FC920456
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: UTP13_SCHPO (Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe GN=utp13 PE=2 SV=3) HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16 Identity = 62/201 (30.85%), Postives = 105/201 (52.24%), Query Frame = 1 Query: 115 HTDMVTAIAT-PIDNSD---MIVTASRDKSIIVWHLTKEEKTYGVARRR---LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 696 HT VTA+A P+D + + ++S+D+++ ++L + + R + H V + +S DG+ S S D ++LWD + G+ GH + V + +F+ +RQ+ S S DRTI++WN + + +Q + HT + + + Q +VSA+ D VKVW+LS+ + ATL H V +A DGSL Sbjct: 409 HTASVTAVALGPLDVNGYPTFLASSSQDRTLKRFNLGSQLNKSDFSNRAVWTIKAHDRDVNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVLRGHRRGVWACSFNPFSRQLASGSGDRTIRIWNV--DTQQCVQTLEGHTGAILKLIYISQGTQ--VVSAAADGLVKVWSLSSGECVATLDNHEDRVWALASRFDGSL 605
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: SCON2_NEUCR (Sulfur controller 2 OS=Neurospora crassa GN=scon-2 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16 Identity = 55/193 (28.50%), Postives = 98/193 (50.78%), Query Frame = 1 Query: 106 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP 684 ++ H + VT + + +++ T S D +I +W++ EE R L GH+ ++ L D +SGS D +++W+ G+ F HT V+SV F D + S S D+T+K+++ + Y ++ H++WV+ + T+ SAS D T+K+W+L ++ T GH G+V V + P Sbjct: 290 LKGHENGVTCLQL---DDNILATGSYDTTIKIWNIETEE-----CIRTLVGHTAGIR--ALQFDDSKLISGSLDHTIKVWNWHTGECLSTFAAHTDSVISVHF--DGHLLASGSSDKTVKIFDFNSKETYCLK---GHSDWVNSTHVDIKSR--TVFSASDDTTIKLWDLDTRQVIRTYEGHVGHVQQVLILP 465
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: PRP4_PONAB (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii GN=PRPF4 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16 Identity = 57/176 (32.39%), Postives = 82/176 (46.59%), Query Frame = 1 Query: 172 TASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 696 T D+S +W L +E+ GHS V D+ DG A +G D R+WDL G+ GH K++ + FS + I + S D T K+W+ C YTI AH V+ V+F P +++ ++D T K+W TLAGH G V + +S DG L Sbjct: 339 TTCYDRSWRLWDLEAQEEIL-----HQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTI---PAHQNLVTGVKFEP-IHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQL 505
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: PRP4_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4 PE=1 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16 Identity = 57/176 (32.39%), Postives = 82/176 (46.59%), Query Frame = 1 Query: 172 TASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 696 T D+S +W L +E+ GHS V D+ DG A +G D R+WDL G+ GH K++ + FS + I + S D T K+W+ C YTI AH V+ V+F P +++ ++D T K+W TLAGH G V + +S DG L Sbjct: 340 TTCYDRSWRLWDLEAQEEIL-----HQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTI---PAHQNLVTGVKFEP-IHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQL 506
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: PRP4_BOVIN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus GN=PRPF4 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16 Identity = 57/176 (32.39%), Postives = 82/176 (46.59%), Query Frame = 1 Query: 172 TASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 696 T D+S +W L +E+ GHS V D+ DG A +G D R+WDL G+ GH K++ + FS + I + S D T K+W+ C YTI AH V+ V+F P +++ ++D T K+W TLAGH G V + +S DG L Sbjct: 339 TTCYDRSWRLWDLEAQEEIL-----HQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTI---PAHQNLVTGVKFEP-IHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQL 505
