FC920459

Overview
NameFC920459
Unique NameFC920459
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15077 contig Ccv1_Contig15077:763..1463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_HELPY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter pylori GN=gpmI PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.943e-15
Identity = 64/209 (30.62%), Postives = 97/209 (46.41%), Query Frame = 2
Query:   80 NANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYL----PNSDMVGHTGDIEATVVACKAADEAVKDII 694
            N  D+++ P    +  G     + D ++ +  NFR DR   +  AL  + F  F R  F K+  A M  YD     P   L     +  T  E +  + +     +ET K+ HVTFF NG     F +  E  V I S    T++++P+M A E+      A+L +    GT  +     N DMVGHTG+ EA+V A +A D  + +I+
Sbjct:  218 NITDEFIMPACFKNYCG-----MQDDESFIFINFRNDRAREIVSALGQKQFSGFKRQVFKKLHIATMTPYDNTFPYP--VLFPKESVQNTLAEVVSQHNLTQSHIAETEKYAHVTFFINGGVETPFKN--ENRVLIQSPKVTTYDLKPEMSAKEVT----LAVLEQ-MKLGTDLIIVNFANGDMVGHTGNFEASVKAVEAVDACLGEIL 412          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_HELPJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter pylori J99 GN=gpmI PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.943e-15
Identity = 62/209 (29.67%), Postives = 98/209 (46.89%), Query Frame = 2
Query:   80 NANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYL----PNSDMVGHTGDIEATVVACKAADEAVKDII 694
            N  D+++ P    +  G     + D ++ +  NFR DR   +  AL  ++F+ F R  F K+  A M  YD     P   L     +  T  E +  + +     +ET K+ HVTFF NG     F +  E  V I S    T++++P+M A  +      A+L  +   GT  +     N DMVGHTG+ EA++ A +A D  + +I+
Sbjct:  218 NITDEFIIPACFKNYCG-----MQDDESFIFINFRNDRAREIVSALGQKEFNSFKRQAFKKLHIATMTPYDNSFPYP--VLFPKESVQNTLAEVVSQHNLTQSHIAETEKYAHVTFFINGGVETPFKN--ENRVLIQSPKVTTYDLKPEMSAKGVT----LAVL-EQMRLGTDLIIVNFANGDMVGHTGNFEASIKAVEAVDACLGEIL 412          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_MYCGA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma gallisepticum GN=gpmI PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 60/206 (29.13%), Postives = 105/206 (50.97%), Query Frame = 2
Query:   74 QPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDF-DKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDR-TSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGI-TFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAV 682
            Q N  D+++ P    +     +  I D D+VV  NFR DR   L+  +   ++ D   ++R   + +  M+QY+G   +    +  PP+I++ T GE L +   +    +ET K+ HVTFF++G     + +  E+ V +PS   + T+++ P+M A  I ++  K  +  ++        N DMVGHTG+ EAT+   +A D  +
Sbjct:  221 QQNITDEFIVPAYNNNYKSDEI-TIQDNDSVVFANFRPDRARQLSHYVFGSNYYDHHPQLRRKNLYFVIMMQYEG---INPSAICYPPKIEKNTLGEVLKNANKKQLRIAETEKYAHVTFFFDGGVEVEYQN--EDKVLVPSRKDVKTYDLAPEMSAAAIVDQLLK--VYTKYDLTVLNFANPDMVGHTGNYEATLKGLEALDHEI 418          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_MYCMO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma mobile GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.805e-14
Identity = 62/223 (27.80%), Postives = 106/223 (47.53%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKI-RYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            F +A E +K  + Q + +D++  P +  D   K +  + D DAV+ +NFR DR   L+  L   +   +      K+  +  M++Y+G   L ++      +I    G  L  NG+     +ET K+ HVTFF++G     +++  EE + I S    +F   P+M A  I +     +   ++        N DMVGHTG+++AT+ A +  D     I+ A
