FC920449

Overview
NameFC920449
Unique NameFC920449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9467 contig Ccv1_Contig9467:10..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 4.014e-56
Identity = 103/196 (52.55%), Postives = 138/196 (70.41%), Query Frame = 3
Query:  138 FVGLLMVGL-VSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            F  LL+    VS+A F+     +W      +  +G  L L+LD  SG+GF SK++YLFGK+ +QIKLV G+SAGTVT FY+ S+G   +E DFEFLGN +G+PY + TNVY  G G++EQ+  LWFDPT  FHTYS+LWN ++++  VD+TPIR   N E  G+ FPK++ M +Y+S+WNADDWAT+G  VKTDWS
Sbjct:    9 FTTLLVAAFSVSAADFNTDVNVAWGNGRGKILNNGQLLTLSLDKSSGSGFQSKTEYLFGKIDMQIKLVPGNSAGTVTTFYLKSEGSTWDEIDFEFLGNMSGDPYTLHTNVYTQGKGDKEQQFHLWFDPTANFHTYSILWNPQRIILTVDDTPIREFKNYESLGVLFPKNKPMRMYASLWNADDWATRGGLVKTDWS 204          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.846e-56
Identity = 101/178 (56.74%), Postives = 128/178 (71.91%), Query Frame = 3
Query:  192 YQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWSH 719
            Y  +WAF+H +    G  L+L LD Y+G GF SK  YLFG  S+ IKL  GD+AG VTAFY+SS    H+E DFEFLGN TG+P ++QTNV+  G GNREQR+ LWFDP+K +HTYS+LWN  Q+VF VD  PIRV  N +  G+ FP +Q M +YSS+WNADDWAT+G   KT+W++
Sbjct:   38 YVPTWAFDHQKQLNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNEHDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWAN 215          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH8_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.846e-56
Identity = 106/211 (50.24%), Postives = 138/211 (65.40%), Query Frame = 3
Query:  108 MVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSD---GPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIP----FPKDQAMGVYSSIWNADDWATQGERVKTDW 713
            M  + L  +  +    +    +  F+D +   W+ NH     DG+   L+LDN +G GF +K  Y FG  S+++KLVGGDSAG VTA+YM S+   GP  +E DFEFLGN TG+PY++QTNVY NG GNRE R  LWFDPTK++HTYS+LWN  Q+VF VD  PIRV+ N +   +P    FP  + M ++SSIWNADDWAT+G   KTDW
Sbjct:    1 MTALFLFMTALMASSSIAATPTQSFEDNFNIMWSENHFTTSDDGEIWNLSLDNDTGCGFQTKHMYRFGWFSMKLKLVGGDSAGVVTAYYMCSENGAGPERDEIDFEFLGNRTGQPYIIQTNVYKNGTGNREMRHSLWFDPTKDYHTYSILWNNHQLVFFVDRVPIRVYKNSDK--VPNNDFFPNQKPMYLFSSIWNADDWATRGGLEKTDW 209          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.941e-56
Identity = 106/202 (52.48%), Postives = 135/202 (66.83%), Query Frame = 3
Query:  135 LFVGLLMVGLVSSAKFDDL-----YQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWSH 719
            L V   MV  +   K  D+     Y  +WAF+H +    G  L+L LD Y+G GF SK  YLFG  S+ IKL  GD+AG VTAFY+SS    H+E DFEFLGN TG+P ++QTNV+  G GNREQR+ LWFDP+K +HTYS+LWN  Q+VF VD  PIR   N +  G+ FP +Q M +YSS+WNADDWAT+G   KT+W++
Sbjct:   15 LMVSSTMVMAIPPRKAIDVPFGRNYVPTWAFDHQKQFNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNEHDEIDFEFLGNRTGQPAILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSILWNMYQIVFFVDNIPIRTFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWAN 216          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH14_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 14 OS=Arabidopsis thaliana GN=XTH14 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.796e-55
Identity = 101/205 (49.27%), Postives = 135/205 (65.85%), Query Frame = 3
Query:  114 KMSLIFSLFVGL-LMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWSH 719
            K  L+ SL + +   V   S+  F + +  +W         +G  L   LD  SG+GF SK +YLFGK+ +++KLV G+SAGTVTA+Y+SS G   +E DFEFLGN TG PY + TNV+  G G+RE +  LWFDPT +FHTY++ WN   ++FLVD  PIRV  N E  G+ +PK+Q M +YSS+W ADDWAT+G RVK DWS+
Sbjct:    7 KQPLLLSLLLAIGFFVVAASAGNFYESFDITWGNGRANIFENGQLLTCTLDKVSGSGFQSKKEYLFGKIDMKLKLVAGNSAGTVTAYYLSSKGTAWDEIDFEFLGNRTGHPYTIHTNVFTGGKGDREMQFRLWFDPTADFHTYTVHWNPVNIIFLVDGIPIRVFKNNEKNGVAYPKNQPMRIYSSLWEADDWATEGGRVKIDWSN 211          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.425e-53
Identity = 99/200 (49.50%), Postives = 133/200 (66.50%), Query Frame = 3
Query:  120 SLIFSLFVGLLMVGLVS-SAKFDDLYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            +L+F L   L  +G     A F   +  +W  +H+  +G  L+L LD  +G+   SK  +LFG V + IKLV G+SAGTV A+Y+SS G  H+E DFEFLGN TG+PY + TN+Y  G GNREQ+   WF+PT  FH Y++ WN  +VV+ VD TPIRV  N E +GI +P  Q M V++S+WNA+DWATQG RVKT+W+
Sbjct:    8 TLMFVLAAALATLGRTFVEADFSKNFIVTWGKDHMFMNGTNLRLVLDKSAGSAIKSKVAHLFGSVEMLIKLVPGNSAGTVAAYYLSSTGSTHDEIDFEFLGNATGQPYTIHTNLYAQGKGNREQQFRPWFNPTNGFHNYTIHWNPSEVVWFVDGTPIRVFRNYESEGIAYPNKQGMKVFASLWNAEDWATQGGRVKTNWT 207          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.888e-51
