FC920456 | Citrus Genome Database

Overview


Name	FC920456
Unique Name	FC920456
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	699

Libraries


Library Name	Type
RVDevelop1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig2783	contig	Ccv1_Contig2783:1..684.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: LIS1A_XENLA (Lissencephaly-1 homolog A OS=Xenopus laevis GN=pafah1b1-A PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.176e-20
Identity = 64/177 (36.16%), Postives = 91/177 (51.41%), Query Frame = 1

Query:  163 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS 693
            ++VTAS D +I VW     +   G   R L GH+  VQD+     G+   S S D  ++LWD    +  R   GH  +V SVA   +   IVSASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+ S
Sbjct:  122 VMVTASEDATIKVW-----DYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESS 289

HSP 2 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 62/216 (28.70%), Postives = 100/216 (46.30%), Query Frame = 1

Query:  103 TMRAHTDMVTAIATPIDNSD-MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTI------------------VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG 690
            T++ HTD V  I+   D+S  ++ + S D +I +W     E       R + GH H V  V +  +G   +S S D  +++W++  G   + F GH + V  V  + D   I S S D+T+++W     ECK  ++E   H   V C+ ++P +   TI                  +S S D+T+K+W++S      TL GH  +V  V   P G
Sbjct:  145 TLKGHTDSVQDIS--FDHSGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE---HEHVVECISWAPESSYSTISDATGSETKKSGKPGPFLLSGSRDKTIKMWDISIGMCLMTLVGHDNWVRGVQFHPGG 350

HSP 3 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 60/211 (28.44%), Postives = 101/211 (47.87%), Query Frame = 1

Query:  103 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQ--------------------IVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTV 672
            TM  H   V+++A  + N D IV+ASRDK+I +W     E   G   +  TGH  +V+ V  + DG    S S D  +R+W +A  +       H   V  ++++ ++                      ++S SRD+TIK+W+ ++G C  T+     H  WV  V+F P      I+S + D+T+++W+  N +   TL  H  +V ++
Sbjct:  187 TMHGHDHNVSSVAI-MPNGDHIVSASRDKTIKMW-----EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISDATGSETKKSGKPGPFLLSGSRDKTIKMWDISIGMCLMTLV---GHDNWVRGVQFHPGG--KFILSCADDKTIRIWDYKNKRCMKTLNAHEHFVTSL 386

HSP 4 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 51/150 (34.00%), Postives = 71/150 (47.33%), Query Frame = 1

Query:  250 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 696
            L+GH   V  V+        ++ S D  +++WD   G   R   GHT  V  ++F    + + S S D TIKLW+  G EC  T+     H   VS V   PN     IVSAS D+T+K+W +       T  GH  +V  V  + DG+L
Sbjct:  104 LSGHRSPVTRVIFHPVFSVMVTASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH---GHDHNVSSVAIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 248

HSP 5 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 54/207 (26.09%), Postives = 96/207 (46.38%), Query Frame = 1

Query:   52 ESTFAIGKMAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD--------------------GQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 609
            + T  + ++  G  +K T   H + V  +  P  +  +I + S D+++ VW +  +E      +  L  H H V+ +  + +                    G F LSGS D  +++WD++ G      VGH   V  V F    + I+S + D+TI++W+   + C  T+   +AH  +V+ + F  +   P +V+ S D+TVKVW
Sbjct:  213 DKTIKMWEVQTGYCVK-TFTGHREWVRMVR-PNQDGTLIASCSNDQTVRVWVVATKE-----CKAELREHEHVVECISWAPESSYSTISDATGSETKKSGKPGPFLLSGSRDKTIKMWDISIGMCLMTLVGHDNWVRGVQFHPGGKFILSCADDKTIRIWDYKNKRCMKTL---NAHEHFVTSLDF--HKTAPYVVTGSVDQTVKVW 407

[Close]

BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: LIS1_RAT (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Rattus norvegicus GN=Pafah1b1 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20
Identity = 63/177 (35.59%), Postives = 91/177 (51.41%), Query Frame = 1

