FC920459

Overview
NameFC920459
Unique NameFC920459
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SHEB5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=gpmI PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.582e-33
Identity = 81/224 (36.16%), Postives = 128/224 (57.14%), Query Frame = 2
Query:   32 KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ++ +AV A++   E+ N ND+++    I D +G+ V  + DGDA++  NFRADR   + ++    DFD F+R   PK+ +  + +Y G++K P  Y   P E +  T GE L   G      SET K+ HVTFF+NG +   F+   E+ + I S    T+++QP+M + E+ ++   AI S ++    C  PN DMVGHTG+ +A V AC+A D  +  ++DA
Sbjct:  215 QYDNAVTALEAAYER-NENDEFVSSSAITDADGQ-VATLQDGDALIFMNFRADRARQITRSFINPDFDGFERAVVPKMHFVTLTEYAGDIKAPIAY---PSENLVNTLGEVLQKQGRTQLRISETEKYAHVTFFFNGGKEEPFEG--EDRILINSPKVATYDLQPEMSSAELTDKLVAAIESTKYDVIICNYPNGDMVGHTGNFDAAVKACEAVDACIGRVVDA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SHESR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain MR-7) GN=gpmI PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.066e-33
Identity = 82/224 (36.61%), Postives = 127/224 (56.70%), Query Frame = 2
Query:   32 KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ++ +AV A++   E+ N ND+++    I D  GK V  + DGDA++  NFRADR   + ++    DFD F+R   PK+ +  + +Y  ++K P  Y   P E +  T GE L + G      SET K+ HVTFF+NG +   F  N E+ + I S    T+++QP+M + E+ ++   AI S ++    C  PN DMVGHTG+ +A V AC+A D  +  ++DA
Sbjct:  215 QYDNAVTALEAAYER-NENDEFVSSSAITDSEGK-VASLNDGDALIFMNFRADRARQITRSFINADFDGFERAVTPKVNFVTLTEYAADIKAPIAY---PSENLVNTLGEVLQNRGRTQLRISETEKYAHVTFFFNGGKEEPF--NGEDRILINSPKVATYDLQPEMSSTELTDKLVAAIESAQYDVIICNYPNGDMVGHTGNFDAAVKACEAVDACIGRVVDA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SHESM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain MR-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.066e-33
Identity = 82/224 (36.61%), Postives = 127/224 (56.70%), Query Frame = 2
Query:   32 KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ++ +AV A++   E+ N ND+++    I D  GK V  + DGDA++  NFRADR   + ++    DFD F+R   PK+ +  + +Y  ++K P  Y   P E +  T GE L + G      SET K+ HVTFF+NG +   F  N E+ + I S    T+++QP+M + E+ ++   AI S ++    C  PN DMVGHTG+ +A V AC+A D  +  ++DA
Sbjct:  215 QYDNAVTALEAAYER-NENDEFVSSSAITDSEGK-VASLNDGDALIFMNFRADRARQITRSFINADFDGFERAVTPKVNFVTLTEYAADIKAPIAY---PSENLVNTLGEVLQNRGRTQLRISETEKYAHVTFFFNGGKEEPF--NGEDRILINSPKVATYDLQPEMSSTELTDKLVAAIESAQYDVIICNYPNGDMVGHTGNFDAAVKACEAVDACIGRVVDA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SHESA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain ANA-3) GN=gpmI PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.066e-33
Identity = 82/224 (36.61%), Postives = 127/224 (56.70%), Query Frame = 2
Query:   32 KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ++ +AV A++   E+ N ND+++    I D  GK V  + DGDA++  NFRADR   + ++    DFD F+R   PK+ +  + +Y  ++K P  Y   P E +  T GE L + G      SET K+ HVTFF+NG +   F  N E+ + I S    T+++QP+M + E+ ++   AI S ++    C  PN DMVGHTG+ +A V AC+A D  +  ++DA
Sbjct:  215 QYDNAVTALEAAYER-NENDEFVSSSAITDSEGK-VASLNDGDALIFMNFRADRARQITRSFINADFDGFERAVTPKVNFVTLTEYAADIKAPIAY---PSENLVNTLGEVLQNRGRTQLRISETEKYAHVTFFFNGGKEEPF--NGEDRILINSPKVATYDLQPEMSSTELTDKLVAAIESAQYDVIICNYPNGDMVGHTGNFDAAVKACEAVDACIGRVVDA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SHEB9 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella baltica (strain OS195) GN=gpmI PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.066e-33
