FC920459

Overview
NameFC920459
Unique NameFC920459
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_ARCB4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Arcobacter butzleri (strain RM4018) GN=gpmI PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 64/204 (31.37%), Postives = 100/204 (49.02%), Query Frame = 2
Query:   89 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEY-VEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIID 697
            D+++ P      NG     I   D ++  NFR+DRM  ++      DF++FD  +   + +A M QYD  + +P  +    P+   T  E + + G+     +ET K+ HVTFF+NG   G  +  L E  V IPS    T++++P+M A E+    + A ++           N DMVGHTG  EA V A +A D  +  I +
Sbjct:  222 DEFIEPTSFEGYNG-----IEKNDGIIFCNFRSDRMREISSVFAKADFNEFDTFK-GSLNFASMTQYDKNVFIPVLFPKDNPK--NTLAEVISNAGLSQLHTAETEKYAHVTFFFNG---GVEEPVLNESRVLIPSPQVATYDLKPEMSAPEVGSAVRTA-MNNNIDFIVVNFANGDMVGHTGVFEAAVKAVEAVDFELGQIFE 413          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_STRCO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Streptomyces coelicolor GN=gpmI PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 64/204 (31.37%), Postives = 96/204 (47.06%), Query Frame = 2
Query:   89 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            D+++P  V+ +     V    DGDAV+ FNFR+DR+   A  L +E      R     +    + QYD    +P+  LV   +      + L   G+R+   +ET KF HVT++ NG  +   D   EE+V I  +    +   P M    + +   +A            L N D+VGHTG++ ATV AC+A D AV  I+ A
Sbjct:  233 DEWVPASVLTEAGDARVA---DGDAVLWFNFRSDRIQQFADRL-HEHLTASGRT----VNMVSLAQYDTRTAIPA--LVKRADASGGLADELQEAGLRSVRIAETEKFEHVTYYINGRDATVRDG--EEHVRITGEGKADYVAHPHMNLDRVTDAVVEAAGRVDVDLVIANLANIDVVGHTGNLAATVTACEATDAAVDQILQA 424          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SILST (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Silicibacter sp. (strain TM1040) GN=gpmI PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.540e-17
Identity = 61/187 (32.62%), Postives = 94/187 (50.27%), Query Frame = 2
Query:  146 IVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIR-YAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGI-TFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            I +GD     NFRADR   + +A+    F +FD    P +    GM++Y                I  T GE++   G R F  +ET K+ HVTFF NG +       + E   +P    + T+++QP+M A E+  +  +AI +      T Y  N DMVGHTGD++A + AC+A D+ + +++ A
Sbjct:  243 IKEGDGFFCLNFRADRAREILRAIGEPGFAEFDTGPRPALAALLGMVEYSEGHNAYMTTAYPKRAIVNTLGEWVAKQGKRQFRLAETEKYPHVTFFLNGGKE---TPEVGEDRFMPKSPKVATYDLQPEMSAPEVTAKFVEAIRAGYDLIVTNYA-NPDMVGHTGDLDAAIKACEAVDQGLGEVVAA 425          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_HELPH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter pylori (strain HPAG1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 65/209 (31.10%), Postives = 99/209 (47.37%), Query Frame = 2
Query:   80 NANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYL----PNSDMVGHTGDIEATVVACKAADEAVKDII 694
            N  D+++ P    +  G     + D ++ +  NFR DR   +  AL  ++F  F R  F K+  A M  YD     P   L     +  T  E +  + +     +ET K+ HVTFF NG     F +  E  V IPS    T++++P+M A E+      A+L  +   GT  +     N DMVGHTG+ EA+V A +A D  + +I+
Sbjct:  218 NITDEFITPACFKNYYG-----MQDDESFIFINFRNDRAREIVSALGQKEFSGFKRQAFKKLHIATMTPYDNTFPYP--VLFPKESVQNTLAEVVSQHNLTQSHIAETEKYAHVTFFINGGVETPFKN--ENRVLIPSPKVTTYDLKPEMSAKEVT----LAVL-EQMKLGTDLIIVNFANGDMVGHTGNFEASVKAVEAVDACLGEIL 412          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_WOLSU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Wolinella succinogenes GN=gpmI PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 60/208 (28.85%), Postives = 99/208 (47.60%), Query Frame = 2