Query:  163 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS 693
            ++V+AS D +I VW     +   G   R L GH+  VQD+     G+   S S D  ++LWD    +  R   GH  +V SVA   +   IVSASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+ S
Sbjct:  122 VMVSASEDATIKVW-----DYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESS 289

HSP 2 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 60/216 (27.78%), Postives = 99/216 (45.83%), Query Frame = 1

Query:  103 TMRAHTDMVTAIATPIDNSD-MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQ------------------PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG 690
            T++ HTD V  I+   D+S  ++ + S D +I +W     E       R + GH H V  V +  +G   +S S D  +++W++  G   + F GH + V  V  + D   I S S D+T+++W     ECK  ++E   H   V C+ ++P +                    P ++S S D+T+K+W++S      TL GH  +V  V     G
Sbjct:  145 TLKGHTDSVQDIS--FDHSGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE---HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 350

HSP 3 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 52/150 (34.67%), Postives = 71/150 (47.33%), Query Frame = 1

Query:  250 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 696
            L+GH   V  V+        +S S D  +++WD   G   R   GHT  V  ++F    + + S S D TIKLW+  G EC  T+     H   VS V   PN     IVSAS D+T+K+W +       T  GH  +V  V  + DG+L
Sbjct:  104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH---GHDHNVSSVAIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 248

HSP 4 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 65/211 (30.81%), Postives = 98/211 (46.45%), Query Frame = 1

Query:  103 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLA--EGKSARRFVGHTKDVLSVAFSIDNRQI------------------VSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTV 672
            TM  H   V+++A  + N D IV+ASRDK+I +W     E   G   +  TGH  +V+ V  + DG    S S D  +R+W +A  E K+  R   H  + +S A       I                  +S SRD+TIK+W+ + G C  T+     H  WV  V F        I+S + D+T++VW+  N +   TL  H  +V ++
Sbjct:  187 TMHGHDHNVSSVAI-MPNGDHIVSASRDKTIKMW-----EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386

HSP 5 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 53/207 (25.60%), Postives = 96/207 (46.38%), Query Frame = 1

Query:   52 ESTFAIGKMAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD--------------------GQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 609
            + T  + ++  G  +K T   H + V  +  P  +  +I + S D+++ VW +  +E      +  L  H H V+ +  + +                    G F LSGS D  +++WD++ G      VGH   V  V F    + I+S + D+T+++W+   + C  T+   +AH  +V+ + F  +   P +V+ S D+TVKVW
Sbjct:  213 DKTIKMWEVQTGYCVK-TFTGHREWVRMVR-PNQDGTLIASCSNDQTVRVWVVATKE-----CKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL---NAHEHFVTSLDF--HKTAPYVVTGSVDQTVKVW 407

[Close]

BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: LIS1_PANTR (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pan troglodytes GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20
Identity = 63/177 (35.59%), Postives = 91/177 (51.41%), Query Frame = 1

Query:  163 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS 693
            ++V+AS D +I VW     +   G   R L GH+  VQD+     G+   S S D  ++LWD    +  R   GH  +V SVA   +   IVSASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+ S
Sbjct:  122 VMVSASEDATIKVW-----DYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESS 289

HSP 2 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 60/216 (27.78%), Postives = 99/216 (45.83%), Query Frame = 1

Query:  103 TMRAHTDMVTAIATPIDNSD-MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQ------------------PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG 690
            T++ HTD V  I+   D+S  ++ + S D +I +W     E       R + GH H V  V +  +G   +S S D  +++W++  G   + F GH + V  V  + D   I S S D+T+++W     ECK  ++E   H   V C+ ++P +                    P ++S S D+T+K+W++S      TL GH  +V  V     G
Sbjct:  145 TLKGHTDSVQDIS--FDHSGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE---HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 350

HSP 3 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 52/150 (34.67%), Postives = 71/150 (47.33%), Query Frame = 1

