FC920459

Overview
NameFC920459
Unique NameFC920459
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_THICR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thiomicrospira crunogena (strain XCL-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 76/221 (34.39%), Postives = 115/221 (52.04%), Query Frame = 2
Query:   38 KSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIR-YAGMLQYDGEL-KLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDII 694
            K A EAV+ L      ND+++   VI   NGK    + DGD+V+  NFR+DR   L +A   +DF  F R + P +  +  + +Y     K  +     P  +  T GEY+   G++    +ET K+ HVTFF+NG      D+ +   +  P  +  T+++QP+M   E+ E+   AI S  +    C + N DMVGHTGD  A V A +A DEA+ +I+
Sbjct:  220 KDAKEAVE-LAYARGENDEFIQATVIPRNNGKPAR-VKDGDSVIFMNFRSDRARQLTEAFIMDDFADFHRCKTPVLSAFVTLTEYKKNFEKFGALVAYRPTSLRNTFGEYVSKKGLKQLRIAETEKYAHVTFFFNGGVEEPNDNEVRILINSPQVA--TYDLQPEMSLPELKEKLIDAIKSGEYDTFICNIANPDMVGHTGDFNACVQAAEAVDEALGEIL 436          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_CLOBL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 80/221 (36.20%), Postives = 122/221 (55.20%), Query Frame = 2
Query:   41 SAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNL-EEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIID 697
            SAVE ++K   + N  D+++ P V++ E GK    I + D+VV FNFR DR   L +A+  + FD F+R     + Y  M +YD  L+  +  +  PPE ++ T GEY+  NG +    +ET K+ HVTFF+NG   G  + N  E+ V IPS    T+++QP+M A E+ ++  + +   ++        N DMVGHTG  EA   A +  DE V  I++
Sbjct:  215 SAVEGLEK-SYRDNKTDEFVLPSVVLKE-GKPKAKIENKDSVVFFNFRPDRARELTRAINDKVFDGFERETLD-LTYVTMTEYDSTLE--NVEVAFPPEHLNNTLGEYVSKNGKKQLRIAETEKYAHVTFFFNG---GVEEPNEGEDRVLIPSPKVATYDMQPEMNAYEVTDKLLERLDEDKYDMVILNFANPDMVGHTGVFEAAKKAIETVDECVGKIVN 427          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI2_METBF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gpmI2 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 69/203 (33.99%), Postives = 109/203 (53.69%), Query Frame = 2
Query:   89 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIID 697
            +Q +   VI ++  K V  + D D+V+ FNFRADR   +  A   +DFD F R + P++ +  M QYD  L++P  +   P +++   GE L  +G+     +ET K+ HVT+F NG     +    E+   IPS    T++++P+M A EI +   + I S ++        N DMVGHTG  EA V A +A D+ +  I++
Sbjct:  243 EQVITEQVITEQAEKPVATVQDNDSVIFFNFRADRARQITWAFVKDDFDGFMREKRPEVYFVCMTQYDETLEVPIAF--PPIKLENVLGEVLSKHGLIQLRIAETEKYAHVTYFLNGGEEKRYKD--EDRCLIPSPKIATYDLKPEMSAYEITDEVIRRIQSGKYDVIVLNFANMDMVGHTGIFEAAVKAVEAVDKCIGRIVE 441          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_BACP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus pumilus (strain SAFR-032) GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 69/205 (33.66%), Postives = 108/205 (52.68%), Query Frame = 2
Query:   89 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDR-VRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            D+++ P VI  ENG+ V  + DGD+V+ +NFR DR + ++     EDF  FDR    PK  +     +  E  +  +    P  +D T GE L  NG++    +ET K+ HVTFF +G R   F    E+ + I S    T++++P+M A E+ +     I + +         N DMVGH+G +E T+ A +A DE +  ++DA
