FC920459

Overview
NameFC920459
Unique NameFC920459
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15077 contig Ccv1_Contig15077:763..1463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_PSEPK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas putida (strain KT2440) GN=gpmI PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.646e-32
Identity = 82/199 (41.21%), Postives = 113/199 (56.78%), Query Frame = 2
Query:  107 FVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIR-YAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            FV     G+AV  + DGDAV+  NFRADR   L++A    DF +F R R PK+  Y G+ QY  ++  P+ +  +P  ++   GEYL  NG      +ET K+ HVTFF++G R   F+   EE + IPS    T+++QP+M A E+ +R  +AI  +RF        N DMVGHTG  EA V A +A D  V  I+DA
Sbjct:  235 FVKATRIGEAV-KVEDGDAVIFMNFRADRARELSRAFVEPDFTEFARARLPKMAAYIGLTQYSAKIPAPAAF--APSSLNNVLGEYLAKNGKTQLRIAETEKYAHVTFFFSGGREEPFEG--EERILIPSPKVATYDLQPEMSAPEVTDRIVEAIEQQRFDVIVVNYANGDMVGHTGVFEAAVKAVEALDTCVGRIVDA 428          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI2_METAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Methanosarcina acetivorans GN=gpmI2 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.680e-32
Identity = 77/204 (37.75%), Postives = 110/204 (53.92%), Query Frame = 2
Query:   89 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            D+++ P V+   +GK    + D D+++ FNFR DR   L  A E +DFD F R + PK+ Y  M QYD  L LP  +   P E++   GE L   G+     +ET K+ HVTFF NG +   +D   E+   IPS    T++++P+M A E+ +   + I S ++        N DMVGHTG  EA V A +A D  V  II+A
Sbjct:  239 DEFVKPTVVTGSDGKPEAVVQDNDSIIFFNFRPDRARQLTWAFENDDFDGFPREKRPKVHYVCMAQYDETLDLPIAF--PPEELENVLGEVLSKQGLVQLRIAETEKYAHVTFFLNGGQEKCYDG--EDRCLIPSPKVATYDLKPEMSAYEVTDEVIRRIQSGKYDVIVLNFANMDMVGHTGIFEAAVQAVEAVDTCVGRIIEA 438          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SHEAM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gpmI PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.134e-31
Identity = 80/228 (35.09%), Postives = 129/228 (56.58%), Query Frame = 2
Query:   29 HKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELK----LPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            H   +AV+A++    + + ND+++ P  IVD NG +V  + D DA++  NFRADR   ++++     F  F+R   PK  +  + +Y G+++     PS  LV+      T GE L ++G      SET K+ HVTFF+NG +   FD   E+ + I S    T+++QP+M + E+ ++  +AI S ++    C  PN DMVGHTG+ +A V AC+A D  +  ++DA
Sbjct:  213 HSATNAVDALEAAYAR-DENDEFVAPTAIVDANGDSVS-LNDNDALIFMNFRADRARQISRSFTDPAFAGFERAVTPKTHFVMLTEYAGDIQGDIAFPSEDLVN------TLGEVLQNSGKTQLRISETEKYAHVTFFFNGGKEQPFDG--EDRILINSPKVATYDLQPEMSSTELTDKLVEAIESAKYDVIICNYPNGDMVGHTGNFDAAVKACEAVDTCIGRVVDA 430          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_PSEPG (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas putida (strain GB-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.134e-31
Identity = 82/199 (41.21%), Postives = 113/199 (56.78%), Query Frame = 2
Query:  107 FVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIR-YAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            FV     G+AV  + DGDAVV  NFRADR   L++A    DF +F R R PK+  Y G+ QY  ++  P+ +  +P  ++   GEYL  NG      +ET K+ HVTFF++G R   F+   EE + IPS    T+++QP+M A ++ +R  +AI  +RF        N DMVGHTG  EA V A +A D  V  I+DA
