FC920451
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_SYNJA (Probable 30S ribosomal protein PSRP-3 OS=Synechococcus sp. (strain JA-3-3Ab) GN=CYA_0331 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19 Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = 2 Query: 341 PRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 574 P+ LK +W+E ++ +A+DQ + PL++YFFWPR DAWE+LK LESK WIS++ I LLNQAT++IN WQ G Sbjct: 2 PKFALKALWLENDLAIAVDQVV-AKNRSPLTRYFFWPRDDAWEQLKAELESKTWISEEDRITLLNQATELINYWQNGG 78
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_EUGST (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena stellata GN=ycf65 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19 Identity = 39/73 (53.42%), Postives = 56/73 (76.71%), Query Frame = 2 Query: 350 VLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 568 +LKF+W+EK++ + LDQ I G T P++++FFWP+ DAWEE+K LE K WI Q ++ILLNQ T++IN WQ+ Sbjct: 5 ILKFLWLEKSVAVGLDQKI-GDRTTPVTEFFFWPQHDAWEEMKNFLEDKSWIDQSEVVILLNQITEVINYWQE 76
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_PROMP (Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=PMM1440 PE=3 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18 Identity = 41/90 (45.56%), Postives = 61/90 (67.78%), Query Frame = 2 Query: 314 GVSVKQLEKP---RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 574 GV KP R ++K +W+ N+ LA+DQ + G G+ PL+ Y+FWPR DAWE+LK+ LE+K WI+ + +LN+AT++IN WQ+ G Sbjct: 17 GVPTGYTPKPDEGRFIIKILWLPDNVALAVDQIVGG-GSSPLTAYYFWPRDDAWEKLKSELENKSWITDNERVEILNKATEVINYWQEEG 105
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_GRATL (Probable 30S ribosomal protein 3, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=ycf65 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18 Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 2 Query: 344 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 580 + K +W+E NI +A+D I G PL+ YFFWPR DAWEELK LESKPWI++ + LLN+ T+IIN WQ+ N Sbjct: 3 KFTFKILWLENNIAIAIDYNI-GNNKSPLTSYFFWPRNDAWEELKIELESKPWINKNEKVDLLNKTTEIINFWQEKEKN 80
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_SYNJB (Probable 30S ribosomal protein PSRP-3 OS=Synechococcus sp. GN=CYB_1711 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.503e-18 Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 2 Query: 341 PRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 580 P+ LK +W+E ++ +A+DQ + PL+ YFFWPR DAWE+LK LESK WIS+ I LLN+AT++IN WQ G N Sbjct: 2 PKFALKALWLENDLAIAVDQVV-AKNRSPLTHYFFWPRDDAWEQLKAELESKTWISEVDRIELLNRATELINYWQNGGRN 80
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_SYNY3 (Probable 30S ribosomal protein PSRP-3 OS=Synechocystis sp. (strain PCC 6803) GN=slr0923 PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.269e-18 Identity = 38/72 (52.78%), Postives = 56/72 (77.78%), Query Frame = 2 Query: 350 VLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQ 565 +LK +W+++N+ +A+DQ + G GT PL+ YFFWPR DAW++LK LE+K WI++ I +LNQAT++IN WQ Sbjct: 15 ILKVLWLDQNVAIAVDQIV-GKGTSPLTSYFFWPRADAWQQLKDELEAKHWIAEADRINVLNQATEVINFWQ 85
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_PROMM (Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus (strain MIT 9313) GN=PMT_1454 PE=3 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 5.575e-18 Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 2 Query: 335 EKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 574 ++ R +LK +W+ N+ LA+DQ + G G PL+ YFFWPR+DAWE LK LE K WI+ + +LN+AT++IN WQ+ G Sbjct: 27 DEGRFLLKILWLPDNVALAVDQIVGG-GPSPLTAYFFWPREDAWETLKGELEGKSWITDNERVEVLNKATEVINYWQEEG 105
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_EUGVI (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena viridis GN=ycf65 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17 Identity = 37/75 (49.33%), Postives = 57/75 (76.00%), Query Frame = 2 Query: 344 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 568 + VLKF+W+++++ ++LDQ I G PL++++FWP+ DAWEE++ LESK WI+ I+LLNQ T+IIN WQ+ Sbjct: 3 KFVLKFLWLQRSVAVSLDQKI-GDNVSPLTEFYFWPQCDAWEEMRNFLESKSWINSSESILLLNQVTEIINDWQE 76
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_EUGMU (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena mutabilis GN=ycf65 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15 Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 2 Query: 344 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQS 571 R VLKF+ ++K I + LDQ I PL++YFFWP++DAWE++K +++ WI K + +LN+ T++IN W++S Sbjct: 3 RFVLKFLLIDKVIAVCLDQKISNERLNPLTEYFFWPQRDAWEDMKNFIDNNDWIDPKDAVNILNRITEVINFWEES 78
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_CYACA (Probable 30S ribosomal protein 3, chloroplastic OS=Cyanidium caldarium GN=ycf65 PE=3 SV=3) HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14 Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 2 Query: 353 LKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQS 571 +K +W+ NI +A+D+ I G P++ Y+FWPR DAWE+LK L+S+P + K +++LNQ T II+ WQ++ Sbjct: 6 IKVLWLRNNIAIAVDRLI-GDSLFPMTYYYFWPRTDAWEQLKIELDSQPGLFAKDKVVILNQVTRIIDYWQEN 77 The following BLAST results are available for this feature:
BLAST of FC920451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 31
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920451 ID=FC920451; Name=FC920451; organism=Citrus clementina; type=EST; length=714bpback to top |