Query:  250 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 696
            L+GH   V  V+        +S S D  +++WD   G   R   GHT  V  ++F    + + S S D TIKLW+  G EC  T+     H   VS V   PN     IVSAS D+T+K+W +       T  GH  +V  V  + DG+L
Sbjct:  104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH---GHDHNVSSVAIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 248

HSP 4 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 65/211 (30.81%), Postives = 98/211 (46.45%), Query Frame = 1

Query:  103 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLA--EGKSARRFVGHTKDVLSVAFSIDNRQI------------------VSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTV 672
            TM  H   V+++A  + N D IV+ASRDK+I +W     E   G   +  TGH  +V+ V  + DG    S S D  +R+W +A  E K+  R   H  + +S A       I                  +S SRD+TIK+W+ + G C  T+     H  WV  V F        I+S + D+T++VW+  N +   TL  H  +V ++
Sbjct:  187 TMHGHDHNVSSVAI-MPNGDHIVSASRDKTIKMW-----EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386

HSP 5 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 52/207 (25.12%), Postives = 95/207 (45.89%), Query Frame = 1

Query:   52 ESTFAIGKMAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD--------------------GQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 609
            + T  + ++  G  +K T   H + V  +  P  +  +I + S D+++ VW +  +E      +  L  H H V+ +  + +                    G F LSGS D  +++WD++ G      VGH   V  V F    + I+S + D+T+++W+   + C  T+   +AH  +V+ + F  +   P +V+   D+TVKVW
Sbjct:  213 DKTIKMWEVQTGYCVK-TFTGHREWVRMVR-PNQDGTLIASCSNDQTVRVWVVATKE-----CKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL---NAHEHFVTSLDF--HKTAPYVVTGFVDQTVKVW 407

[Close]

BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: LIS1_MOUSE (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Mus musculus GN=Pafah1b1 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20
Identity = 63/177 (35.59%), Postives = 91/177 (51.41%), Query Frame = 1

Query:  163 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS 693
            ++V+AS D +I VW     +   G   R L GH+  VQD+     G+   S S D  ++LWD    +  R   GH  +V SVA   +   IVSASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+ S
Sbjct:  122 VMVSASEDATIKVW-----DYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESS 289

HSP 2 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 60/216 (27.78%), Postives = 99/216 (45.83%), Query Frame = 1

Query:  103 TMRAHTDMVTAIATPIDNSD-MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQ------------------PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG 690
            T++ HTD V  I+   D+S  ++ + S D +I +W     E       R + GH H V  V +  +G   +S S D  +++W++  G   + F GH + V  V  + D   I S S D+T+++W     ECK  ++E   H   V C+ ++P +                    P ++S S D+T+K+W++S      TL GH  +V  V     G
Sbjct:  145 TLKGHTDSVQDIS--FDHSGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE---HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 350

HSP 3 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 52/150 (34.67%), Postives = 71/150 (47.33%), Query Frame = 1

Query:  250 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 696
            L+GH   V  V+        +S S D  +++WD   G   R   GHT  V  ++F    + + S S D TIKLW+  G EC  T+     H   VS V   PN     IVSAS D+T+K+W +       T  GH  +V  V  + DG+L
Sbjct:  104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH---GHDHNVSSVAIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 248

HSP 4 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 65/211 (30.81%), Postives = 98/211 (46.45%), Query Frame = 1

Query:  103 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLA--EGKSARRFVGHTKDVLSVAFSIDNRQI------------------VSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTV 672
            TM  H   V+++A  + N D IV+ASRDK+I +W     E   G   +  TGH  +V+ V  + DG    S S D  +R+W +A  E K+  R   H  + +S A       I                  +S SRD+TIK+W+ + G C  T+     H  WV  V F        I+S + D+T++VW+  N +   TL  H  +V ++
Sbjct:  187 TMHGHDHNVSSVAI-MPNGDHIVSASRDKTIKMW-----EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386

HSP 5 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 53/207 (25.60%), Postives = 96/207 (46.38%), Query Frame = 1

