FC920456

Overview
NameFC920456
Unique NameFC920456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2783 contig Ccv1_Contig2783:1..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: GBLP_HYDAT (Guanine nucleotide-binding protein subunit beta-like protein OS=Hydra attenuata GN=RACK1 PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 6.135e-78
Identity = 138/207 (66.67%), Postives = 167/207 (80.68%), Query Frame = 1
Query:   82 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKT-YGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLC 699
            E + L+GT++ H   VT IAT   N D+I++ASRDK++I W LT++++T YG  ++ LTGH+HFV DVVLSSDGQFALS SWD  LRLWDL +G + ++FVGHTKDVLSVAFS DNRQIVS SRD TIKLWNTLG+CKYTIQ+ ++H+EWVSCVRFSPNT  P IVS  WD+ VKVWNL+NCKL+    GHTGY+N V VSPDGSLC
Sbjct:    2 EQMTLRGTLKGHNGWVTQIATTPQNPDLILSASRDKTLIQWQLTRDDQTNYGFPKKCLTGHNHFVSDVVLSSDGQFALSCSWDKTLRLWDLNQGITTKQFVGHTKDVLSVAFSADNRQIVSGSRDNTIKLWNTLGQCKYTIQD-ESHSEWVSCVRFSPNTQNPIIVSCGWDKMVKVWNLTNCKLKTNHFGHTGYLNAVTVSPDGSLC 207          
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: GBLP_DICDI (Guanine nucleotide-binding protein subunit beta-like protein OS=Dictyostelium discoideum GN=gpbB PE=1 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.113e-70
Identity = 125/201 (62.19%), Postives = 154/201 (76.62%), Query Frame = 1
Query:  100 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTY-GVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLC 699
            G++  H   VT+IA   +N D I+++SRDK+++VW LT  + T  G A R L GHSHFVQDVV+S DGQFALSGSWD  LRLWD+ +G S R F GHT+DV+SVAFS DNRQI+S SRD TIK+WNTLGECK+T++  +AH +WVSC+RFSPNT  PTIVS SWD  VK+W++ + K   TL  HTGYVNTV +SPDGSLC
Sbjct:   15 GSLVGHNGFVTSIAVSPENPDTIISSSRDKTVMVWQLTPTDATSPGKAHRSLKGHSHFVQDVVISHDGQFALSGSWDNTLRLWDITKGVSTRLFKGHTQDVMSVAFSSDNRQIISGSRDATIKVWNTLGECKFTLEGPEAHQDWVSCIRFSPNT--PTIVSGSWDNKVKIWDIKSFKCNHTLTDHTGYVNTVTISPDGSLC 213          
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: GBLP_CAEEL (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Caenorhabditis elegans GN=rack-1 PE=1 SV=3)

HSP 1 Score: 265.003 bits (676), Expect = 2.760e-70
Identity = 132/211 (62.56%), Postives = 156/211 (73.93%), Query Frame = 1
Query:   82 EGLVLKGTMRAHTDMVTAIATPIDNSDM-IVTASRDKSIIVWHLTK----EEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLC 699
            E + L GT+  HT  VT IAT   N    ++++SRDK+I+VW +      +E   G   R LTGH+HFV DVV+SSDGQFALSGSWD  LRLWDL +G S R+F+ HTKDVLSVAFS DNRQIVS SRD++IKLWNTL +CKYTI + D HT+WVS VRFSP+   P IVSA WD+ VKVWNL NC+L+    GHTGYVNTV VSPDGSLC
Sbjct:    4 EQMKLTGTLEGHTGWVTQIATYTRNDKTTVLSSSRDKTILVWDVDSVAPVDEGPIGRPVRSLTGHNHFVSDVVISSDGQFALSGSWDKTLRLWDLNQGVSTRQFISHTKDVLSVAFSADNRQIVSGSRDKSIKLWNTLAQCKYTITD-DCHTDWVSTVRFSPSNRDPVIVSAGWDKVVKVWNLGNCRLKTNHIGHTGYVNTVTVSPDGSLC 213          
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: GBLP_SCHPO (Guanine nucleotide-binding protein subunit beta-like protein OS=Schizosaccharomyces pombe GN=rkp1 PE=1 SV=3)