Query:   74 QPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIID 697
            Q    D+++ P  +    G         D  V  NFR+DR   +  AL    F+ FDR  +   +   M  YD     P   L    +++ T  + +   G+     +ET K+ HVTFF+NG     +++  E  V IPS S  T++++P+M A E+AE A  + + + +        N DMVGHTG+ EA + A ++ D  +  +++
Sbjct:  217 QAGITDEFIEPAALGGYQG-----FEPSDGFVFANFRSDRAREIVSALGGASFEGFDRGAYQPPKTLAMTSYDDSFPFP--ILFPKEKVEPTLAQVISEAGLSQLHVAETEKYAHVTFFFNGGIETPWEN--ESRVLIPSPSVATYDLKPEMSAPEVAE-ATLSGMRQGYDFIVVNFANGDMVGHTGNTEAAISAVESVDRELGRLLE 414          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_MYCGE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma genitalium GN=gpmI PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 59/212 (27.83%), Postives = 104/212 (49.06%), Query Frame = 2
Query:   74 QPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKF--DRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNL--EEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIID 697
            Q    D+++ P +  + N      + + D V++FNFR DR   ++  +   ++  +  +  R   + +  M+ Y+G +  PS +   P  I  + GE + +N ++    +ET K+ HVTFF++G     F+ NL  E    IPS    T+++ P+M    I +   + +    F        N DMVGHTG+ +A + A +A D  +K I+D
Sbjct:  222 QNQITDEFIYPAINANLNSDQFA-LNNNDGVISFNFRPDRARQMSHLIFNSNYYNYQPELKRKENLFFVTMMNYEGIV--PSEFAFPPQTIKNSLGEVIANNNLKQLRIAETEKYAHVTFFFDGG----FEVNLSNETKTLIPSLKVATYDLAPEMSCKAITDALLEKL--NNFDFTVLNFANPDMVGHTGNYQACIKALEALDVQIKRIVD 424          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_PARDP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Paracoccus denitrificans (strain Pd 1222) GN=gpmI PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 61/205 (29.76%), Postives = 96/205 (46.83%), Query Frame = 2
Query:   89 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPK-IRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            D+++ P V+    G       DGD     NFRADR   +  A+   DF  FD  R P+     GM+ Y               ++  T G ++   G+R F  +ET K+ HVTFF NG +    +   E+     S    T+++ P+M A E++ +  +AI    +        N DMVGHTG + A + AC+A D+ +  +++A
Sbjct:  228 DEFIQPTVVEGYAGAK-----DGDGFFCLNFRADRAREILAAIGQPDFSAFDTGRRPEWAALLGMVDYSTSHDEYMQAAYPKRQVVNTLGAWVAARGLRQFRLAETEKYPHVTFFLNGGKETPEEG--EDRFMPASPKVATYDLAPEMAAPEVSAKLVEAI-EAGYDLIVVNYANPDMVGHTGSLPAAIRACEAVDKGLGMMLEA 424          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_HALSA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Halobacterium salinarium GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.677e-16
Identity = 70/229 (30.57%), Postives = 102/229 (44.54%), Query Frame = 2
Query:   26 SHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKAL---EYEDFDKFD-RVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            +H   +AV+AV    E+ +  D+++ P  I  E G A+    DGDAVV  NFRADR   L + L      D+D        P +    M +YD     P  +  + P    T G  L  +       +E+ K+ HVT+F NG R   FD      V+ P     T++ QP M A  + +    A+             N DMVGHTGD +A + A +A D  +  ++ A
Sbjct:  208 AHHAAAAVDAVTDSYERGDT-DEFVEPTTI--EGGAALS---DGDAVVFANFRADRARQLTRLLADIHPADWDADGIETNPPAVPVVTMTEYDETFDCPVAFPAAEPT--DTLGAVLAAHDHTQLRVAESEKYAHVTYFLNGGREVAFDGETRTIVDSPDVP--TYDEQPAMSAPAVTDTVLDALAGDDPDVLVLNYANPDMVGHTGDFDAAIEAVEAVDRELGRLVPA 426          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_MYCPN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma pneumoniae GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16