Query:   52 ESTFAIGKMAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD--------------------GQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 609
            + T  + ++  G  +K T   H + V  +  P  +  +I + S D+++ VW +  +E      +  L  H H V+ +  + +                    G F LSGS D  +++WD++ G      VGH   V  V F    + I+S + D+T+++W+   + C  T+   +AH  +V+ + F  +   P +V+ S D+TVKVW
Sbjct:  213 DKTIKMWEVQTGYCVK-TFTGHREWVRMVR-PNQDGTLIASCSNDQTVRVWVVATKE-----CKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL---NAHEHFVTSLDF--HKTAPYVVTGSVDQTVKVW 407

[Close]

BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: LIS1_HUMAN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo sapiens GN=PAFAH1B1 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20
Identity = 63/177 (35.59%), Postives = 91/177 (51.41%), Query Frame = 1

Query:  163 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS 693
            ++V+AS D +I VW     +   G   R L GH+  VQD+     G+   S S D  ++LWD    +  R   GH  +V SVA   +   IVSASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+ S
Sbjct:  122 VMVSASEDATIKVW-----DYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESS 289

HSP 2 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 60/216 (27.78%), Postives = 99/216 (45.83%), Query Frame = 1

Query:  103 TMRAHTDMVTAIATPIDNSD-MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQ------------------PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG 690
            T++ HTD V  I+   D+S  ++ + S D +I +W     E       R + GH H V  V +  +G   +S S D  +++W++  G   + F GH + V  V  + D   I S S D+T+++W     ECK  ++E   H   V C+ ++P +                    P ++S S D+T+K+W++S      TL GH  +V  V     G
Sbjct:  145 TLKGHTDSVQDIS--FDHSGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE---HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 350

HSP 3 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 52/150 (34.67%), Postives = 71/150 (47.33%), Query Frame = 1

Query:  250 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 696
            L+GH   V  V+        +S S D  +++WD   G   R   GHT  V  ++F    + + S S D TIKLW+  G EC  T+     H   VS V   PN     IVSAS D+T+K+W +       T  GH  +V  V  + DG+L
Sbjct:  104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH---GHDHNVSSVAIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 248

HSP 4 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 65/211 (30.81%), Postives = 98/211 (46.45%), Query Frame = 1

Query:  103 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLA--EGKSARRFVGHTKDVLSVAFSIDNRQI------------------VSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTV 672
            TM  H   V+++A  + N D IV+ASRDK+I +W     E   G   +  TGH  +V+ V  + DG    S S D  +R+W +A  E K+  R   H  + +S A       I                  +S SRD+TIK+W+ + G C  T+     H  WV  V F        I+S + D+T++VW+  N +   TL  H  +V ++
Sbjct:  187 TMHGHDHNVSSVAI-MPNGDHIVSASRDKTIKMW-----EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386

HSP 5 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 53/207 (25.60%), Postives = 96/207 (46.38%), Query Frame = 1

Query:   52 ESTFAIGKMAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD--------------------GQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 609
            + T  + ++  G  +K T   H + V  +  P  +  +I + S D+++ VW +  +E      +  L  H H V+ +  + +                    G F LSGS D  +++WD++ G      VGH   V  V F    + I+S + D+T+++W+   + C  T+   +AH  +V+ + F  +   P +V+ S D+TVKVW
Sbjct:  213 DKTIKMWEVQTGYCVK-TFTGHREWVRMVR-PNQDGTLIASCSNDQTVRVWVVATKE-----CKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL---NAHEHFVTSLDF--HKTAPYVVTGSVDQTVKVW 407

[Close]

BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: LIS1_PONAB (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pongo abelii GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 62/177 (35.03%), Postives = 91/177 (51.41%), Query Frame = 1

Query:  163 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS 693
            ++V+AS D +I VW     +   G   R L GH+  +QD+     G+   S S D  ++LWD    +  R   GH  +V SVA   +   IVSASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+ S
Sbjct:  122 VMVSASEDATIKVW-----DYETGDFERTLKGHTDSIQDIPFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESS 289

