FC920459

Overview
NameFC920459
Unique NameFC920459
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15077 contig Ccv1_Contig15077:763..1463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Corby) GN=gpmI PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.032e-29
Identity = 82/228 (35.96%), Postives = 119/228 (52.19%), Query Frame = 2
Query:   20 RHSHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRY-AGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            +  H+F  A  A+    +    +D+++PP +I  E+      I DGDAV+ FNFRADR   L        F  F+R   PK+ Y   M QYD  L     +   P  ++ T GE L  +G+     +ET K+ HVTFF+NG     F +  EE + +PS    T+++QP+M A E+ +    AI SR +H   C   N+DMVGHTG+ EATV A +  D+ +  +  A
Sbjct:  210 KSEHQFPDAETAIHFYYKN-KISDEFVPPTLIGKEHS-----IQDGDAVLFFNFRADRARQLTSTFLDPLFKGFERKTLPKLSYFVSMTQYDKNLITTIAF--PPVPLNNTLGEVLSSHGLSQLRIAETEKYAHVTFFFNGGCESVFTN--EERIMVPSPQVATYDLQPEMSAPELTKTLIAAINSRDYHVIICNYANADMVGHTGNFEATVQAIECLDQCMHQVWQA 427          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI1_METAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Methanosarcina acetivorans GN=gpmI1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.032e-29
Identity = 76/204 (37.25%), Postives = 109/204 (53.43%), Query Frame = 2
Query:   89 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            D+++ P VI D   K V  I D D+V+ FNFRADR   L  A   +DFD F R + PKI +  M +YD +L LP  +     E+    GE L   G+     +ET K+ HVTFF NG     ++   E+   IPS    T++++P+M A +I +   + I S ++        N DMVGHTG  EA V A +A D+ +  I++A
Sbjct:  233 DEFVKPTVITDHEEKPVATIRDKDSVIFFNFRADRARQLTWAFVKDDFDGFVREKRPKIYFVCMARYDEDLDLPVAF--PHEELKNVLGEVLSKQGLTQLRIAETEKYAHVTFFLNGGEEKRYEG--EDRCLIPSPKIATYDLKPEMSAYKITDEVVRRIQSGKYDVIVLNFANMDMVGHTGIFEAAVKAVEAVDKCIGRIVEA 432          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_BACV8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=gpmI PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.878e-29
Identity = 77/225 (34.22%), Postives = 115/225 (51.11%), Query Frame = 2
Query:   32 KFKSAVEAVKKLREQ--PNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            K K A + V+ ++E       D+++ P      N    G I +GD V+ FN+R DR   L   L  +D  +      P +++  M  YD   K   H L     +  T GEYL  NG      +ET K+ HVTFF+NG R   +D+  EE + +PS    T++++P+M A E+ ++  +AI +++F        N DMVGHTG  +A   A KA DE VKD ++A
Sbjct:  207 KGKQATDMVQAMQESYDEGVTDEFIKPI----NNSTVDGTIKEGDVVIFFNYRNDRAKELTVVLTQQDMPEQGMHTIPGLQFYCMTPYDASFK-GVHILFDKENVQNTLGEYLAANGKTQLHIAETEKYAHVTFFFNGGRETPYDA--EERILVPSPKVATYDLKPEMSAYEVKDKLVEAIKTQKFDFIVVNYANGDMVGHTGIYDAIEKAVKAIDECVKDTVEA 424          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SHEFN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella frigidimarina (strain NCIMB 400) GN=gpmI PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.982e-29
Identity = 74/222 (33.33%), Postives = 121/222 (54.50%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            + SA EA++    + + ND+++    IVD  G+A   + D D+++  NFRADR   + +     DFD F R + PKI +  +  Y  ++  P  Y  S  ++  T GE L +        SET K+ HVTFF+NG +   F+   E+ + I S    T+++QP+M + E+ ++   AI S ++    C  PN DMVGH+G+ +A V AC+A D  +  +++A
Sbjct:  215 YASAPEALEAAYAR-DENDEFVAASAIVDAQGEAA-VLSDNDSLIFMNFRADRARQITRTFVNPDFDGFKRNKTPKINFVMLTDYAADINAPVAYPSS--DLVNTLGETLQNLDKTQLRISETEKYAHVTFFFNGGKEEPFEG--EDRILIQSPKVATYDLQPEMSSTELTDKLVAAIESTKYDVIICNYPNGDMVGHSGNFDAAVKACEAVDACIGRVVEA 430          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Paris) GN=gpmI PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.982e-29
