FC920459

Overview
NameFC920459
Unique NameFC920459
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SHIDS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=gpmI PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 72/205 (35.12%), Postives = 108/205 (52.68%), Query Frame = 2
Query:   86 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ND+++   VI  E G+    + DGDA++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K    Y   P  +  T GE++  N       SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++    C  PN DMVGHTG +EA V A +A D  V ++  A
Sbjct:  232 NDEFVKATVIRAE-GQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAVAY--PPASLVNTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEESFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVDEVAKA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SALCH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella choleraesuis GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 71/205 (34.63%), Postives = 107/205 (52.20%), Query Frame = 2
Query:   86 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ND+++   VI  E G+A   + DGD ++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K    Y   P  +  T GE++  N       SET K+ HVTFF+NG     F    EE + I S    T+++QP+M + E+ E+   AI S ++    C  PN DMVGHTG +EA + A +A D  +  +  A
Sbjct:  232 NDEFVKATVIRAE-GQADAAMEDGDTLIFMNFRADRAREITRAFVNADFDGFARKKVVNLNFVMLTEYAADIKTTVAY--PPASLANTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEEPFAG--EERILINSPKVATYDLQPEMSSAELTEKLVAAIESGKYDTIICNYPNGDMVGHTGVMEAAIKAVEALDNCIDQVTKA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SACD2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 70/206 (33.98%), Postives = 110/206 (53.40%), Query Frame = 2
Query:   86 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIR-YAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ND+++    IVD +GK V  I DGDAV+  NFR DR   L  A   ++FD F R R P +  +    +Y  ++     Y   P ++  + GE +  NG +    +ET K+ HVTFF++G +   ++   E+ + +PS    T++ QP+M A E+  +   AI +  +    C   N D VGHTGD +A+V A +A D A+ ++  A
Sbjct:  232 NDEFVKATAIVDADGKPV-TIEDGDAVIFMNFRPDRARQLTNAFVDKNFDGFARARVPALSDFVMTTEYSADIDTSCAY--PPEDLVNSFGEVMAKNGKKQLRIAETEKYAHVTFFFSGGQESLYEG--EDRILVPSPQVETYDEQPEMSAPEVTAKLVDAIENGGYDAIICNYANCDQVGHTGDFDASVKAVEAVDAALAEVFAA 432          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_PSEF5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 73/186 (39.25%), Postives = 101/186 (54.30%), Query Frame = 2
Query:  146 IVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGML-QYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            + DGDAVV  NFRADR   L +    +DF  F+R R PK+    ML QY   +  PS +  +P  ++   G+YL  NG      +ET K+ HVTFF++G R   F    EE + IPS    T+++QP+M A E+ ++   AI  +R+        N DMVGH+G  EA V A +  D  V  I+DA
Sbjct:  247 VEDGDAVVFMNFRADRARELTRVFVEDDFKDFERPRQPKLAGFVMLTQYAASIPAPSAF--APGSLENVLGDYLAKNGKTQLRIAETEKYAHVTFFFSGGREEPFPG--EERILIPSPKVATYDLQPEMSAPEVTDKIVDAIEHQRYDVIIVNYANGDMVGHSGVFEAAVKAVECLDLCVGRIVDA 428          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_FRAP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 74/221 (33.48%), Postives = 123/221 (55.66%), Query Frame = 2
Query:   41 SAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEID-RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            SA+EA+++   +  +++  +P    + ++GK +  + D D+V+  NFRADR   ++ A   E+FD F + R   I +  + +YD +LK    +   PPE    T GE L+ N       +ET K+ HVTFF+NG +   F+   E+ + IPS    T+++QP+M A E+ ++   AI + ++    C   NSDMVGHTG+ EA + A +  D+ +  + DA
Sbjct:  215 SALEALEESYARDQSDEFVIP--TCIQKDGKLI-KVEDNDSVIFMNFRADRAREISHAFTDENFDHFPKDRHLNINFTTLTEYDSKLKCNVAF---PPEQPVNTLGEVLMKNHKTQLRIAETEKYPHVTFFFNGGKEDQFEG--EDRILIPSPKVATYDLQPEMSAPEVTDKLVDAINNGKYDCIVCNYANSDMVGHTGNYEAAMQAIEYLDKCLARLKDA 427          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_BACHD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus halodurans GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 72/223 (32.29%), Postives = 117/223 (52.47%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDR-VRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            + SA++ +K   E  + +D+++ P VI +E+G  V  I D DA++ FNFR DR + +++    +DF  FDR  + P+  Y   L +  E  +       P  +D T GE L     +    +ET K+ HVTFF++G R   F    EE + I S    T++++P+M A E+ +     I + +         N DMVGH+G +E T+ A +A DE +  ++DA
Sbjct:  213 YSSALDVIKDSYEN-SIHDEFVIPSVITNEDGSPVATIEDDDAIIFFNFRPDRAIQMSQVFTNKDFRGFDRGEKLPQNVYYVCLTHFSE-TVQGDVAFKPTNLDNTLGEVLAQQNYKQLRIAETEKYPHVTFFFSGGREEPFPG--EERILIDSPKVATYDLKPEMSAYEVTDALLNEIEADKHDVIILNFANPDMVGHSGMLEPTIKAVEAVDECLGKVVDA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_YERE8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 72/208 (34.62%), Postives = 110/208 (52.88%), Query Frame = 2