HSP 1 Score: 262.307 bits (669), Expect = 1.789e-69
Identity = 121/208 (58.17%), Postives = 156/208 (75.00%), Query Frame = 1
Query:   76 MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLC 699
            M E LVL+ T+  H+  VT+++T  +N D++++ SRDKSII+W+L +++  YGVA+RRLTGHSHFV D  LS D  +ALS SWD  +RLWDL +G+   +FVGHT DVLSV+ S DNRQ+VS SRD+TIK+WN +G CKYTI +G  H++WVSCVRFSPN    T VSA WD+ VKVW+L    LR +  GHTGYV+ V +SPDGSLC
Sbjct:    1 MPEQLVLRATLEGHSGWVTSLSTAPENPDILLSGSRDKSIILWNLVRDDVNYGVAQRRLTGHSHFVSDCALSFDSHYALSASWDKTIRLWDLEKGECTHQFVGHTSDVLSVSISPDNRQVVSGSRDKTIKIWNIIGNCKYTITDG-GHSDWVSCVRFSPNPDNLTFVSAGWDKAVKVWDLETFSLRTSHYGHTGYVSAVTISPDGSLC 207          
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: GBLP_TRYBR (Guanine nucleotide-binding protein subunit beta-like protein OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.053e-56
Identity = 108/207 (52.17%), Postives = 140/207 (67.63%), Query Frame = 1
Query:   97 KGTMRAHTDMVTAIATPI--DNSDMIVTASRDKSIIVWHLTKE----EKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLC 699
            +G +  H   VT++A P   + +  +V+ SRDK+++ W    +    E +YG+  RRL GHS FV DV LS++G FA+S SWD  LRLW+L  G+   +F+GHTKDVLSVAFS DNRQIVS  RD  +++WN  GEC +T+  G AHT+WVSCVRFSP+   P IVS  WD  VKVW+L+  +L   L GHT YV +V VSPDGSLC
Sbjct:    6 EGQLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRG-AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLC 211          

HSP 2 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 61/203 (30.05%), Postives = 98/203 (48.28%), Query Frame = 1
Query:  115 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSS--DGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA-GHTGYVN------TVAVSPDGS 693
            HT  V ++A   DN   IV+  RD ++ VW++ K E  + ++R     H+ +V  V  S   D    +SG WD  +++WDLA G+      GHT  V SV  S D     S+ +D   +LW+ T GE    +  G      ++ + FSPN      + A+ ++ +++++L N  +   LA  H G         ++A S DGS
Sbjct:  108 HTKDVLSVAFSPDNRQ-IVSGGRDNALRVWNV-KGECMHTLSRG---AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAP----INQICFSPNRYW---MCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGS 298          
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: GBLP_TRYBB (Guanine nucleotide-binding protein subunit beta-like protein OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.053e-56
Identity = 108/207 (52.17%), Postives = 140/207 (67.63%), Query Frame = 1
Query:   97 KGTMRAHTDMVTAIATPI--DNSDMIVTASRDKSIIVWHLTKE----EKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLC 699
            +G +  H   VT++A P   + +  +V+ SRDK+++ W    +    E +YG+  RRL GHS FV DV LS++G FA+S SWD  LRLW+L  G+   +F+GHTKDVLSVAFS DNRQIVS  RD  +++WN  GEC +T+  G AHT+WVSCVRFSP+   P IVS  WD  VKVW+L+  +L   L GHT YV +V VSPDGSLC
Sbjct:    6 EGQLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRG-AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLC 211          

HSP 2 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 61/203 (30.05%), Postives = 98/203 (48.28%), Query Frame = 1
Query:  115 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSS--DGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA-GHTGYVN------TVAVSPDGS 693
            HT  V ++A   DN   IV+  RD ++ VW++ K E  + ++R     H+ +V  V  S   D    +SG WD  +++WDLA G+      GHT  V SV  S D     S+ +D   +LW+ T GE    +  G      ++ + FSPN      + A+ ++ +++++L N  +   LA  H G         ++A S DGS
Sbjct:  108 HTKDVLSVAFSPDNRQ-IVSGGRDNALRVWNV-KGECMHTLSRG---AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAP----INQICFSPNRYW---MCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGS 298          
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: GBLP_LEIMA (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania major PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.065e-48
Identity = 95/207 (45.89%), Postives = 129/207 (62.32%), Query Frame = 1
Query:   97 KGTMRAHTDMVTAIATPIDNSDMI--VTASRDKSIIVWHLTKE----EKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLC 699
            +G ++ H   VT++A P      I  V+ SRD ++I W    +    +  YG+   RL GH+ FV  V L+    +AL+ SWD  +R+WDL  G+  R+F+ HTKDVL+VAFS D+R IVSA RD  I++WN  GEC +     D H +WVS + FSP+   P +VS SWD T+KVWN++  K   TL GH+ YV+TV VSPDGSLC
Sbjct:    4 EGHLKGHRGWVTSLACPQQAGSYIKVVSTSRDGTVISWKANPDRHSVDSDYGLPNHRLEGHTGFVSCVSLAHATDYALTASWDRSIRMWDLRNGQCQRKFLKHTKDVLAVAFSPDDRLIVSAGRDNVIRVWNVAGECMHEFLR-DGHEDWVSSICFSPSLEHPIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLC 209          
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: GBLP_YEAST (Guanine nucleotide-binding protein subunit beta-like protein OS=Saccharomyces cerevisiae GN=ASC1 PE=1 SV=4)