HSP 2 Score: 88.5817 bits (218), Expect = 3.540e-17
Identity = 60/216 (27.78%), Postives = 99/216 (45.83%), Query Frame = 1

Query:  103 TMRAHTDMVTAIATPIDNSD-MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQ------------------PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG 690
            T++ HTD +  I  P D+S  ++ + S D +I +W     E       R + GH H V  V +  +G   +S S D  +++W++  G   + F GH + V  V  + D   I S S D+T+++W     ECK  ++E   H   V C+ ++P +                    P ++S S D+T+K+W++S      TL GH  +V  V     G
Sbjct:  145 TLKGHTDSIQDI--PFDHSGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE---HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 350

HSP 3 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 51/150 (34.00%), Postives = 70/150 (46.67%), Query Frame = 1

Query:  250 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 696
            L+GH   V  V+        +S S D  +++WD   G   R   GHT  +  + F    + + S S D TIKLW+  G EC  T+     H   VS V   PN     IVSAS D+T+K+W +       T  GH  +V  V  + DG+L
Sbjct:  104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSIQDIPFDHSGKLLASCSADMTIKLWDFQGFECIRTMH---GHDHNVSSVAIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 248

HSP 4 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 65/211 (30.81%), Postives = 98/211 (46.45%), Query Frame = 1

Query:  103 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLA--EGKSARRFVGHTKDVLSVAFSIDNRQI------------------VSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTV 672
            TM  H   V+++A  + N D IV+ASRDK+I +W     E   G   +  TGH  +V+ V  + DG    S S D  +R+W +A  E K+  R   H  + +S A       I                  +S SRD+TIK+W+ + G C  T+     H  WV  V F        I+S + D+T++VW+  N +   TL  H  +V ++
Sbjct:  187 TMHGHDHNVSSVAI-MPNGDHIVSASRDKTIKMW-----EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386

HSP 5 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 53/207 (25.60%), Postives = 96/207 (46.38%), Query Frame = 1

Query:   52 ESTFAIGKMAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD--------------------GQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 609
            + T  + ++  G  +K T   H + V  +  P  +  +I + S D+++ VW +  +E      +  L  H H V+ +  + +                    G F LSGS D  +++WD++ G      VGH   V  V F    + I+S + D+T+++W+   + C  T+   +AH  +V+ + F  +   P +V+ S D+TVKVW
Sbjct:  213 DKTIKMWEVQTGYCVK-TFTGHREWVRMVR-PNQDGTLIASCSNDQTVRVWVVATKE-----CKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL---NAHEHFVTSLDF--HKTAPYVVTGSVDQTVKVW 407

[Close]

BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: LIS1_CHICK (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Gallus gallus GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 63/177 (35.59%), Postives = 91/177 (51.41%), Query Frame = 1

Query:  163 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS 693
            ++V+AS D +I VW     +   G   R L GH+  VQD+     G+   S S D  ++LWD    +  R   GH  +V SVA   +   IVSASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+ S
Sbjct:  122 VMVSASEDATIKVW-----DYETGDFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESS 289

HSP 2 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 59/215 (27.44%), Postives = 96/215 (44.65%), Query Frame = 1

Query:  103 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTI------------------VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG 690
            T++ HTD V  I+       ++ + S D +I +W     E       R + GH H V  V +  +G   +S S D  +++W++  G   + F GH + V  V  + D   I S S D+T+++W     ECK  ++E   H   V C+ ++P +   TI                  +S S D+T+K+W++S      TL GH  +V  V     G
Sbjct:  145 TLKGHTDSVQDISFD-HTGKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE---HEHVVECISWAPESSYSTISEATGSETKKSGKPGPFLLSGSRDKTIKMWDISTGMCLMTLVGHDNWVRGVLFHSGG 350

HSP 3 Score: 78.9518 bits (193), Expect = 2.805e-14
Identity = 52/150 (34.67%), Postives = 71/150 (47.33%), Query Frame = 1