Identity = 70/226 (30.97%), Postives = 105/226 (46.46%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENG---KAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIR--YAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIID 697
            F   V  V+   +Q    D++L P V    NG   K    + D D+V+ FNFR DR   ++  L   D+  +      K    +  M+ Y+G +K PS  +  P  I  T GE + HN ++    +ET K+ HVTFF++G      D   E    +PS    T+++ P+M    I ++    I   +F        N DMVGHTG+  A V   +A D  ++ IID
Sbjct:  210 FTDPVAYVQSAYDQ-KVTDEFLYPAV----NGNVDKEQFALKDHDSVIFFNFRPDRARQMSHMLFQTDYYDYTPKAGRKYNLFFVTMMNYEG-IK-PSAVVFPPETIPNTFGEVIAHNKLKQLRIAETEKYAHVTFFFDGGVE--VDLPNETKCMVPSLKVATYDLAPEMACKGITDQLLNQI--NQFDLTVLNFANPDMVGHTGNYAACVQGLEALDVQIQRIID 424          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_HELAH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter acinonychis (strain Sheeba) GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15
Identity = 65/209 (31.10%), Postives = 99/209 (47.37%), Query Frame = 2
Query:   80 NANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYL----PNSDMVGHTGDIEATVVACKAADEAVKDII 694
            N  D+++ P    +  G     + D ++ +  NFR DR   +  AL  ++F+ F R  F K+  A M  YD     P   L     I  T  E +    +     +ET K+ HVTFF NG     F +  E  V I S    T++++P+M A E+      A+L  +   GT  +     N DMVGHTG+ EA+V A +A D ++ +I+
Sbjct:  219 NITDEFIMPTCFKNYCG-----MQDDESFIFINFRNDRAREITSALGQKEFNGFKRQVFKKLHIATMTPYDKNFPYP--ILFPKESIQNTLAEVVSECNLTQSHIAETEKYAHVTFFINGGVETPFKN--ENRVLIQSPKVTTYDLKPEMSAKEVT----LAVL-EQMRLGTDLIIVNFANGDMVGHTGNFEASVKAVEAVDTSLGEIL 413          
The following BLAST results are available for this feature:
BLAST of FC920459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_ARCB41.589e-1731.372,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STRCO2.076e-1731.372,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SILST3.540e-1732.622,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELPH4.624e-1731.102,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_WOLSU7.887e-1728.852,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCGE7.887e-1727.832,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PARDP1.345e-1629.762,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HALSA6.677e-1630.572,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCPN8.720e-1630.972,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELAH1.487e-1531.102,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC32008F09EF RVDevelop1 Citrus clementina cDNA clone C32008F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920459 ID=FC920459; Name=FC920459; organism=Citrus clementina; type=EST; length=701bp
GGGATGCCCAAGTTCTTGGAGACACTCACACAAGTTTAAGAGCGCCGTTG
AAGCTGTCAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTA
CCTCCATTTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGT
AGATGGTGATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTA
TGCTTGCTAAGGCCCTTGAATATGAAGATTTTGACAAATTTGATCGAGTT
CGGTTCCCTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTT
GAAACTTCCCAGTCATTACCTTGTGTCTCCTCCAGAGATAGACAGAACAT
CTGGTGAATATTTAGTGCATAATGGTGTCCGTACTTTTGCTTGCAGTGAG
ACTGTCAAGTTTGGACATGTCACTTTCTTCTGGAATGGAAACCGCTCTGG
GTATTTCGACTCGAATTTGGAGGAATATGTGGAAATTCCTAGTGATTCTG
GAATTACTTTCAATGTACAGCCCAAGATGAAGGCTTTGGAGATTGCTGAG
AGGGCAAAGAAGGCCATCCTTAGTCGCAGGTTCCACCAGGGTACGTGTTA
CCTACCAAATAGTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAAGATATCATTGATGCA
A
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