Identity = 77/206 (37.38%), Postives = 113/206 (54.85%), Query Frame = 2
Query:   86 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIR-YAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            +D+++PP +I  E+      I DGDAV+ FNFRADR   L        F  F+R   PK+  +  M QYD  L   + +   P  ++ T GE L  +G+     +ET K+ HVTFF+NG     F +  EE + +PS    T+++QP+M A E+ +    AI SR +H   C   N+DMVGHTG+ EATV A +  D+ ++ +  A
Sbjct:  231 SDEFVPPTLIGKEHS-----IQDGDAVLFFNFRADRARQLTSTFLDPLFKGFERKTLPKLSCFVSMTQYDKNLFTTTAF--PPVPLNNTLGEVLSSHGLSQLRIAETEKYAHVTFFFNGGCESVFTN--EERIMVPSPQVATYDLQPEMSAHELTKTLIAAINSRDYHVIICNYANADMVGHTGNFEATVQAIECLDQCMQQVWQA 427          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_HALOH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gpmI PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.982e-29
Identity = 81/221 (36.65%), Postives = 123/221 (55.66%), Query Frame = 2
Query:   44 AVEAVKKLREQPNAN--DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDR-VRFPK-IRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDII 694
            A +A+  L++   A+  D+++ P VI  +NG+ VG I D DAV+ +NFRADR   + KAL  E+FD+F+R    P+ + Y  M +YD E  LP  +   P EI    GE L   G +    +ET K+ HVTFF+NG     +    E+ V +PS    T++ +P+M A E+ ++  + +   ++        N DMVGHTG ++A V A +A DE +  II
Sbjct:  214 ASDAISALKQSYAADKSDEFVIPTVI-KKNGQPVGTIKDNDAVIFYNFRADRARQITKALALEEFDEFERPAEHPENLYYVCMAEYDEEFNLPVAF--PPLEIKNGFGEILSKEGFKQLRIAETEKYAHVTFFFNGGVEKKYPG--EDRVLVPSPKVATYDEKPEMSAYEVTDKLLEKLDEDKYDVIILNFANPDMVGHTGFMDAAVKAVEAVDECLGKII 429          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_BACSU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus subtilis GN=gpmI PE=1 SV=4)

HSP 1 Score: 126.716 bits (317), Expect = 1.173e-28
Identity = 72/205 (35.12%), Postives = 112/205 (54.63%), Query Frame = 2
Query:   89 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDR-VRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            D+++ P VI  ENG+ V  I DGD+V+ +NFR DR + ++     +DF  FDR   +PK  Y   L +  E  +  +    P  +D T GE L  +G++    +ET K+ HVTFF +G R   F    EE + I S    T++++P+M A E+ +   K I + +         N DMVGH+G +E T+ A +A DE + +++DA
Sbjct:  230 DEFVIPSVITKENGEPVAKIQDGDSVIFYNFRPDRAIQISNTFTNKDFRDFDRGENYPKNLYFVCLTHFSE-TVDGYVAFKPINLDNTVGEVLSQHGLKQLRIAETEKYPHVTFFMSGGREAEFPG--EERILINSPKVATYDLKPEMSAYEVKDALVKEIEADKHDAIILNFANPDMVGHSGMVEPTIKAIEAVDECLGEVVDA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_BACA2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus amyloliquefaciens (strain FZB42) GN=gpmI PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.173e-28
Identity = 72/206 (34.95%), Postives = 112/206 (54.37%), Query Frame = 2
Query:   86 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDR-VRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            +D+++ P VI  ENG+ V  I DGD+V+ +NFR DR + ++     +DF  FDR    PK  Y   L +  E  +  +    P  +D T GE L  +G++    +ET K+ HVTFF +G R   F    EE + I S    T++++P+M A E+ +   K I + +         N DMVGH+G +E T+ A +A DE + +++DA
Sbjct:  229 HDEFVIPSVITKENGEPVAKIHDGDSVIFYNFRPDRAIQISNTFTNKDFRDFDRGENHPKNLYFVCLTHFSE-SVDGYVAFKPVNLDNTVGEVLAQHGLKQLRIAETEKYPHVTFFMSGGREEEFPG--EERILINSPKVATYDLKPEMSAYEVKDALVKEIAADKHDAIILNFANPDMVGHSGMVEPTIKAIEAVDECLGEVVDA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_VIBFM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio fischeri (strain MJ11) GN=gpmI PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.532e-28