Query:  250 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 696
            L+GH   V  V+        +S S D  +++WD   G   R   GHT  V  ++F    + + S S D TIKLW+  G EC  T+     H   VS V   PN     IVSAS D+T+K+W +       T  GH  +V  V  + DG+L
Sbjct:  104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMH---GHDHNVSSVAIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 248

HSP 4 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 60/211 (28.44%), Postives = 98/211 (46.45%), Query Frame = 1

Query:  103 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQ--------------------IVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTV 672
            TM  H   V+++A  + N D IV+ASRDK+I +W     E   G   +  TGH  +V+ V  + DG    S S D  +R+W +A  +       H   V  ++++ ++                      ++S SRD+TIK+W+ + G C  T+     H  WV  V F        I+S + D+T++VW+  N +   TL  H  +V ++
Sbjct:  187 TMHGHDHNVSSVAI-MPNGDHIVSASRDKTIKMW-----EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISEATGSETKKSGKPGPFLLSGSRDKTIKMWDISTGMCLMTLV---GHDNWVRGVLFHSGG--KFILSCADDKTLRVWDFKNKRCMKTLNAHEHFVTSL 386

HSP 5 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 53/207 (25.60%), Postives = 96/207 (46.38%), Query Frame = 1

Query:   52 ESTFAIGKMAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD--------------------GQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 609
            + T  + ++  G  +K T   H + V  +  P  +  +I + S D+++ VW +  +E      +  L  H H V+ +  + +                    G F LSGS D  +++WD++ G      VGH   V  V F    + I+S + D+T+++W+   + C  T+   +AH  +V+ + F  +   P +V+ S D+TVKVW
Sbjct:  213 DKTIKMWEVQTGYCVK-TFTGHREWVRMVR-PNQDGTLIASCSNDQTVRVWVVATKE-----CKAELREHEHVVECISWAPESSYSTISEATGSETKKSGKPGPFLLSGSRDKTIKMWDISTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDFKNKRCMKTL---NAHEHFVTSLDF--HKTAPYVVTGSVDQTVKVW 407

[Close]

BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: WD51B_PONAB (WD repeat-containing protein 51B OS=Pongo abelii GN=WDR51B PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.836e-20
Identity = 63/205 (30.73%), Postives = 98/205 (47.80%), Query Frame = 1

Query:   82 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS 693
            E  VL+   + H   +T++     N   + TAS D  +++W+     + Y     R  GH   V  V  S  G    S S D  +RLW   +      F  HT  V SV FS D + + +AS D++IK+W+   +   Y++     HT WV C +FSP+     IVS S D+T+K+W+ +N +     +   G+ N V  +P G+
Sbjct:    6 EDPVLERYFKGHKAAITSLDLS-PNGKQLATASWDTFLMLWNFKPHARAY-----RYVGHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYR---HTHWVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGT 199

HSP 2 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 55/154 (35.71%), Postives = 79/154 (51.30%), Query Frame = 1

Query:  235 VARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 696
            V  R   GH   +  + LS +G+   + SWD  L LW+      A R+VGH   V SV FS     + SASRDRT++LW  + + +    E  AHT  V  V FS +     + +AS D+++KVW++   +   +L  HT +V     SPDG L
Sbjct:    9 VLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASASRDRTVRLW--IPDKRGKFSEFKAHTAPVRSVDFSAD--GQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRL 158

HSP 3 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 59/190 (31.05%), Postives = 94/190 (49.47%), Query Frame = 1

Query:  115 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP 684
            H D+VT++     + +++ +ASRD+++ +W   K  K           H+  V+ V  S+DGQF  + S D  +++W +   +       HT  V    FS D R IVS S D+TIK+W+T    K  +        + + V F+P+     I SA  D+TVKVW++   KL      H+G VN ++  P
Sbjct:   59 HKDVVTSVQFS-PHGNLLASASRDRTVRLWIPDKRGKF-----SEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTN--KQCVNNFSDSVGFANFVDFNPS--GTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHP 238

[Close]

BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: WD51B_HUMAN (WD repeat-containing protein 51B OS=Homo sapiens GN=WDR51B PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.836e-20
Identity = 63/205 (30.73%), Postives = 98/205 (47.80%), Query Frame = 1

Query:   82 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS 693
            E  VL+   + H   +T++     N   + TAS D  +++W+     + Y     R  GH   V  V  S  G    S S D  +RLW   +      F  HT  V SV FS D + + +AS D++IK+W+   +   Y++     HT WV C +FSP+     IVS S D+T+K+W+ +N +     +   G+ N V  +P G+
Sbjct:    6 EDPVLERYFKGHKAAITSLDLS-PNGKQLATASWDTFLMLWNFKPHARAY-----RYVGHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYR---HTHWVRCAKFSPD--GRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGT 199

HSP 2 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 60/193 (31.09%), Postives = 96/193 (49.74%), Query Frame = 1

Query:  115 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS 693
            H D+VT++     + +++ +ASRD+++ +W   K  K           H+  V+ V  S+DGQF  + S D  +++W +   +       HT  V    FS D R IVS S D+TIK+W+T    K  +        + + V F+P+     I SA  D+TVKVW++   KL      H+G VN ++  P G+
Sbjct:   59 HKDVVTSVQFS-PHGNLLASASRDRTVRLWIPDKRGKF-----SEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTN--KQCVNNFSDSVGFANFVDFNPS--GTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGN 241

HSP 3 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 55/154 (35.71%), Postives = 79/154 (51.30%), Query Frame = 1

Query:  235 VARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 696
            V  R   GH   +  + LS +G+   + SWD  L LW+      A R+VGH   V SV FS     + SASRDRT++LW  + + +    E  AHT  V  V FS +     + +AS D+++KVW++   +   +L  HT +V     SPDG L
Sbjct:    9 VLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASASRDRTVRLW--IPDKRGKFSEFKAHTAPVRSVDFSAD--GQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRL 158

[Close]

BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: LIS1_MACFA (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Macaca fascicularis GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 5.836e-20
Identity = 62/177 (35.03%), Postives = 91/177 (51.41%), Query Frame = 1

Query:  163 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS 693
            ++V+AS D +I VW     +   G   R L GH+  VQD+     G+   S S D  ++LWD    +  R   GH  +V SVA   +   +VSASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+ S
Sbjct:  122 VMVSASEDATIKVW-----DYETGDFERTLKGHTDSVQDISFDHSGKLLTSCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHLVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESS 289

HSP 2 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 61/216 (28.24%), Postives = 100/216 (46.30%), Query Frame = 1

Query:  103 TMRAHTDMVTAIATPIDNSDMIVTA-SRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQ------------------PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG 690
            T++ HTD V  I+   D+S  ++T+ S D +I +W     E       R + GH H V  V +  +G   +S S D  +++W++  G   + F GH + V  V  + D   I S S D+T+++W     ECK  ++E   H   V C+ ++P +                    P ++S S D+T+K+W++S      TL GH  +V  V     G
Sbjct:  145 TLKGHTDSVQDIS--FDHSGKLLTSCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVAIMPNGDHLVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE---HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 350

HSP 3 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 51/150 (34.00%), Postives = 71/150 (47.33%), Query Frame = 1

Query:  250 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 696
            L+GH   V  V+        +S S D  +++WD   G   R   GHT  V  ++F    + + S S D TIKLW+  G EC  T+     H   VS V   PN     +VSAS D+T+K+W +       T  GH  +V  V  + DG+L
Sbjct:  104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLTSCSADMTIKLWDFQGFECIRTMH---GHDHNVSSVAIMPN--GDHLVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 248

HSP 4 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 64/211 (30.33%), Postives = 98/211 (46.45%), Query Frame = 1