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: MET30_YEAST (F-box protein MET30 OS=Saccharomyces cerevisiae GN=MET30 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16 Identity = 59/184 (32.07%), Postives = 97/184 (52.72%), Query Frame = 1 Query: 154 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVV-LSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLC 699 N+D+ +R +I K E + R+ + V+ L + + +GS+D + +WDL GK RR GH+ V ++ F D+R++++ S D+TI++WN + GEC T + H++ V S ++ Q IVS S D+TVKVW++ + + TL GHT +VN V + P C Sbjct: 263 NADIQTQTTRPWKVIYRERFKVESNWRKGHCRIQEFKGHMDGVLTLQFNYRLLFTGSYDSTIGIWDLFTGKLIRRLSGHSDGVKTLYF--DDRKLITGSLDKTIRVWNYITGECISTYR---GHSDSV----LSVDSYQKVIVSGSADKTVKVWHVES-RTCYTLRGHTEWVNCVKLHPKSFSC 436
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: YCW2_YEAST (WD repeat-containing protein YCR072C OS=Saccharomyces cerevisiae GN=YCR072C PE=1 SV=3) HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16 Identity = 50/153 (32.68%), Postives = 82/153 (53.59%), Query Frame = 1 Query: 151 DNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 609 ++ +M+VTAS D ++ +W+ K K R+TGH V V S DG++ +S S+D ++LWD +GK F GH V VA+S D R +VS S+D T+K+W+ + + H + V V +S + + + S D+ V++W Sbjct: 369 NSEEMMVTASDDYTMFLWNPLKSTKPIA----RMTGHQKLVNHVAFSPDGRYIVSASFDNSIKLWDGRDGKFISTFRGHVASVYQVAWSSDCRLLVSCSKDTTLKVWDV--RTRKLSVDLPGHKDEVYTVDWSVDGKR--VCSGGKDKMVRLW 513 HSP 2 Score: 82.8037 bits (203), Expect = 1.943e-15 Identity = 61/204 (29.90%), Postives = 100/204 (49.02%), Query Frame = 1 Query: 115 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKS-ARRFVGHTKDVLSVAFSI-------DNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-SNCKLRATLAGHTGYVNTVAVSPDGSL 696 H + A S +VT + D + +W + + L GH ++V V S DG+ +GS D +RLWD G+ GH+K + S+++ ++ S+S+D TIK+W+T+ C+YT+ HT VSCV++ Q + S S DRTV+VW++ S + L H +VN +++S D +L Sbjct: 142 HGSTILCSAFAPHTSSRMVTGAGDNTARIWDCDTQTPMH-----TLKGHYNWVLCVSWSPDGEVIATGSMDNTIRLWDPKSGQCLGDALRGHSKWITSLSWEPIHLVKPGSKPRLASSSKDGTIKIWDTVSRVCQYTM---SGHTNSVSCVKWGG---QGLLYSGSHDRTVRVWDINSQGRCINILKSHAHWVNHLSLSTDYAL 334
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: WDR69_RAT (WD repeat-containing protein 69 OS=Rattus norvegicus GN=Wdr69 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16 Identity = 61/231 (26.41%), Postives = 101/231 (43.72%), Query Frame = 1 Query: 7 SPLQTLTAGGKKKNTESTFAIGKMAEGLVLKGTMRAHTDMVTAIATPIDNS-DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 696 +P T+ A G T + I E + L G + I+ D S D I+T S D +++VW + K + L GH + + S D L+GS D LWD GK GH ++L F + I +AS D T +++N T EG H +S + F+P + +++ S D+T ++W++ + L GHT + + A + G++ Sbjct: 186 NPQSTVVATGSMDTTAKLWDIQSGEEVVTLTG------HLAEIISLSFDTSGDRIITGSFDHTVVVWDASTGRKVH-----TLIGHCAEISSALFSWDCSLILTGSMDKTCMLWDATSGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARVYNATTRKCITKLEG--HEGEISKISFNPQGNR--LLTGSSDKTARIWDVQTGQCLQVLEGHTDEIFSCAFNYKGNI 401 HSP 2 Score: 82.4185 bits (202), Expect = 2.537e-15 Identity = 54/198 (27.27%), Postives = 94/198 (47.47%), Query Frame = 1 Query: 103 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS 693 T R HT + ++ S ++ T S D + +W + E+ LTGH + + + G ++GS+D + +WD + G+ +GH ++ S FS D I++ S D+T LW+ T G+C T+ D SC ++ I +AS D T +V+N + K L GH G ++ ++ +P G+ Sbjct: 172 TFRGHTAEIVCLSFN-PQSTVVATGSMDTTAKLWDIQSGEEVV-----TLTGHLAEIISLSFDTSGDRIITGSFDHTVVVWDASTGRKVHTLIGHCAEISSALFSWDCSLILTGSMDKTCMLWDATSGKCVATLTGHDDEI-LDSCFDYTGK----LIATASADGTARVYNATTRKCITKLEGHEGEISKISFNPQGN 358 HSP 3 Score: 74.7146 bits (182), Expect = 5.290e-13 Identity = 56/202 (27.72%), Postives = 92/202 (45.54%), Query Frame = 1 Query: 106 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD-GQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT----EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 696 +RAH +T +A S +T S D++ VW E+ + L GH + V + ++ G +GS+D +LW GK F GHT +++ ++F+ + + + S D T KLW+ IQ G+ + S +T I++ S+D TV VW+ S + TL GH +++ S D SL Sbjct: 88 LRAHILPLTNVALNKAGS-CFITGSYDRTCKVWDTASGEELH-----TLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSAETGKCYHTFRGHTAEIVCLSFNPQSTVVATGSMDTTAKLWD--------IQSGEEVVTLTGHLAEIISLSFDTSGDRIITGSFDHTVVVWDASTGRKVHTLIGHCAEISSALFSWDCSL 275 HSP 4 Score: 74.3294 bits (181), Expect = 6.910e-13 Identity = 51/184 (27.72%), Postives = 88/184 (47.83%), Query Frame = 1 Query: 103 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH 651 T+ H ++V AIA D I T S DK+ +W + K Y R GH+ + + + +GS D +LWD+ G+ GH +++S++F +I++ S D T+ +W+ + G +T+ H +S FS + I++ S D+T +W+ ++ K ATL GH Sbjct: 129 TLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWS-AETGKCYHTFR----GHTAEIVCLSFNPQSTVVATGSMDTTAKLWDIQSGEEVVTLTGHLAEIISLSFDTSGDRIITGSFDHTVVVWDASTGRKVHTL---IGHCAEISSALFSWDC--SLILTGSMDKTCMLWDATSGKCVATLTGH 302
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: PLRG1_RAT (Pleiotropic regulator 1 OS=Rattus norvegicus GN=Plrg1 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16 Identity = 57/190 (30.00%), Postives = 87/190 (45.79%), Query Frame = 1 Query: 115 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP 684 H V IA N VT S D++I +W L G + LTGH V+ V++S+ + S D +++ WDL K R + GH V + +V+ SRD T ++W+ K ++ HT V+ VR +P I++ S D T+++W+L K R TL H V V + P Sbjct: 203 HLGWVRCIAVEPGNQ-WFVTGSADRTIKIWDLAS-----GKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDV--RTKASVHTLSGHTNAVATVRC--QAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHP 382
BLAST of FC920456 vs. ExPASy Swiss-Prot
Match: PLRG1_MOUSE (Pleiotropic regulator 1 OS=Mus musculus GN=Plrg1 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16 Identity = 57/190 (30.00%), Postives = 87/190 (45.79%), Query Frame = 1 Query: 115 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP 684 H V IA N VT S D++I +W L G + LTGH V+ V++S+ + S D +++ WDL K R + GH V + +V+ SRD T ++W+ K ++ HT V+ VR +P I++ S D T+++W+L K R TL H V V + P Sbjct: 202 HLGWVRCIAVEPGNQ-WFVTGSADRTIKIWDLAS-----GKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTLDVLVTCSRDSTARIWDV--RTKASVHTLSGHTNAVATVRC--QAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHP 381 The following BLAST results are available for this feature:
BLAST of FC920456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 338
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920456 ID=FC920456; Name=FC920456; organism=Citrus clementina; type=EST; length=699bpback to top |