Identity = 88/162 (54.32%), Postives = 118/162 (72.84%), Query Frame = 3
Query:  231 GDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            G+ L L+LD +SG+GF S  ++L+GKV +Q+KLV G+SAGTVT FY+ S G   +E DFEFLGN +G PY + TNVY  G G++EQ+  LWFDPT +FHTY ++WN ++V+F +D  PIR   N E  G+PFPK Q M +Y+S+W A+ WAT+G   KTDWS
Sbjct:   49 GNLLSLSLDKFSGSGFQSHQEFLYGKVEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVDFHTYCIIWNPQRVIFTIDGIPIREFKNSEALGVPFPKHQPMRLYASLWEAEHWATRGGLEKTDWS 210          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH19_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 19 OS=Arabidopsis thaliana GN=XTH19 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.786e-49
Identity = 86/162 (53.09%), Postives = 113/162 (69.75%), Query Frame = 3
Query:  231 GDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            G  L L+LD  SG+GF S  ++L+GK  +Q+KLV G+SAGTVT FY+ S G   +E DFEFLGN +G PY + TNVY  G G++EQ+  LWFDPT  FHTY + WN ++++F VD  PIR   N E +G+PFP  Q M +Y+S+W A+ WAT+G   KTDWS
Sbjct:   44 GKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGSGDKEQQFHLWFDPTANFHTYCITWNPQRIIFTVDGIPIREFMNAESRGVPFPTKQPMRLYASLWEAEHWATRGGLEKTDWS 205          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH18_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 18 OS=Arabidopsis thaliana GN=XTH18 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.639e-49
Identity = 87/163 (53.37%), Postives = 113/163 (69.33%), Query Frame = 3
Query:  228 DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            DG  L L+LD  SG+GF S  ++L+GK  +Q+KLV G+SAGTVT FY+ S G   +E DFEFLGN +G PY + TNVY  G G++EQ+  LWFDPT  FHTY + WN ++++F VD  PIR   N E  G+PFP  Q M +Y+S+W A+ WAT+G   KTDWS
Sbjct:   48 DGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNLSGHPYTLHTNVYTKGSGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNSESIGVPFPTKQPMRLYASLWEAEHWATRGGLEKTDWS 210          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH17_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana GN=XTH17 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.752e-49
Identity = 87/163 (53.37%), Postives = 113/163 (69.33%), Query Frame = 3
Query:  228 DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            DG  L L+LD  SG+GF S  ++L+GK  +Q+KLV G+SAGTVT FY+ S G   +E DFEFLGN +G PY + TNVY  G G++EQ+  LWFDPT  FHTY + WN ++++F VD  PIR   N E  G+PFP  Q M +Y+S+W A+ WAT+G   KTDWS
Sbjct:   48 DGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNPEAIGVPFPTRQPMRLYASLWEAEHWATRGGLEKTDWS 210          
The following BLAST results are available for this feature:
BLAST of FC920449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH24_ARATH4.014e-5652.55Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_BRAOB6.846e-5656.74Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH8_ARATH6.846e-5650.24Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH4_ARATH8.941e-5652.48Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH14_ARATH5.796e-5549.27Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH26_ARATH5.425e-5349.50Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH20_ARATH3.888e-5154.32Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH19_ARATH2.786e-4953.09Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH18_ARATH3.639e-4953.37Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH17_ARATH4.752e-4953.37Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC32008E10EF RVDevelop1 Citrus clementina cDNA clone C32008E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920449 ID=FC920449; Name=FC920449; organism=Citrus clementina; type=EST; length=719bp
GACAGATCAGCATTTCAAAGTATAAGCTTCAACTTCCCTCCACTTCACTG
GGCCTGCTCTGCTCATTCGCTTACTTCCTCTCCCCGTTCTTCTGTCTTCA
TTCTTCAATGGTTAAAATGTCTTTGATTTTCAGTCTGTTTGTGGGTCTTT
TAATGGTAGGTTTGGTCAGCTCAGCTAAGTTTGATGACCTTTATCAAACA
AGCTGGGCATTTAATCATGTTCAGTATGATGGGGACACTCTCAAGCTTAA
CCTCGATAATTATTCCGGAGCTGGGTTTGCGTCAAAGAGCAAGTATTTGT
TTGGGAAAGTCTCCATCCAAATTAAACTTGTAGGGGGTGACTCTGCTGGA
ACTGTCACTGCCTTCTATATGTCATCAGACGGTCCAAATCACAACGAGTT
CGATTTTGAGTTCCTGGGGAACACTACAGGAGAGCCATACTTAGTCCAAA
CCAATGTTTATGTGAATGGTGTGGGCAACAGAGAGCAGAGACTTGACCTC
TGGTTCGACCCAACAAAGGAATTTCATACCTATTCCCTCCTTTGGAACCA
GCGCCAAGTTGTATTTTTGGTGGATGAGACCCCAATTAGAGTGCACACTA
ACTTGGAGCACAAAGGAATTCCCTTCCCCAAGGACCAAGCCATGGGTGTG
TACAGTTCAATATGGAATGCTGATGACTGGGCCACACAGGGGGAAAGGGT
CAAGACGGACTGGAGCCAT
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