Sbjct:  230 DEFVIPSVITRENGEPVAKVNDGDSVIFYNFRPDRAIQISNTFTNEDFRSFDRGEAHPKNLHFVCFTHFSE-TVDGYVAFKPVNLDNTVGEVLAQNGLKQLRIAETEKYPHVTFFMSGGREEEFPG--EDRILINSPDVATYDLKPEMSAYEVKDALVADINADKHDAIILNFANPDMVGHSGMLEPTIKAIEAVDECLGAVVDA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_VIBVU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio vulnificus GN=gpmI PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 74/222 (33.33%), Postives = 115/222 (51.80%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            + SAV  +    E+   ND+++    I  E G+    + DGDAV+  N+RADR   + +     DF  F+R  FP + +  + QY  ++ L   +   P  ++ T GE+L   G      SET K+ HVTFF+NG     F     + V  P  +  T+++QP+M + E+ E+   AI S ++    C  PN+DMVGHTG  EA   A +A D +V  +++A
Sbjct:  215 YDSAVAGLAAAYER-GENDEFVKATEIKAE-GQESAAMQDGDAVIFMNYRADRARQITRTF-VADFAGFERAVFPAVNFVMLTQYAADIPLAIAF--PPASLENTYGEWLSKQGQTQLRISETEKYAHVTFFFNGGVETEFAGEERQLVASPKVA--TYDLQPEMSSTELTEKMVAAIKSGKYDTIICNYPNADMVGHTGVYEAAEKAIEALDASVGQVVEA 429          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_PSEAE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas aeruginosa GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 75/207 (36.23%), Postives = 113/207 (54.59%), Query Frame = 2
Query:   86 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGML-QYDGELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            +D+++    +V    +AV  + DGDAV+  NFRADR   L++A     F++F R R P++    ML QY   +  P  +   PPE +    GEYL  +G      +ET K+ HVTFF++G R   ++   EE + IPS    T+++QP+M A E+ +R  +AI  +R+        N DMVGHTG  EA V A +  D  +  I++A
Sbjct:  232 SDEFVKATAVVPAGAEAVR-VEDGDAVIFMNFRADRARELSRAFVEPAFNEFPRERAPQLAGFVMLTQYAASIPAPCAF---PPEPLTNVLGEYLAKHGKTQLRIAETEKYAHVTFFFSGGREEPYEG--EERILIPSPKVATYDLQPEMSAPEVTDRIVEAIEQQRYDVIVVNYANGDMVGHTGVFEAAVKAVECLDTCMGRIVEA 432          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_LISMF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 75/224 (33.48%), Postives = 119/224 (53.12%), Query Frame = 2
Query:   32 KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDR-VRFPK-IRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIID 697
            KF+  +E VK      + ND+++ P  I+ ++GK V  + D DAV+ FNFR DR + L+ A   +++D FDR    PK I++  M  Y+    + +     P E+    GE L + G+     +ET K+ HVTFF NG R+  F    E  + I S    T+++QP+M A E+ +   + I + +         N DMVGH+G +E T+ A +A DE +  ++D
Sbjct:  212 KFEDPIELVKASYAN-DKNDEFVVP-AIITKDGKPVATVKDNDAVIFFNFRPDRAIQLSNAFTDKEWDHFDRGANHPKNIKFVTMTLYNP--SIDAEVAFEPIEMKNVIGEVLSNEGLSQLRIAETEKYPHVTFFMNGGRNEEFPG--ENRILINSPKVETYDLQPEMSAYEVTDALVEDIKNDKHDAIILNFANPDMVGHSGMLEPTIKAIEAVDENLGRVVD 429          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_FLAJ1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 73/209 (34.93%), Postives = 107/209 (51.20%), Query Frame = 2
Query:   74 QPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            + +  D+++ P VIVDEN K +  IV+GD V+ FNFR DR   L +AL   DF + +  +   + Y  +  YD E       + +   I  T GE L   G +    +ET K+ HVTFF++G R   F+   E  +   S    T+++QP+M A E+A+     +             N DMVGHTG +EA + AC+A D   K +IDA
Sbjct:  223 EKDVTDEFIEPVVIVDENAKPLATIVEGDVVIFFNFRTDRGRELTEALSQHDFHEQNMHKL-NLYYVTLTNYD-ETYQNVKVVYNKDNITETLGEVLEKAGKKQIRIAETEKYPHVTFFFSGGREIPFEG--ESRILRNSPKVATYDLQPEMSAYELADALVPELNKGEVDFVCLNFANGDMVGHTGIMEAAIKACEAVDACAKKVIDA 427          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_LISW6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 75/224 (33.48%), Postives = 119/224 (53.12%), Query Frame = 2