Identity = 78/222 (35.14%), Postives = 119/222 (53.60%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            F +AVE ++    +   ND+++    I  E G+    IVDGDAV+  N+RADR   + +      FD F R  FP I +  + QY  ++ L   +  +P  ++ T GE+L   G      SET K+ HVTFF+NG     F+    + V  P  +  T+++QP+M A E+ E+   AI S ++    C  PN DMVGHTG  +ATV A ++ DE +  +++A
Sbjct:  215 FATAVEGLEAAYAREE-NDEFVQATEIKAE-GEESAAIVDGDAVIFMNYRADRARQITRTF-VPSFDGFTRNVFPAIDFVMLTQYAADIPLLCAF--APASLENTYGEWLSKEGKTQLRISETEKYAHVTFFFNGGIEDEFEGEERQLVASPKVA--TYDLQPEMSAPELTEKLVAAIKSGKYDAIVCNFPNCDMVGHTGVYDATVKAVESLDECIGKVVEA 429          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_IDILO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Idiomarina loihiensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.532e-28
Identity = 83/222 (37.39%), Postives = 121/222 (54.50%), Query Frame = 2
Query:   41 SAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGML-QYDGELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            +A +AV+   E+    D+++ P VI         PI +GD+V   NFRADR   + +A   +DFD FDR     I    ML QY   L+ PS +   PPE ++   GE+L  +       SET K+ HVTFF++G R   F+   E+ V IPS    T+++QP+M + ++ +    AI S+ F    C  PN DMVGHTG+ +A V AC+A D +V  ++ A
Sbjct:  218 NATDAVENAYER-GETDEFVTPVVIGQP-----APIANGDSVFFMNFRADRAREMTQAFVDKDFDGFDRGSRADISEFVMLTQYADTLEAPSAF---PPEPLNNVLGEWLAKHDKTQLRISETEKYAHVTFFFSGGREQEFEG--EKRVLIPSPKVKTYDLQPEMSSEQLTDELVAAIESQAFDVVICNYPNGDMVGHTGNFDAAVKACEAVDHSVGRVVSA 428          
The following BLAST results are available for this feature:
BLAST of FC920459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_LEGPC4.032e-2935.962,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI1_METAC4.032e-2937.252,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACV86.878e-2934.222,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEFN8.982e-2933.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPA8.982e-2937.382,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HALOH8.982e-2936.652,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACSU1.173e-2835.122,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACA21.173e-2834.952,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBFM1.532e-2835.142,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_IDILO1.532e-2837.392,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC32008F09EF RVDevelop1 Citrus clementina cDNA clone C32008F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920459 ID=FC920459; Name=FC920459; organism=Citrus clementina; type=EST; length=701bp
GGGATGCCCAAGTTCTTGGAGACACTCACACAAGTTTAAGAGCGCCGTTG
AAGCTGTCAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTA
CCTCCATTTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGT
AGATGGTGATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTA
TGCTTGCTAAGGCCCTTGAATATGAAGATTTTGACAAATTTGATCGAGTT
CGGTTCCCTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTT
GAAACTTCCCAGTCATTACCTTGTGTCTCCTCCAGAGATAGACAGAACAT
CTGGTGAATATTTAGTGCATAATGGTGTCCGTACTTTTGCTTGCAGTGAG
ACTGTCAAGTTTGGACATGTCACTTTCTTCTGGAATGGAAACCGCTCTGG
GTATTTCGACTCGAATTTGGAGGAATATGTGGAAATTCCTAGTGATTCTG
GAATTACTTTCAATGTACAGCCCAAGATGAAGGCTTTGGAGATTGCTGAG
AGGGCAAAGAAGGCCATCCTTAGTCGCAGGTTCCACCAGGGTACGTGTTA
CCTACCAAATAGTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAAGATATCATTGATGCA
A
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