HSP 1 Score: 190.66 bits (483), Expect = 6.615e-48
Identity = 95/209 (45.45%), Postives = 132/209 (63.16%), Query Frame = 1
Query:   82 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL----QPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 696
            E LVL+GT+  H   VT++AT     +++++ASRDK++I W LT +++ +GV  R   GHSH VQD  L++DG +ALS SWD  LRLWD+A G++ +RFVGH  DV+SV        I+S SRD+TIK+W   G+C  T+     H +WVS VR  PN        TI+SA  D+ VK WNL+  ++ A   GH   +NT+  SPDG+L
Sbjct:    5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210          
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: GBLP_LEIIN (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.925e-47
Identity = 95/207 (45.89%), Postives = 128/207 (61.84%), Query Frame = 1
Query:   97 KGTMRAHTDMVTAIATPIDNSDMI--VTASRDKSIIVWHLTKE----EKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLC 699
            +G ++ H   VT++A P      I  V+ SRD + I W    +    +  YG+   RL GH+ FV  V L+    +AL+ SWD  +R+WDL  G+  R+F+ HTKDVL+VAFS D+R IVSA RD  I++WN  GEC +     D H +WVS + FSP+   P +VS SWD T+KVWN++  K   TL GH+ YV+TV VSPDGSLC
Sbjct:    4 EGHLKGHRGWVTSLACPQQAGSYIKVVSTSRDGTAISWKANPDRHSVDSDYGLPSHRLEGHTGFVSCVSLAHATDYALTASWDRSIRMWDLRNGQCQRKFLKHTKDVLAVAFSPDDRLIVSAGRDNVIRVWNVAGECMHEFLR-DGHEDWVSSICFSPSLEHPIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLC 209          
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: GBLP_LEICH (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania chagasi PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.925e-47
Identity = 95/207 (45.89%), Postives = 128/207 (61.84%), Query Frame = 1
Query:   97 KGTMRAHTDMVTAIATPIDNSDMI--VTASRDKSIIVWHLTKE----EKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLC 699
            +G ++ H   VT++A P      I  V+ SRD + I W    +    +  YG+   RL GH+ FV  V L+    +AL+ SWD  +R+WDL  G+  R+F+ HTKDVL+VAFS D+R IVSA RD  I++WN  GEC +     D H +WVS + FSP+   P +VS SWD T+KVWN++  K   TL GH+ YV+TV VSPDGSLC
Sbjct:    4 EGHLKGHRGWVTSLACPQQAGSYIKVVSTSRDGTAISWKANPDRHSVDSDYGLPSHRLEGHTGFVSCVSLAHATDYALTASWDRSIRMWDLRNGQCQRKFLKHTKDVLAVAFSPDDRLIVSAGRDNVIRVWNVAGECMHEFLR-DGHEDWVSSICFSPSLEHPIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLC 209          
The following BLAST results are available for this feature:
BLAST of FC920456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 338
Match NameE-valueIdentityDescription
GBLP_HYDAT6.135e-7866.67Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_DICDI2.113e-7062.19Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_CAEEL2.760e-7062.56Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_SCHPO1.789e-6958.17Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_TRYBR5.053e-5652.17Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_TRYBB5.053e-5652.17Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEIMA5.065e-4845.89Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_YEAST6.615e-4845.45Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEIIN1.925e-4745.89Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEICH1.925e-4745.89Guanine nucleotide-binding protein subunit beta-li... [more]

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Properties
Property NameValue
Genbank descriptionC32008F05EF RVDevelop1 Citrus clementina cDNA clone C32008F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920456 ID=FC920456; Name=FC920456; organism=Citrus clementina; type=EST; length=699bp
GCTAGCTCGCCTCTACAAACCCTAACAGCAGGGGGGAAAAAAAAAAATAC
CGAAAGTACATTTGCTATCGGAAAAATGGCTGAAGGTCTCGTTCTCAAAG
GAACCATGCGCGCCCACACCGACATGGTAACGGCGATCGCCACCCCAATC
GACAACTCTGACATGATCGTGACGGCCTCGCGTGACAAGTCCATCATTGT
CTGGCACCTCACTAAGGAGGAAAAGACCTACGGCGTTGCGCGCCGTCGTT
TGACCGGCCACTCTCACTTCGTGCAGGACGTCGTCCTCTCCTCGGACGGC
CAGTTCGCTCTCTCCGGCTCCTGGGACGGCGAGCTCCGCCTCTGGGATTT
GGCCGAGGGCAAATCCGCCCGCAGGTTCGTCGGCCACACTAAGGACGTTC
TCTCCGTCGCCTTCTCGATCGACAACCGTCAGATTGTATCGGCCTCTCGT
GACCGTACGATCAAGTTGTGGAACACGCTCGGCGAGTGCAAGTACACGAT
TCAAGAGGGAGACGCTCACACTGAGTGGGTTTCTTGTGTTAGGTTCAGCC
CCAACACGCTTCAGCCCACTATCGTTTCCGCCTCGTGGGACCGTACGGTC
AAAGTGTGGAATTTGAGCAACTGCAAGCTTAGGGCTACTCTTGCCGGGCA
CACTGGATACGTGAACACCGTCGCAGTGTCGCCGGATGGTTCGTTGTGT
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