Sbjct:  213 FTNASEYIKA-QYQKDISDEFFIPAINKDYLAKKLN-LKDNDAVIFYNFRPDRARQLSHLLIQSNLYNYQSKNQVKLSNFTSMMKYEG---LDTNIAYEEMKITNPLGNILAKNGLSQLRIAETQKYAHVTFFFDGGNDVLYEN--EERILIDSVKADSFADYPEMSAAGITDTLIANL--GKYDVIILNYANPDMVGHTGNLKATIKALEFLDFQYGKILKA 426          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_MYCPE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma penetrans GN=gpmI PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.392e-13
Identity = 65/223 (29.15%), Postives = 104/223 (46.64%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAK----ALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDI 691
            F + ++ V K   + N  D++L P  I D N      I D DAV+  NFR DR   ++     +  YE+ +         + YA M+ Y+G    P+  L     +  T GE + ++G+     +ET K+ HVTFF++G      D   E  + + S    T++  P M A+EI ++  + +   +F        N+DMVGHTG     V+A +A D  +  I
Sbjct:  211 FDNPIDYVNKQYSE-NIFDEFLVPARINDSNVV----IKDNDAVIHANFRPDRARQISHLFCGSTVYEEKNDHP---LKNLYYAIMMTYEGIT--PTSILFPTVVVKNTFGEVVANSGLTQLRIAETEKYAHVTFFFDGGVE--VDLKNESKILVDSKKVKTYDEVPAMSAVEITDKLIENL--DKFDVIVLNFANADMVGHTGKYNEAVLAIEALDSQLARI 419          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_MYCPU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma pulmonis GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 58/223 (26.01%), Postives = 100/223 (44.84%), Query Frame = 2
Query:   32 KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKI-RYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIID 697
            KF +  E + K   Q  +++ ++P         K V  + DGD+++ FNFR DR   L   L       F   +  KI ++  M++Y+G   + +       EI    G+     G++    +ET K+ HVT+F +G     + ++    VE  S    ++   P+M A  I +   K   ++ F        N DMVGHTG + +T+ A +  D  +  ++D
Sbjct:  214 KFDNWSEFLNKQYSQEISDEFFIPSI----NASKNVNFVKDGDSIIFFNFRPDRARQLTHLLIGSSLYDFKPKKPVKINKFCSMMKYEG---IETLIAFEEMEIKNPIGKVAEKAGLKQLRLAETQKYAHVTYFMDGGVDIEYKNSKRIMVE--SQKVRSYADHPEMSAKGITDELIKN--AKDFDLTILNYANPDMVGHTGVLTSTIKAVEILDYELSRLVD 425          
The following BLAST results are available for this feature:
BLAST of FC920459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_HELPY1.943e-1530.622,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELPJ1.943e-1529.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCGA5.652e-1529.132,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCMO2.805e-1427.802,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCPE1.392e-1329.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCPU2.223e-1126.012,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC32008F09EF RVDevelop1 Citrus clementina cDNA clone C32008F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920459 ID=FC920459; Name=FC920459; organism=Citrus clementina; type=EST; length=701bp
GGGATGCCCAAGTTCTTGGAGACACTCACACAAGTTTAAGAGCGCCGTTG
AAGCTGTCAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTA
CCTCCATTTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGT
AGATGGTGATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTA
TGCTTGCTAAGGCCCTTGAATATGAAGATTTTGACAAATTTGATCGAGTT
CGGTTCCCTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTT
GAAACTTCCCAGTCATTACCTTGTGTCTCCTCCAGAGATAGACAGAACAT
CTGGTGAATATTTAGTGCATAATGGTGTCCGTACTTTTGCTTGCAGTGAG
ACTGTCAAGTTTGGACATGTCACTTTCTTCTGGAATGGAAACCGCTCTGG
GTATTTCGACTCGAATTTGGAGGAATATGTGGAAATTCCTAGTGATTCTG
GAATTACTTTCAATGTACAGCCCAAGATGAAGGCTTTGGAGATTGCTGAG
AGGGCAAAGAAGGCCATCCTTAGTCGCAGGTTCCACCAGGGTACGTGTTA
CCTACCAAATAGTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAAGATATCATTGATGCA
A
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