FC920454

Overview
NameFC920454
Unique NameFC920454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14655 contig Ccv1_Contig14655:59..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC920454 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.183e-32
Identity = 78/188 (41.49%), Postives = 115/188 (61.17%), Query Frame = 1 
Query:   85 SKSKILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVNFLVGDVLNHESLVKAIKQ--VDVVISTVGHTLIADQVKIIAAIKEAGNVKRFFPSEFGNDVDRVHGAVEPTKSTYDVKANIRRAVEAEGIPYTYVESYFFDGYFLPNLLQPGATAPPRDKVVIFGDGNQKLF 642
            +K++ L +GGTG+IG+FI +AS+  G+PTF+LVR   VS PSK+ ++  F++ G   + G + + E + K +K+  +DVVIS VG   + DQ+ ++ AIK    +KRF PSEFG+DVDR    VEP  + Y  K  +RRAVE  GIP+T +       +   +   P    PP D+  I+GDGN K +
Sbjct:   11 TKNRTLVVGGTGFIGQFITKASLGFGYPTFLLVRPGPVS-PSKAVIIKTFQDKGAKVIYGVINDKECMEKILKEYEIDVVISLVGGARLLDQLTLLEAIKSVKTIKRFLPSEFGHDVDRT-DPVEPGLTMYKEKRLVRRAVEEYGIPFTNICCNSIASWPYYDNCHPSQVPPPMDQFQIYGDGNTKAY 196
The following BLAST results are available for this feature:
BLAST of FC920454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAR_DESUN1.183e-3241.49Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

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Properties
Property NameValue
Genbank descriptionC32008F03EF RVDevelop1 Citrus clementina cDNA clone C32008F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920454 ID=FC920454; Name=FC920454; organism=Citrus clementina; type=EST; length=658bp
GATTTTAGTCCATTTAATCAAACGTAAAAGTGCGGCTACCAGCTAACTCT
CCGGAATTGAACTGAACGAGTTTCAGAAATGGCATCGAAAAGCAAGATTC
TATCCATCGGCGGGACAGGGTATATCGGTAAATTCATCGTGGAAGCTAGC
GTGAAAGCCGGCCACCCGACGTTCGTGCTCGTGAGGGAATCCACAGTCTC
TGGTCCTTCCAAATCTCAGCTCCTCGACCACTTCAAAAACCTCGGCGTCA
ATTTCCTTGTCGGAGATGTTTTGAATCACGAGAGCTTGGTGAAGGCGATA
AAACAAGTGGACGTGGTGATATCAACAGTTGGTCACACTTTAATAGCCGA
TCAGGTCAAGATTATTGCTGCCATTAAAGAAGCCGGTAACGTTAAGAGAT
TCTTCCCATCGGAATTTGGAAATGATGTTGATCGAGTCCATGGCGCCGTG
GAGCCAACAAAATCGACGTATGACGTAAAGGCGAACATCCGCCGAGCCGT
TGAGGCAGAAGGCATTCCGTACACGTACGTAGAATCTTATTTTTTTGATG
GCTACTTCCTCCCTAATTTGTTGCAGCCTGGGGCCACTGCCCCCCCTAGG
GATAAGGTTGTCATCTTCGGCGATGGNAATCAAAAGCTGTTTTTAACAGG
AAGATGAT
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