Sbjct:  235 FVKATRIGEAV-KVEDGDAVVFMNFRADRARELSRAFVEPDFTEFARARLPKMAAYIGLTQYSAKIPAPAAF--APSSLNNVLGEYLAKNGKTQLRIAETEKYAHVTFFFSGGREEPFEG--EERILIPSPKVATYDLQPEMNAPQVTDRIVEAIEQQRFDVIVVNYANGDMVGHTGVFEAAVKAVEALDTCVGRIVDA 428          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_PSEP1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=gpmI PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.134e-31
Identity = 82/199 (41.21%), Postives = 112/199 (56.28%), Query Frame = 2
Query:  107 FVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIR-YAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            FV     G AV  + DGDAV+  NFRADR   L++A    DF +F R R PK+  Y G+ QY  ++  P+ +  +P  ++   GEYL  NG      +ET K+ HVTFF++G R   F+   EE + IPS    T+++QP+M A E+ +R  +AI  +RF        N DMVGHTG  EA V A +A D  V  I+DA
Sbjct:  235 FVKATRIGDAV-KVEDGDAVIFMNFRADRARELSRAFVEPDFTEFARARLPKMAAYIGLTQYSAKIPAPAAF--APSSLNNVLGEYLAKNGKTQLRIAETEKYAHVTFFFSGGREEPFEG--EERILIPSPKVATYDLQPEMSAPEVTDRIVEAIEQQRFDVIVVNYANGDMVGHTGVFEAAVKAVEALDTCVGRIVDA 428          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SHEDO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=gpmI PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.526e-31
Identity = 74/222 (33.33%), Postives = 125/222 (56.31%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            + +AV+A++    + + ND+++    I D  G+    + DGD+++  NFRADR   + +++   DFD F+R   PKI +  + +Y  ++  P  +  S  ++  T GE L + G      SET K+ HVTFF+NG +   F    E+ + IPS    T+++QP+M + E+ ++  +AI S ++    C  PN DMVGHTG+ +A V AC+A D  +  ++ A
Sbjct:  216 YSNAVDALEAAYSR-DENDEFVAASSITDAQGQTAS-LNDGDSLIFMNFRADRARQITRSVINADFDGFERAVTPKINFVTLTEYAADISAPKAF--SSSDLVNTLGETLQNLGKTQLRISETEKYAHVTFFFNGGKEDPFKG--EDRIMIPSPKVATYDLQPEMNSTELTDKLVEAIESAKYDVVICNYPNGDMVGHTGNFDAAVKACEAVDACIGRVVAA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SHEON (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella oneidensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 76/223 (34.08%), Postives = 124/223 (55.61%), Query Frame = 2
Query:   32 KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ++ +AV A++    + + ND+++    I D NG+ V  + DGDA++  NFRADR   + ++    +FD F R   PK+ +  + +Y  ++K P  Y      +  T GE L + G      SET K+ HVTFF+NG +   F  N E+ + I S    T+++QP+M + E+ ++   AI S ++    C  PN DMVGHTG+ +A V AC+A D  +  +++A
Sbjct:  215 QYDNAVTALEAAYSR-DENDEFVSSSAITDANGQ-VATLQDGDALIFMNFRADRARQITRSFINPEFDGFARAVTPKVNFVTLTEYAADIKAPIAY--PSDNLVNTLGEVLQNRGRTQLRISETEKYAHVTFFFNGGKEEPF--NGEDRILINSPKVATYDLQPEMSSTELTDKLVAAIESTKYDVIICNYPNGDMVGHTGNFDAAVKACEAVDACIGRVVEA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_COLP3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gpmI PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 78/225 (34.67%), Postives = 124/225 (55.11%), Query Frame = 2
Query:   29 HKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGML-QYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            H++ SA++A+    E+ N ND+++    I   +GKA+  + DGDA++  NFRADR    ++     +F+ F+R R P I    ML QY  ++  PS +  +P  +    GE+L  +       SET K+ HVTFF++G +   F    EE + +PS    T+++QP+M +  + ++   AI S ++    C  PN DMVGHTG  +A V AC+A D  V  ++ A
Sbjct:  219 HQYNSALDALAAAYER-NENDEFVGASAITSPSGKAI-KVNDGDALIFMNFRADRARQFSRCFTDTNFNGFERKRIPAISNFVMLTQYAADIDAPSAF--APTPLTNVMGEWLAKHNKTQLRISETEKYAHVTFFFSGGKEDMFTG--EERILVPSPDVATYDLQPEMNSTLLTDKLVGAIESGKYDFIVCNYPNGDMVGHTGSFDAAVKACEAVDTCVGRVVKA 437          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SALRD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salinibacter ruber (strain DSM 13855) GN=gpmI PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.626e-31