Identity = 81/224 (36.16%), Postives = 128/224 (57.14%), Query Frame = 2
Query:   32 KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ++ +AV A++   E+ N ND+++    I D +G+ V  + DGDA++  NFRADR   + ++    DFD F+R   PK+ +  + +Y G++K P  Y   P E +  T GE L   G      SET K+ HVTFF+NG +   F+   E+ + I S    T+++QP+M + E+ ++   AI S ++    C  PN DMVGHTG+ +A V AC+A D  +  ++DA
Sbjct:  215 QYDNAVTALEAAYER-NENDEFVSSSAITDADGQ-VATLQDGDALIFMNFRADRARQITRSFINPDFDGFERAVVPKMHFVTLTEYAGDIKAPIAY---PSENLVNTLGEVLQKQGRTQLRISETEKYAHVTFFFNGGKEEPFEG--EDRILINSPKVATYDLQPEMSSAELTDKLVAAIESTKYDVIICNYPNGDMVGHTGNFDAAVKACEAVDACIGCVVDA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_METBU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanococcoides burtonii (strain DSM 6242) GN=gpmI PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.851e-33
Identity = 78/205 (38.05%), Postives = 116/205 (56.59%), Query Frame = 2
Query:   86 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ND+++ P VIVDENG+ +G + + D V+ FNFR DR   L  A   ++FD F+R   PK+ +  M +YD +L++P  +     E+  T GE L   G++    +ET K+ HVTFF+NG      +   EE   IPS    T++++P+M A E+ E   + I S ++      L N DMVGH+G +EA V A +  D+ V  II A
Sbjct:  232 NDEFIKPTVIVDENGRPIGRMNENDTVIFFNFRPDRARQLTYAFVNDEFDNFERKSHPKVHFVCMTEYDEKLEVPIAF--PSEELKNTLGEVLSKEGIKQLRIAETEKYAHVTFFFNGGVEKQNEG--EERCLIPSPKVATYDLKPEMSAYEVTEELIERIGSGKYDVIVLNLANMDMVGHSGIMEAAVKAVEVVDDCVGKIITA 432          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_PSEE4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas entomophila (strain L48) GN=gpmI PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.339e-32
Identity = 82/199 (41.21%), Postives = 114/199 (57.29%), Query Frame = 2
Query:  107 FVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIR-YAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            FV     G+AV  + DGDAV+  NFRADR   L++A    DF++F R R PK+  Y G+ QY  ++  P+ +  +P  +D   GEYL  NG      +ET K+ HVTFF++G R   F+   EE + IPS    T+++QP+M A E+ +R  +AI  +RF        N DMVGHTG  EA V A +A D  V  I++A
Sbjct:  235 FVKATRIGEAV-KVEDGDAVIFMNFRADRARELSRAFVEPDFNEFPRARLPKLAAYIGLTQYSAKIPAPAAF--APSSLDNVLGEYLAKNGKTQLRIAETEKYAHVTFFFSGGREEPFEG--EERILIPSPKVATYDLQPEMNAPEVTDRIVEAIEQQRFDVIVVNYANGDMVGHTGVFEAAVKAVEALDSCVGRIVEA 428          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SHELP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.284e-32
Identity = 79/226 (34.96%), Postives = 127/226 (56.19%), Query Frame = 2
Query:   29 HKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEID--RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            H ++ AVEA+     + + ND+++    I D +G+ V  + D DA++  NFRADR   + ++     FD F+R   PKI +  + +Y  ++K P  Y    P +D   T GE L +NG      SET K+ HVTFF+NG +   F+   E+ + I S    T+++QP+M + E+ ++  +AI S ++    C  PN DMVGHTG+ +A V AC+A D  +  +++A
Sbjct:  214 HLYQDAVEALDAAYGR-DENDEFVASSAITDADGQ-VATLNDNDALIFMNFRADRARQITRSFVDPGFDGFERAVTPKINFVMLTEYAADIKAPVAY----PSVDLVNTLGEVLQNNGKTQLRISETEKYAHVTFFFNGGKEEPFEG--EDRILIQSPKVATYDLQPEMSSTELTDKLVEAIESTQYDVIICNYPNGDMVGHTGNFDAAVKACEAVDACIGRVVEA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SHESW (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain W3-18-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.896e-32
