACAACGAGTT
CGATTTTGAGTTCCTGGGGAACACTACAGGAGAGCCATACTTAGTCCAAA
CCAATGTTTATGTGAATGGTGTGGGCAACAGAGAGCAGAGACTTGACCTC
TGGTTCGACCCAACAAAGGAATTTCATACCTATTCCCTCCTTTGGAACCA
GCGCCAAGTTGTATTTTTGGTGGATGAGACCCCAATTAGAGTGCACACTA
ACTTGGAGCACAAAGGAATTCCCTTCCCCAAGGACCAAGCCATGGGTGTG
TACAGTTCAATATGGAATGCTGATGACTGGGCCACACAGGGGGAAAGGGT
CAAGACGGACTGGAGCCAT
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