Identity = 81/226 (35.84%), Postives = 118/226 (52.21%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGP----IVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            F   V A+K   +     D+++ P  I  ++  A G     I DGDAVV +NFR+DR   L +A    DFD F+R R   + +  M  YD E  LP  +      ++ T GE L   G R    +ET K+ HVT+F++G R   FD   E+ V +PS    T++ QP+M A E+A+R  +++    +        N DMVGHTGD EA V AC+A D   + +++A
Sbjct:  216 FDDPVTALKASYDD-GVTDEFVEPRRIRADDADAFGDHGTRIEDGDAVVYYNFRSDRARQLTRAFTEADFDGFERERPDDLLFVTMSPYDDEFDLPVAF--EKLNLEGTLGEVLSARGGRQLRAAETEKYAHVTYFFSGGREAPFDG--EDRVLVPSPKVDTYDQQPEMSAPELADRVSRSLREADYTLAVLNFANPDMVGHTGDFEAAVAACEAVDRGARQVVEA 436          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_METMA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanosarcina mazei GN=gpmI PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.348e-31
Identity = 80/224 (35.71%), Postives = 115/224 (51.34%), Query Frame = 2
Query:   29 HKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            +K   AV AV +  E+    D+++ P ++ D  G     I D D++V  NFR DR   L  A   +DF+ F R + PK+ Y  M QYD  L LP  +   P E+    G+ L   G+     +ET K+ HVTFF NG +   +    E+   IPS    T++++P+M A E+ +   K ILS ++        N DMVGHTGD EA V A +  D  V  I++A
Sbjct:  220 YKTSDAVTAVSEAYER-GETDEFIKPTIVTDSEGNPEAVIQDTDSIVFLNFRPDRARQLTWAFVKDDFEGFTREKRPKVHYVCMAQYDETLDLPIAF--PPEELTDVLGKVLSDRGLIQLRIAETEKYAHVTFFLNGGQEKCYSG--EDRCLIPSPKISTYDLKPEMSAYEVTDEVVKRILSGKYDVIILNFANMDMVGHTGDFEAAVKAVETVDNCVGRIVEA 438          
The following BLAST results are available for this feature:
BLAST of FC920459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_PSEPK6.646e-3241.212,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI2_METAC8.680e-3237.752,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEAM1.134e-3135.092,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEPG1.134e-3141.212,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEP11.134e-3141.212,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEDO2.526e-3133.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEON4.308e-3134.082,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COLP34.308e-3134.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SALRD5.626e-3135.842,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_METMA7.348e-3135.712,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32008F09EF RVDevelop1 Citrus clementina cDNA clone C32008F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920459 ID=FC920459; Name=FC920459; organism=Citrus clementina; type=EST; length=701bp
GGGATGCCCAAGTTCTTGGAGACACTCACACAAGTTTAAGAGCGCCGTTG
AAGCTGTCAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTA
CCTCCATTTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGT
AGATGGTGATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTA
TGCTTGCTAAGGCCCTTGAATATGAAGATTTTGACAAATTTGATCGAGTT
CGGTTCCCTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTT
GAAACTTCCCAGTCATTACCTTGTGTCTCCTCCAGAGATAGACAGAACAT
CTGGTGAATATTTAGTGCATAATGGTGTCCGTACTTTTGCTTGCAGTGAG
ACTGTCAAGTTTGGACATGTCACTTTCTTCTGGAATGGAAACCGCTCTGG
GTATTTCGACTCGAATTTGGAGGAATATGTGGAAATTCCTAGTGATTCTG
GAATTACTTTCAATGTACAGCCCAAGATGAAGGCTTTGGAGATTGCTGAG
AGGGCAAAGAAGGCCATCCTTAGTCGCAGGTTCCACCAGGGTACGTGTTA
CCTACCAAATAGTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAAGATATCATTGATGCA
A
back to top