FC920457

Overview
NameFC920457
Unique NameFC920457
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length510
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6036 contig Ccv1_Contig6036:93..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920457 vs. ExPASy Swiss-Prot
Match: FL3H_MATIN (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Matthiola incana GN=FHT PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.508e-15
Identity = 47/147 (31.97%), Postives = 74/147 (50.34%), Query Frame = 1
Query:   85 AEFVRPEKEQPASATYHGPAPEIPTIDLD-----DPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEY 510
            ++FVR E E+P  A Y+  + EIP I L      D  +  + R I EA   WGIFQV +HG+ + L+  +  + ++FF LP EEK  +      K   G+      + E  + W + + +  +P  + +Y  WP+ P  +  V EEY
Sbjct:   16 SKFVRDEDERPKVA-YNEFSDEIPVISLAGIDDVDGKRGEICREIVEACENWGIFQVVDHGVDTSLVADMTRLARDFFALPPEEKLRFDMSGGKKG--GFIVSSHLQGEAVQDWREIVTYFSYPVRNRDYSRWPDKPQGWAKVTEEY 159          
BLAST of FC920457 vs. ExPASy Swiss-Prot
Match: FL3H_PETHY (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Petunia hybrida GN=AN3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.450e-14
Identity = 49/150 (32.67%), Postives = 78/150 (52.00%), Query Frame = 1
Query:   76 TIPAEFVRPEKEQPASATYHGPAPEIPTIDL---DDPVQDR--LVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEY 510
            T+   F+R E E+P  A Y+  + EIP I L   DD    R  +   I +A  +WG+FQV +HG+ +++I ++    KEFF LP EEK  +      K      + LQ EV   + W + + +  +P  + +Y  WP+ P  + AV ++Y
Sbjct:   17 TLQTSFIRDEDERPKVA-YNQFSNEIPIISLEGIDDETGKRAEICDKIVKACEDWGVFQVVDHGVDAEVISQMTTFAKEFFALPPEEKLRFDMSGGKKGGFIVSSHLQGEV--VQDWREIVTYFSYPTRARDYSRWPDKPEGWIAVTQKY 163          
BLAST of FC920457 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.473e-14
Identity = 45/149 (30.20%), Postives = 71/149 (47.65%), Query Frame = 1
Query:   76 TIPAEFVRPEKEQPASATYHGPAPEIPTIDL----DDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEY 510
            T+P  +VR ++++           EIP ID+         D  V  +  A +EWG FQ+ NHGI S  + K+++  ++FF LP EEK+ + +  D  +++G+G       + K  W D  FH V P        +P  P  +R   E Y
Sbjct:   28 TVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPD--EIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMY 174          
BLAST of FC920457 vs. ExPASy Swiss-Prot
Match: FL3H_ARATH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabidopsis thaliana GN=F3H PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.473e-14
Identity = 46/147 (31.29%), Postives = 75/147 (51.02%), Query Frame = 1
Query:   85 AEFVRPEKEQPASATYHGPAPEIPTIDLD-----DPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEY 510
            ++FVR E E+P  A Y+  + EIP I L      D  +  + R I EA   WGIFQV +HG+ ++L+  +  + ++FF LP E+K  +      K   G+      + E  + W + + +  +P  + +Y  WP+ P  +  V EEY
Sbjct:   17 SKFVRDEDERPKVA-YNVFSDEIPVISLAGIDDVDGKRGEICRQIVEACENWGIFQVVDHGVDTNLVADMTRLARDFFALPPEDKLRFDMSGGKKG--GFIVSSHLQGEAVQDWREIVTYFSYPVRNRDYSRWPDKPEGWVKVTEEY 160          
BLAST of FC920457 vs. ExPASy Swiss-Prot
Match: FL3H_CALCH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Callistephus chinensis GN=FHT PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.230e-14
Identity = 45/144 (31.25%), Postives = 74/144 (51.39%), Query Frame = 1