Query:  103 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLA--EGKSARRFVGHTKDVLSVAFSIDNRQI------------------VSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTV 672
            TM  H   V+++A  + N D +V+ASRDK+I +W     E   G   +  TGH  +V+ V  + DG    S S D  +R+W +A  E K+  R   H  + +S A       I                  +S SRD+TIK+W+ + G C  T+     H  WV  V F        I+S + D+T++VW+  N +   TL  H  +V ++
Sbjct:  187 TMHGHDHNVSSVAI-MPNGDHLVSASRDKTIKMW-----EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386

HSP 5 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 53/207 (25.60%), Postives = 96/207 (46.38%), Query Frame = 1

Query:   52 ESTFAIGKMAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD--------------------GQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 609
            + T  + ++  G  +K T   H + V  +  P  +  +I + S D+++ VW +  +E      +  L  H H V+ +  + +                    G F LSGS D  +++WD++ G      VGH   V  V F    + I+S + D+T+++W+   + C  T+   +AH  +V+ + F  +   P +V+ S D+TVKVW
Sbjct:  213 DKTIKMWEVQTGYCVK-TFTGHREWVRMVR-PNQDGTLIASCSNDQTVRVWVVATKE-----CKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL---NAHEHFVTSLDF--HKTAPYVVTGSVDQTVKVW 407

The following BLAST results are available for this feature:

BLAST of FC920456 vs. ExPASy Swiss-Prot

BLAST of FC920456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 338


Match Name	E-value	Identity	Description
LIS1A_XENLA	1.176e-20	36.16	Lissencephaly-1 homolog A OS=Xenopus laevis GN=paf...	[more]
LIS1_RAT	3.421e-20	35.59	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_PANTR	3.421e-20	35.59	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_MOUSE	3.421e-20	35.59	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_HUMAN	3.421e-20	35.59	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_PONAB	4.468e-20	35.03	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_CHICK	4.468e-20	35.59	Platelet-activating factor acetylhydrolase IB subu...	[more]
WD51B_PONAB	5.836e-20	30.73	WD repeat-containing protein 51B OS=Pongo abelii G...	[more]
WD51B_HUMAN	5.836e-20	30.73	WD repeat-containing protein 51B OS=Homo sapiens G...	[more]
LIS1_MACFA	5.836e-20	35.03	Platelet-activating factor acetylhydrolase IB subu...	[more]

Pages

Properties


Property Name	Value
Genbank description	C32008F05EF RVDevelop1 Citrus clementina cDNA clone C32008F05, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC920456 ID=FC920456; Name=FC920456; organism=Citrus clementina; type=EST; length=699bp
GCTAGCTCGCCTCTACAAACCCTAACAGCAGGGGGGAAAAAAAAAAATAC
CGAAAGTACATTTGCTATCGGAAAAATGGCTGAAGGTCTCGTTCTCAAAG
GAACCATGCGCGCCCACACCGACATGGTAACGGCGATCGCCACCCCAATC
GACAACTCTGACATGATCGTGACGGCCTCGCGTGACAAGTCCATCATTGT
CTGGCACCTCACTAAGGAGGAAAAGACCTACGGCGTTGCGCGCCGTCGTT
TGACCGGCCACTCTCACTTCGTGCAGGACGTCGTCCTCTCCTCGGACGGC
CAGTTCGCTCTCTCCGGCTCCTGGGACGGCGAGCTCCGCCTCTGGGATTT
GGCCGAGGGCAAATCCGCCCGCAGGTTCGTCGGCCACACTAAGGACGTTC
TCTCCGTCGCCTTCTCGATCGACAACCGTCAGATTGTATCGGCCTCTCGT
GACCGTACGATCAAGTTGTGGAACACGCTCGGCGAGTGCAAGTACACGAT
TCAAGAGGGAGACGCTCACACTGAGTGGGTTTCTTGTGTTAGGTTCAGCC
CCAACACGCTTCAGCCCACTATCGTTTCCGCCTCGTGGGACCGTACGGTC
AAAGTGTGGAATTTGAGCAACTGCAAGCTTAGGGCTACTCTTGCCGGGCA
CACTGGATACGTGAACACCGTCGCAGTGTCGCCGGATGGTTCGTTGTGT