Identity = 78/224 (34.82%), Postives = 128/224 (57.14%), Query Frame = 2
Query:   32 KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ++ +AV A++    + + ND+++    I D +GK V  + DGDA++  NFRADR   + ++  + DFD F+R   PK+ +  + +Y G++  P  Y   P E +  T GE L + G      SET K+ HVTFF+NG +   F+   E+ + I S    T+++QP+M + E+ ++   AI S ++    C  PN DMVGHTG+ +A V AC+A D  +  +++A
Sbjct:  215 QYDNAVTALEAAYAR-DENDEFVSSSAITDVDGK-VATLQDGDALIFMNFRADRARQITRSFIHPDFDGFERAVVPKMHFVTLTEYAGDITAPIAY---PSENLVNTLGEVLQNRGRTQLRISETEKYAHVTFFFNGGKEEPFEG--EDRILINSPKVATYDLQPEMSSTELTDKLVAAIESTKYDVIICNYPNGDMVGHTGNFDAAVKACEAVDTCIGRVVEA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SHEPC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=gpmI PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.896e-32
Identity = 78/224 (34.82%), Postives = 128/224 (57.14%), Query Frame = 2
Query:   32 KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ++ +AV A++    + + ND+++    I D +GK V  + DGDA++  NFRADR   + ++  + DFD F+R   PK+ +  + +Y G++  P  Y   P E +  T GE L + G      SET K+ HVTFF+NG +   F+   E+ + I S    T+++QP+M + E+ ++   AI S ++    C  PN DMVGHTG+ +A V AC+A D  +  +++A
Sbjct:  215 QYDNAVTALEAAYAR-DENDEFVSSSAITDVDGK-VATLQDGDALIFMNFRADRARQITRSFIHPDFDGFERAVVPKMHFVTLTEYAGDITAPIAY---PSENLVNTLGEVLQNRGRTQLRISETEKYAHVTFFFNGGKEEPFEG--EDRILINSPKVATYDLQPEMSSTELTDKLVAAIESTKYDVIICNYPNGDMVGHTGNFDAAVKACEAVDTCIGRVVEA 431          
The following BLAST results are available for this feature:
BLAST of FC920459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_SHEB51.582e-3336.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESR2.066e-3336.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESM2.066e-3336.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESA2.066e-3336.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEB92.066e-3336.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_METBU7.851e-3338.052,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEE41.339e-3241.212,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHELP2.284e-3234.962,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESW3.896e-3234.822,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEPC3.896e-3234.822,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32008F09EF RVDevelop1 Citrus clementina cDNA clone C32008F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920459 ID=FC920459; Name=FC920459; organism=Citrus clementina; type=EST; length=701bp
GGGATGCCCAAGTTCTTGGAGACACTCACACAAGTTTAAGAGCGCCGTTG
AAGCTGTCAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTA
CCTCCATTTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGT
AGATGGTGATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTA
TGCTTGCTAAGGCCCTTGAATATGAAGATTTTGACAAATTTGATCGAGTT
CGGTTCCCTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTT
GAAACTTCCCAGTCATTACCTTGTGTCTCCTCCAGAGATAGACAGAACAT
CTGGTGAATATTTAGTGCATAATGGTGTCCGTACTTTTGCTTGCAGTGAG
ACTGTCAAGTTTGGACATGTCACTTTCTTCTGGAATGGAAACCGCTCTGG
GTATTTCGACTCGAATTTGGAGGAATATGTGGAAATTCCTAGTGATTCTG
GAATTACTTTCAATGTACAGCCCAAGATGAAGGCTTTGGAGATTGCTGAG
AGGGCAAAGAAGGCCATCCTTAGTCGCAGGTTCCACCAGGGTACGTGTTA
CCTACCAAATAGTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAAGATATCATTGATGCA
A
back to top