FC920451

Overview
NameFC920451
Unique NameFC920451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_SYNJA (Probable 30S ribosomal protein PSRP-3 OS=Synechococcus sp. (strain JA-3-3Ab) GN=CYA_0331 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = 2
Query:  341 PRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 574
            P+  LK +W+E ++ +A+DQ +      PL++YFFWPR DAWE+LK  LESK WIS++  I LLNQAT++IN WQ  G
Sbjct:    2 PKFALKALWLENDLAIAVDQVV-AKNRSPLTRYFFWPRDDAWEQLKAELESKTWISEEDRITLLNQATELINYWQNGG 78          
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_EUGST (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena stellata GN=ycf65 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19
Identity = 39/73 (53.42%), Postives = 56/73 (76.71%), Query Frame = 2
Query:  350 VLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 568
            +LKF+W+EK++ + LDQ I G  T P++++FFWP+ DAWEE+K  LE K WI Q  ++ILLNQ T++IN WQ+
Sbjct:    5 ILKFLWLEKSVAVGLDQKI-GDRTTPVTEFFFWPQHDAWEEMKNFLEDKSWIDQSEVVILLNQITEVINYWQE 76          
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_PROMP (Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=PMM1440 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 41/90 (45.56%), Postives = 61/90 (67.78%), Query Frame = 2
Query:  314 GVSVKQLEKP---RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 574
            GV      KP   R ++K +W+  N+ LA+DQ + G G+ PL+ Y+FWPR DAWE+LK+ LE+K WI+    + +LN+AT++IN WQ+ G
Sbjct:   17 GVPTGYTPKPDEGRFIIKILWLPDNVALAVDQIVGG-GSSPLTAYYFWPRDDAWEKLKSELENKSWITDNERVEILNKATEVINYWQEEG 105          
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_GRATL (Probable 30S ribosomal protein 3, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=ycf65 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 2
Query:  344 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 580
            +   K +W+E NI +A+D  I G    PL+ YFFWPR DAWEELK  LESKPWI++   + LLN+ T+IIN WQ+   N
Sbjct:    3 KFTFKILWLENNIAIAIDYNI-GNNKSPLTSYFFWPRNDAWEELKIELESKPWINKNEKVDLLNKTTEIINFWQEKEKN 80          
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_SYNJB (Probable 30S ribosomal protein PSRP-3 OS=Synechococcus sp. GN=CYB_1711 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.503e-18
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 2
Query:  341 PRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 580
            P+  LK +W+E ++ +A+DQ +      PL+ YFFWPR DAWE+LK  LESK WIS+   I LLN+AT++IN WQ  G N
Sbjct:    2 PKFALKALWLENDLAIAVDQVV-AKNRSPLTHYFFWPRDDAWEQLKAELESKTWISEVDRIELLNRATELINYWQNGGRN 80          
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_SYNY3 (Probable 30S ribosomal protein PSRP-3 OS=Synechocystis sp. (strain PCC 6803) GN=slr0923 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.269e-18
Identity = 38/72 (52.78%), Postives = 56/72 (77.78%), Query Frame = 2
Query:  350 VLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQ 565
            +LK +W+++N+ +A+DQ + G GT PL+ YFFWPR DAW++LK  LE+K WI++   I +LNQAT++IN WQ
Sbjct:   15 ILKVLWLDQNVAIAVDQIV-GKGTSPLTSYFFWPRADAWQQLKDELEAKHWIAEADRINVLNQATEVINFWQ 85          
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_PROMM (Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus (strain MIT 9313) GN=PMT_1454 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.575e-18
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 2
Query:  335 EKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 574
            ++ R +LK +W+  N+ LA+DQ + G G  PL+ YFFWPR+DAWE LK  LE K WI+    + +LN+AT++IN WQ+ G