Query:   88 EFVRPEKEQPASATYHGPAPEIPTIDL---DDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEY 510
            +FVR E E+P    Y+  + EIP I L   D   +  +   I +A  +WGIFQV +HG+ + L+  +  + ++FF LP +EK  +      K   G+      + E  + W + + +  +P  + +Y  WP+ P  +RAV EEY
Sbjct:   18 KFVRDEDERP-KVPYNTFSNEIPVISLAGIDGCRRAEICDEIVKACEDWGIFQVVDHGVDTKLLSDMTGLARDFFHLPTQEKLRFDMTGGKKG--GFIVSSHLQGEAVQDWREIVTYFSYPIKARDYSRWPDKPNEWRAVTEEY 158          
BLAST of FC920457 vs. ExPASy Swiss-Prot
Match: FL3H_HORVU (Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.603e-13
Identity = 45/147 (30.61%), Postives = 71/147 (48.30%), Query Frame = 1
Query:   76 TIPAEFVRPEKEQPASA--TYHGPAPEIPTIDLDDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEY 510
            T+   FVR E E+P  A   +    P I    +D   + ++   +A A  +WGIFQV +HG+ +DLI  +  + +EFF LP E+K  Y      K   G+      + E  + W + + +  +P  + +Y  WP  P  + AV E Y
Sbjct:   19 TLRPSFVRDEDERPKVAHDRFSDAVPLISLHGIDGARRAQIRDRVAAACEDWGIFQVIDHGVDADLIADMTRLAREFFALPAEDKLRYDMSGGKKG--GFIVSSHLQGEAVQDWREIVTYFSYPVKARDYGRWPEKPAGWCAVVERY 163          
BLAST of FC920457 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.948e-12
Identity = 49/146 (33.56%), Postives = 68/146 (46.58%), Query Frame = 1
Query:   97 RPEKEQPASATYHGPAPEIPTIDLDDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQ-GYGTKLQKEVEGKK-------SWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEY 510
            R EK+ P          ++P IDL       LV+ I +A +++G+FQV NHG P +L+ +   V KEFF LP EEKE +    +A   +     K +  VEG++        W D L H   P        WP  P  YR V  +Y
Sbjct:   24 RAEKDVPVGN-------DVPIIDLQQH-HHLLVQQITKACQDFGLFQVINHGFPEELMLETMEVCKEFFALPAEEKEKFKPKGEAAKFELPLEQKAKLYVEGEQLSNEEFLYWKDTLAHGCHPLDQDLVNSWPEKPAKYREVVAKY 161          
The following BLAST results are available for this feature:
BLAST of FC920457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
FL3H_MATIN6.508e-1531.97Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]
FL3H_PETHY1.450e-1432.67Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]
SRG1_ARATH2.473e-1430.20Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
FL3H_ARATH2.473e-1431.29Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabido... [more]
FL3H_CALCH3.230e-1431.25Naringenin,2-oxoglutarate 3-dioxygenase OS=Callist... [more]
FL3H_HORVU1.603e-1330.61Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum... [more]
HY6H_HYONI3.948e-1233.56Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]

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Properties
Property NameValue
Genbank descriptionC32008F06EF RVDevelop1 Citrus clementina cDNA clone C32008F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920457 ID=FC920457; Name=FC920457; organism=Citrus clementina; type=EST; length=510bp
GGGTTTTGCTGGAAAATAAAATTAATGGAGGTGGAGAGGGTCCAAGCCAT
TGCTTCCTTATCCCATTCAAATGGCACAATTCCAGCAGAGTTCGTAAGAC
CCGAAAAAGAACAGCCAGCAAGCGCAACGTACCACGGCCCCGCTCCTGAA
ATCCCCACGATCGATCTCGACGACCCCGTTCAAGACAGACTCGTACGTTC
CATCGCGGAAGCCAGCCGGGAGTGGGGGATTTTCCAGGTTACAAACCACG
GGATACCTAGTGACCTCATCGGTAAACTGCAAGCCGTCGGCAAAGAATTT
TTTGAGCTCCCTCAGGAAGAGAAAGAAGTGTATTCTCGTCCGGCTGATGC
AAAAGACGTGCAAGGATACGGCACAAAGTTACAGAAAGAAGTCGAAGGAA
AGAAATCTTGGGTTGATCATCTCTTCCACAGGGTTTGGCCTCCGTCTTCT
ATCAACTACCGCTTTTGGCCCAACAACCCTCCTTCTTACCGAGCGGTGAA
TGAGGAGTAT
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