FC920449

Overview
NameFC920449
Unique NameFC920449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9467 contig Ccv1_Contig9467:10..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.176e-31
Identity = 68/189 (35.98%), Postives = 108/189 (57.14%), Query Frame = 3
Query:  168 SSAKFDDLYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGP---NHNEFDFEFLGNTTGEPYLVQTNVYVNGVGN--REQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWSH 719
            S    ++ +   +  +++Q +G   KL LD  SGAG  SK+KY +G  S ++KL  G ++G V AFY+S+      +H+E D E LG +  + + +QTNVY NG     RE++   WFDPT+ FH Y+L+WN    VFLVD  P+R   N       +P  + M +Y ++W+  +WAT+G +   ++ +
Sbjct:   39 SKIAIENGFSRRFGAHNIQVNGSLAKLTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYLSNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPNRGAFTSAYP-SKPMSLYVTVWDGSEWATKGGKYPVNYKY 226          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.134e-29
Identity = 63/143 (44.06%), Postives = 92/143 (64.34%), Query Frame = 3
Query:  240 LKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWN 668
            L+L LD  SG+GF S+  Y  G  +++IK     S G +T+FY+ S    H+E  F+ LG   G PYL+ TN+Y+ G G ++QR  LWFDPTK++H+YS LWN  Q+VF VD+TPIRV++  ++  + +P  Q M +  S+ N
Sbjct:   45 LQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSRHDELCFQILGKN-GPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYS--KNPDVYYPSVQTMFLMGSVQN 184          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: GUB_ORPSP (Beta-glucanase OS=Orpinomyces sp. (strain PC-2) GN=licA PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 51/175 (29.14%), Postives = 83/175 (47.43%), Query Frame = 3
Query:  186 DLYQTSWAFNHVQYDGDTLKLNLDN----YSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYM---SSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWN---ADDW 680
            +++   W  N+ +++   LKL +D     Y+   + +K+ Y +G   + +K +   + G V++F+     SDG   +E D EFLG  T +   VQ N Y NG G+ E    L FD ++ FHTY   W +  + + VD T +       +  IP   D    +  + WN    DDW
Sbjct:   59 EMFNCRWTPNNDKFENGKLKLTIDRDGSGYTCGEYRTKNYYGYGMFQVNMKPI--KNPGVVSSFFTYTGPSDGTKWDEIDIEFLGYDTTK---VQFNYYTNGQGHHEHIHYLGFDASQGFHTYGFFWARNSITWYVDGTAVYT----AYDNIP---DTPGKIMMNAWNGIGVDDW 221          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: GUB_PAEMA (Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.352e-11
Identity = 53/177 (29.94%), Postives = 82/177 (46.33%), Query Frame = 3
Query:  189 LYQTSWAFNHVQYDGD-TLKLNL-----DNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNH----NEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWN---ADDW 680
            ++  +W  N+V +  D  LKL L     + +  A + S + Y +G   + +K     + G V++F+  + GP H    +E D EFLG  T +   VQ N Y NGVG  E+ + L FD +K FHTY+  W    + + VD         L+H            +  ++WN    DDW
Sbjct:   52 VFNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYT-GPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV-------LKHTATANIPSTPGKIMMNLWNGTGVDDW 215          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: GUB_PAEPO (Beta-glucanase OS=Paenibacillus polymyxa GN=gluB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = 3
Query:  189 LYQTSWAFNHVQYDGD-TLKLNL-----DNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNH----NEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVD 575
            ++  +W  N+V +  D  LKL+L     + +    + S + Y +G   + +K     + G V++F+  + GP+H    +E D EFLG  T +   VQ N Y NGVG  E+ ++L FD +  FHTY+  W    + + VD
Sbjct:   53 MFNCTWRANNVNFTNDGKLKLSLTSPANNKFDCGEYRSTNNYGYGLYEVSMK--PAKNTGIVSSFFTYT-GPSHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKIINLGFDASTSFHTYAFDWQPGYIKWYVD 185          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: GUB_CLOTH (Beta-glucanase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=licB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 44/138 (31.88%), Postives = 66/138 (47.83%), Query Frame = 3
Query:  189 LYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKS-----KYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHN----EFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVD 575
            ++   W  + V +    + L LD   G  +  KS     K  FG    ++++    + G V++F+  + GP+ N    E D EFLG  T +   VQ N Y NGVG  E   +L FD +++FHTY   W    + F VD
Sbjct:   59 VFNCVWKPSQVTFSNGKMILTLDREYGGSYPYKSGEYRTKSFFGYGYYEVRMKAAKNVGIVSSFFTYT-GPSDNNPWDEIDIEFLGKDTTK---VQFNWYKNGVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVD 192          
The following BLAST results are available for this feature:
BLAST of FC920449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH33_ARATH1.176e-3135.98Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH7.134e-2944.06Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_ORPSP3.217e-1329.14Beta-glucanase OS=Orpinomyces sp. (strain PC-2) GN... [more]
GUB_PAEMA1.352e-1129.94Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2[more]
GUB_PAEPO5.136e-1131.65Beta-glucanase OS=Paenibacillus polymyxa GN=gluB P... [more]
GUB_CLOTH6.708e-1131.88Beta-glucanase OS=Clostridium thermocellum (strain... [more]

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Properties
Property NameValue
Genbank descriptionC32008E10EF RVDevelop1 Citrus clementina cDNA clone C32008E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920449 ID=FC920449; Name=FC920449; organism=Citrus clementina; type=EST; length=719bp
GACAGATCAGCATTTCAAAGTATAAGCTTCAACTTCCCTCCACTTCACTG
GGCCTGCTCTGCTCATTCGCTTACTTCCTCTCCCCGTTCTTCTGTCTTCA
TTCTTCAATGGTTAAAATGTCTTTGATTTTCAGTCTGTTTGTGGGTCTTT
TAATGGTAGGTTTGGTCAGCTCAGCTAAGTTTGATGACCTTTATCAAACA
AGCTGGGCATTTAATCATGTTCAGTATGATGGGGACACTCTCAAGCTTAA
CCTCGATAATTATTCCGGAGCTGGGTTTGCGTCAAAGAGCAAGTATTTGT
TTGGGAAAGTCTCCATCCAAATTAAACTTGTAGGGGGTGACTCTGCTGGA
ACTGTCACTGCCTTCTATATGTCATCAGACGGTCCAAATCACAACGAGTT
CGATTTTGAGTTCCTGGGGAACACTACAGGAGAGCCATACTTAGTCCAAA
CCAATGTTTATGTGAATGGTGTGGGCAACAGAGAGCAGAGACTTGACCTC
TGGTTCGACCCAACAAAGGAATTTCATACCTATTCCCTCCTTTGGAACCA
GCGCCAAGTTGTATTTTTGGTGGATGAGACCCCAATTAGAGTGCACACTA
ACTTGGAGCACAAAGGAATTCCCTTCCCCAAGGACCAAGCCATGGGTGTG
TACAGTTCAATATGGAATGCTGATGACTGGGCCACACAGGGGGAAAGGGT
CAAGACGGACTGGAGCCAT
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