Sbjct:   27 DEGRFLLKILWLPDNVALAVDQIVGG-GPSPLTAYFFWPREDAWETLKGELEGKSWITDNERVEVLNKATEVINYWQEEG 105          
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_EUGVI (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena viridis GN=ycf65 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17
Identity = 37/75 (49.33%), Postives = 57/75 (76.00%), Query Frame = 2
Query:  344 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 568
            + VLKF+W+++++ ++LDQ I G    PL++++FWP+ DAWEE++  LESK WI+    I+LLNQ T+IIN WQ+
Sbjct:    3 KFVLKFLWLQRSVAVSLDQKI-GDNVSPLTEFYFWPQCDAWEEMRNFLESKSWINSSESILLLNQVTEIINDWQE 76          
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_EUGMU (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena mutabilis GN=ycf65 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 2
Query:  344 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQS 571
            R VLKF+ ++K I + LDQ I      PL++YFFWP++DAWE++K  +++  WI  K  + +LN+ T++IN W++S
Sbjct:    3 RFVLKFLLIDKVIAVCLDQKISNERLNPLTEYFFWPQRDAWEDMKNFIDNNDWIDPKDAVNILNRITEVINFWEES 78          
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_CYACA (Probable 30S ribosomal protein 3, chloroplastic OS=Cyanidium caldarium GN=ycf65 PE=3 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 2
Query:  353 LKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQS 571
            +K +W+  NI +A+D+ I G    P++ Y+FWPR DAWE+LK  L+S+P +  K  +++LNQ T II+ WQ++
Sbjct:    6 IKVLWLRNNIAIAVDRLI-GDSLFPMTYYYFWPRTDAWEQLKIELDSQPGLFAKDKVVILNQVTRIIDYWQEN 77          
The following BLAST results are available for this feature:
BLAST of FC920451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RRP3_SYNJA5.043e-1952.56Probable 30S ribosomal protein PSRP-3 OS=Synechoco... [more]
RRP3_EUGST6.586e-1953.42Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_PROMP1.467e-1845.56Probable 30S ribosomal protein PSRP-3 OS=Prochloro... [more]
RRP3_GRATL1.467e-1851.90Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_SYNJB2.503e-1851.25Probable 30S ribosomal protein PSRP-3 OS=Synechoco... [more]
RRP3_SYNY33.269e-1852.78Probable 30S ribosomal protein PSRP-3 OS=Synechocy... [more]
RRP3_PROMM5.575e-1848.75Probable 30S ribosomal protein PSRP-3 OS=Prochloro... [more]
RRP3_EUGVI3.614e-1749.33Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_EUGMU4.418e-1543.42Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_CYACA8.331e-1443.84Probable 30S ribosomal protein 3, chloroplastic OS... [more]

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Properties
Property NameValue
Genbank descriptionC32008E12EF RVDevelop1 Citrus clementina cDNA clone C32008E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920451 ID=FC920451; Name=FC920451; organism=Citrus clementina; type=EST; length=714bp
GGAGGAGTGAACTGGTTGATAAACAAACAAATCTGTGCTTGCTCTCCTTC
TCTTTGAAGAACACAAAATGTTATCATCAATGGCACTTCAATCTACTGTT
AATGGTGCATTCACCACACGCTCCTCATTCCCTTCCCAAAAACTCACTGT
CAAACCCACCAAAACCACCATTCTTCACCAAAATAGAACCAAACCCATTT
CAAGAAACCAAAGGCTCGTTGCTTTAGCAACCCCAGAATCACTCACAGCT
GAAGAAGCAACAACAACATCCACAGAGACCATCCCAGCAACCCCAGTAGA
AACTAAGAAGGCGGGGGTGTCAGTGAAGCAATTGGAGAAGCCAAGGCTGG
TATTGAAGTTTATATGGATGGAGAAGAACATTGGTCTAGCTCTTGACCAG
ACGATACCTGGGTATGGCACCATTCCTTTGAGTCAATACTTCTTTTGGCC
GAGAAAAGATGCATGGGAAGAGCTCAAGACAACTCTTGAGAGCAAACCCT
GGATTTCCCAGAAAATGATGATTATACTTCTAAATCAGGCCACTGATATT
ATCAATTTGTGGCAGCAGAGCGGTGGCAATCTTACTACTTAGTTGGATGA
AAATTCCGGTTTCTCTGTGAGTTCTCATCGTTTTTGTATTTCAGTTATTG
GATTTGATTTGTATAATTGAAACCTTGNTCACATCTGCAGGAAAAAAAAA
AAAAAAAAAAAAAA
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