Query:   80 NANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGML-QYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            N ND+++ P VI    G+    + DGDA++  NFRADR   + +     DFD F R +        ML +Y  ++K+   Y   P  ++ T GE+L+ +       SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++    C  PN DMVGHTGD +A V A +  D  ++ ++ A
Sbjct:  230 NENDEFVKPTVI-QAAGEPDAAMNDGDALIFMNFRADRARQITRTFVNADFDGFKRDKVVNFGDFIMLTEYAADIKVACAY--PPASLENTFGEWLMKHDKTQLRISETEKYAHVTFFYNGGVEEPFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVGAIASGKYDVIICNYPNGDMVGHTGDYDAAVKAVETLDNCIEQVVAA 432          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_THERP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 80/223 (35.87%), Postives = 119/223 (53.36%), Query Frame = 2
Query:   38 KSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKAL-EYEDFDKFDRVRFPK-IRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            +S +EA+++   Q    D+++ P VIVD  GK +  I DGDAV+ FNFRADR   L +AL +   F  F R R+P+ +    M +Y  E   P     +P  +       L   G+R F  +ET K+ HVT+F+NG R   F    E+ + +PS    T++++P+M A E+ + A +AI+S+R+        N DMVGHTG   A V A +  D  +  I  A
Sbjct:  215 RSPLEAIERSYAQ-GITDEFIVPTVIVDAEGKPLATINDGDAVIFFNFRADRARQLTQALTDAGGFTAFPRCRWPRDLLMVTMAEY--EPHFPVLVAFAPDIVRVPLARVLSDVGLRQFHTAETEKYAHVTYFFNGGREEPFPG--EDRLLVPSPKVPTYDLKPEMSAPEVTDAAVQAIVSQRYAFVLVNYANPDMVGHTGVFAAAVAAVECVDRCLGRIEQA 432          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_CLOAB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium acetobutylicum GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 79/221 (35.75%), Postives = 114/221 (51.58%), Query Frame = 2
Query:   38 KSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNL-EEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIID 697
            +SA++AV       N  D+++ P VIV E GK V  I D D+V+ FNFR DR   + +A+  E FD F R R   I +  M +YD   K        P  I  T GEY+ + G+     +ET K+ HVTFF+NG   G  + N  E+   I S    T++++P+M A E+ +   K +   ++        N DMVGHTG +EA   A +  DE +  I+D
Sbjct:  214 ESAIKAVDASYHD-NKTDEFVLPTVIVKE-GKPVATIKDKDSVIFFNFRPDRARQITRAIAEEAFDGFKRDRL-NIEFVTMTEYDASFK-GVDVAFGPENITNTLGEYVSNKGLNQLRIAETEKYAHVTFFFNG---GVEEPNKNEDRALISSPKVATYDLKPEMSAYEVTDELLKRLDEDKYDMVILNFANPDMVGHTGILEAAKKAVETVDECLGKIVD 427          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_VIBVY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio vulnificus (strain YJ016) GN=gpmI PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 74/222 (33.33%), Postives = 115/222 (51.80%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            + SAV  +    E+   ND+++    I  E G+    + DGDAV+  N+RADR   + +     DF  F+R  FP + +  + QY  ++ L   +   P  ++ T GE+L   G      SET K+ HVTFF+NG     F     + V  P  +  T+++QP+M + E+ E+   AI S ++    C  PN+DMVGHTG  EA   A +A D +V  +++A
Sbjct:  215 YDSAVAGLAAAYER-GENDEFVKATEIKAE-GQESAAMQDGDAVIFMNYRADRARQITRTF-VADFAGFERAAFPAVNFVMLTQYAADIPLAIAF--PPASLENTYGEWLSKQGQTQLRISETEKYAHVTFFFNGGVETEFAGEERQLVASPKVA--TYDLQPEMSSTELTEKMVAAIKSGKYDTIICNYPNADMVGHTGVYEAAEKAIEALDASVGQVVEA 429          
The following BLAST results are available for this feature:
BLAST of FC920459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_SHIDS1.098e-2635.122,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SALCH1.434e-2634.632,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SACD21.434e-2633.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEF51.434e-2639.252,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRAP21.434e-2633.482,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACHD1.434e-2632.292,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_YERE81.873e-2634.622,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_THERP1.873e-2635.872,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOAB1.873e-2635.752,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBVY2.446e-2633.332,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC32008F09EF RVDevelop1 Citrus clementina cDNA clone C32008F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920459 ID=FC920459; Name=FC920459; organism=Citrus clementina; type=EST; length=701bp
GGGATGCCCAAGTTCTTGGAGACACTCACACAAGTTTAAGAGCGCCGTTG
AAGCTGTCAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTA
CCTCCATTTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGT
AGATGGTGATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTA
TGCTTGCTAAGGCCCTTGAATATGAAGATTTTGACAAATTTGATCGAGTT
CGGTTCCCTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTT
GAAACTTCCCAGTCATTACCTTGTGTCTCCTCCAGAGATAGACAGAACAT
CTGGTGAATATTTAGTGCATAATGGTGTCCGTACTTTTGCTTGCAGTGAG
ACTGTCAAGTTTGGACATGTCACTTTCTTCTGGAATGGAAACCGCTCTGG
GTATTTCGACTCGAATTTGGAGGAATATGTGGAAATTCCTAGTGATTCTG
GAATTACTTTCAATGTACAGCCCAAGATGAAGGCTTTGGAGATTGCTGAG
AGGGCAAAGAAGGCCATCCTTAGTCGCAGGTTCCACCAGGGTACGTGTTA
CCTACCAAATAGTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAAGATATCATTGATGCA
A
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