FC920451

Overview
NameFC920451
Unique NameFC920451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920451 vs. ExPASy Swiss-Prot
Match: RRP3_EUGMY (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena myxocylindracea GN=ycf65 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.421e-13
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 2 
Query:  356 KFIW----MEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 568
            KF+W    +E  I + LDQ +    T P+++YFFWP+ DAW+EL   LESKPWI+    I +LN  TD+IN W +
Sbjct:    3 KFVWKVVCLENKIAICLDQQLADK-TSPVTEYFFWPQSDAWDELNKLLESKPWITLSNRIFVLNILTDLINYWDE 76
The following BLAST results are available for this feature:
BLAST of FC920451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RRP3_EUGMY1.421e-1346.67Probable 30S ribosomal protein 3, chloroplastic OS... [more]

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Properties
Property NameValue
Genbank descriptionC32008E12EF RVDevelop1 Citrus clementina cDNA clone C32008E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920451 ID=FC920451; Name=FC920451; organism=Citrus clementina; type=EST; length=714bp
GGAGGAGTGAACTGGTTGATAAACAAACAAATCTGTGCTTGCTCTCCTTC
TCTTTGAAGAACACAAAATGTTATCATCAATGGCACTTCAATCTACTGTT
AATGGTGCATTCACCACACGCTCCTCATTCCCTTCCCAAAAACTCACTGT
CAAACCCACCAAAACCACCATTCTTCACCAAAATAGAACCAAACCCATTT
CAAGAAACCAAAGGCTCGTTGCTTTAGCAACCCCAGAATCACTCACAGCT
GAAGAAGCAACAACAACATCCACAGAGACCATCCCAGCAACCCCAGTAGA
AACTAAGAAGGCGGGGGTGTCAGTGAAGCAATTGGAGAAGCCAAGGCTGG
TATTGAAGTTTATATGGATGGAGAAGAACATTGGTCTAGCTCTTGACCAG
ACGATACCTGGGTATGGCACCATTCCTTTGAGTCAATACTTCTTTTGGCC
GAGAAAAGATGCATGGGAAGAGCTCAAGACAACTCTTGAGAGCAAACCCT
GGATTTCCCAGAAAATGATGATTATACTTCTAAATCAGGCCACTGATATT
ATCAATTTGTGGCAGCAGAGCGGTGGCAATCTTACTACTTAGTTGGATGA
AAATTCCGGTTTCTCTGTGAGTTCTCATCGTTTTTGTATTTCAGTTATTG
GATTTGATTTGTATAATTGAAACCTTGNTCACATCTGCAGGAAAAAAAAA
AAAAAAAAAAAAAA
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