Query:   32 KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDR-VRFPK-IRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIID 697
            KF+  +E VK      + ND+++ P  I+ ++GK V  + D DAV+ FNFR DR + L+ A   +++D FDR    PK I++  M  Y+    + +     P E+    GE L + G+     +ET K+ HVTFF NG R+  F    E  + I S    T+++QP+M A E+ +   + I + +         N DMVGH+G +E T+ A +A DE +  ++D
Sbjct:  212 KFEDPIELVKASYAN-DKNDEFVVP-AIITKDGKPVATVKDNDAVIFFNFRPDRAIQLSNAFTDKEWDHFDRGANHPKNIKFVTMTLYNP--SVDAEVAFEPIEMKNVIGEVLSNEGLSQLRIAETEKYPHVTFFMNGGRNEEFPG--ENRILINSPKVETYDLQPEMSAYEVTDALVEDIKNDKHDAIILNFANPDMVGHSGMLEPTIKAIEAVDENLGRVVD 429          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_CLOB1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 79/221 (35.75%), Postives = 122/221 (55.20%), Query Frame = 2
Query:   41 SAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNL-EEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIID 697
            SAVE ++K   + N  D+++ P V++ E GK    I + D+VV FNFR DR   L +A+  + FD F+R     + Y  + +YD  L+  +  +  PPE ++ T GEY+  NG +    +ET K+ HVTFF+NG   G  + N  E+ V IPS    T+++QP+M A E+ ++  + +   ++        N DMVGHTG  EA   A +  DE V  I++
Sbjct:  215 SAVEGLEK-SYRDNKTDEFVLPSVVLKE-GKPKAKIENKDSVVFFNFRPDRARELTRAINDKVFDGFERETLD-LTYVTVTEYDSTLE--NVEVAFPPEHLNNTLGEYVSKNGKKQLRIAETEKYAHVTFFFNG---GVEEPNEGEDRVLIPSPKVATYDMQPEMNAYEVTDKLLERLDEDKYDMVILNFANPDMVGHTGVFEAAKKAIETVDECVGKIVN 427          
The following BLAST results are available for this feature:
BLAST of FC920459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_THICR2.446e-2634.392,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOBL2.446e-2636.202,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI2_METBF2.446e-2633.992,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACP23.195e-2633.662,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBVU4.173e-2633.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEAE4.173e-2636.232,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISMF5.449e-2633.482,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FLAJ15.449e-2634.932,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISW67.117e-2633.482,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOB17.117e-2635.752,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC32008F09EF RVDevelop1 Citrus clementina cDNA clone C32008F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920459 ID=FC920459; Name=FC920459; organism=Citrus clementina; type=EST; length=701bp
GGGATGCCCAAGTTCTTGGAGACACTCACACAAGTTTAAGAGCGCCGTTG
AAGCTGTCAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTA
CCTCCATTTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGT
AGATGGTGATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTA
TGCTTGCTAAGGCCCTTGAATATGAAGATTTTGACAAATTTGATCGAGTT
CGGTTCCCTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTT
GAAACTTCCCAGTCATTACCTTGTGTCTCCTCCAGAGATAGACAGAACAT
CTGGTGAATATTTAGTGCATAATGGTGTCCGTACTTTTGCTTGCAGTGAG
ACTGTCAAGTTTGGACATGTCACTTTCTTCTGGAATGGAAACCGCTCTGG
GTATTTCGACTCGAATTTGGAGGAATATGTGGAAATTCCTAGTGATTCTG
GAATTACTTTCAATGTACAGCCCAAGATGAAGGCTTTGGAGATTGCTGAG
AGGGCAAAGAAGGCCATCCTTAGTCGCAGGTTCCACCAGGGTACGTGTTA
CCTACCAAATAGTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAAGATATCATTGATGCA
A
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