FC920459

Overview
NameFC920459
Unique NameFC920459
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15077 contig Ccv1_Contig15077:763..1463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_CLOD6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium difficile (strain 630) GN=gpmI PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27
Identity = 78/223 (34.98%), Postives = 118/223 (52.91%), Query Frame = 2
Query:   32 KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNL-EEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIID 697
            K  S  EA++   +    ND+++ P VI+ ++ K VG I + D+++ FNFR DR   + +AL  E+FD F R       +  + +YD  ++   H    P  +  T GEYL  NG      +ET K+ HVTFF+NG   G  + N  EE + IPS    T++++P+M A E+ ++A   +   +F        N DMVGHTG IEA + A +  D  V  +ID
Sbjct:  210 KANSIEEAIQNSYDD-GKNDEFIMPTVIMKDD-KPVGSIKENDSIIFFNFRPDRARQITRALVCEEFDGFKREDIKNF-FVCLTEYDITIE-NVHIAFGPQSLANTLGEYLAKNGKTQLRAAETEKYAHVTFFFNG---GVEEPNKGEERLLIPSPKVATYDLKPEMSAYELTDKALDKLGEDKFDFIVLNFANPDMVGHTGSIEAAIKAVETVDTCVGKLID 425          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SERP5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Serratia proteamaculans (strain 568) GN=gpmI PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.774e-27
Identity = 76/221 (34.39%), Postives = 117/221 (52.94%), Query Frame = 2
Query:   41 SAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGML-QYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            +AV A++   E+   ND+++ P V+    G+A   + DGDA++  NFRADR   + ++    DFD F R +        ML +Y  ++K P  Y   P  +  T GE+L+ +       SET K+ HVTFF+NG     F    E+ V I S    T+++QP+M A E+ ++   AI S ++    C  PN DMVGHTG  +A V A +  D  +  +++A
Sbjct:  218 NAVGALQAAYER-GENDEFVKPTVL-QAAGEAKAELHDGDALIFMNFRADRARQIVRSFVNADFDGFPRAKIINFGDFVMLTEYAADIKAPCAY--PPASLSNTFGEWLMKHDKTQLRISETEKYAHVTFFFNGGVEEPFTG--EDRVLINSPKVATYDLQPEMSAAELTDKLLAAIASGKYDAIICNYPNGDMVGHTGVYDAAVKAVETLDNCIAQVVEA 432          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SALPB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=gpmI PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.774e-27
Identity = 71/205 (34.63%), Postives = 109/205 (53.17%), Query Frame = 2
Query:   86 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ND+++   VI+ E G+A   + DGD ++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K    Y   P  +  T GE++  N       SET K+ HVTFF+NG     F    EE + I S    T+++QP+M + E+ E+   AI S ++    C  PN DMVGHTG +EA + A +A D  ++ +  A
Sbjct:  232 NDEFVKATVILAE-GQADAAMEDGDTLIFMNFRADRAREITRAFVNADFDGFARKKVVNLNFVMLTEYAADIKTAVAY--PPASLVNTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEEPFAG--EERILINSPKVATYDLQPEMSSAELTEKLVAAIESGKYDTIICNYPNGDMVGHTGVMEAAIKAVEALDNCIEQVTKA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_NITOC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=gpmI PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 73/219 (33.33%), Postives = 120/219 (54.79%), Query Frame = 2
Query:   29 HKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKI-RYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAV 682
            ++ +SA +A+    E+    D+++    IV  +GKA   + DGD ++  NFR+DR   + +A    DF  F+R+ +PK+ ++  + +Y  E  +P  +    P+   T G+ L   G+     +ET K+ HVTFF+NG R   F+   E+ + IPS    T++ +P+M A+E+ +   KAI S ++    C   N DMVGHTGD  ATV A +  D+ +
Sbjct:  214 YEAESAKQALAMAYER-GETDEFVQATRIVP-SGKAPVQVKDGDVIIFMNFRSDRARQITRAFIEPDFTGFERLYWPKLAQFVSLTEYSKEFDIPVAFPSEKPQ--NTFGQVLAKLGLHQLRIAETEKYAHVTFFFNGGREQPFEG--EDRILIPSPQVDTYDQKPEMSAVEVTDNIVKAIESDKYDVIICNYANPDMVGHTGDFNATVKAIETIDQCL 426          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_FRATT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. tularensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 76/223 (34.08%), Postives = 122/223 (54.71%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEID-RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            + SA+EA+++   +  +++  +P    + ++G  V  + D D+V+  NFRADR   ++ A   E FD F R +   I +  + +YD +LK    +   PPE    T GE L+ N       +ET K+ HVTFF+NG R   F+   E+ + IPS    T+++QP+M A E+ ++   AI S ++    C   NSDMVGHTG+ EA + A +  D+ +  + DA
Sbjct:  213 YDSALEALEQSYARDQSDEFVIP--TCIKKDGHLV-KVQDNDSVIFMNFRADRAREISHAFTDESFDHFPRKKHLNINFTTLTEYDSKLKCAVAF---PPEQPINTLGEVLMKNHKTQLRIAETEKYPHVTFFFNGGREEQFEG--EDRILIPSPKVATYDLQPEMSAPEVTDKLVAAINSGKYDCIVCNYANSDMVGHTGNYEAAMQAIEYLDKCIARLKDA 427          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_FRATO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=gpmI PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 76/223 (34.08%), Postives = 122/223 (54.71%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEID-RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            + SA+EA+++   +  +++  +P    + ++G  V  + D D+V+  NFRADR   ++ A   E FD F R +   I +  + +YD +LK    +   PPE    T GE L+ N       +ET K+ HVTFF+NG R   F+   E+ + IPS    T+++QP+M A E+ ++   AI S ++    C   NSDMVGHTG+ EA + A +  D+ +  + DA
Sbjct:  217 YDSALEALEQSYARDQSDEFVIP--TCIKKDGHLV-KVQDNDSVIFMNFRADRAREISHAFTDESFDHFPRKKHLNINFTTLTEYDSKLKCAVAF---PPEQPINTLGEVLMKNHKTQLRIAETEKYPHVTFFFNGGREEQFEG--EDRILIPSPKVATYDLQPEMSAPEVTDKLVAAINSGKYDCIVCNYANSDMVGHTGNYEAAMQAIEYLDKCIARLKDA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_FRATN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. novicida (strain U112) GN=gpmI PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 76/223 (34.08%), Postives = 122/223 (54.71%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEID-RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            + SA+EA+++   +  +++  +P    + ++G  V  + D D+V+  NFRADR   ++ A   E FD F R +   I +  + +YD +LK    +   PPE    T GE L+ N       +ET K+ HVTFF+NG R   F+   E+ + IPS    T+++QP+M A E+ ++   AI S ++    C   NSDMVGHTG+ EA + A +  D+ +  + DA
Sbjct:  213 YDSALEALEQSYARDQSDEFVIP--TCIKKDGHLV-KVQDNDSVIFMNFRADRAREISHAFTDESFDHFPRKKHLNINFTTLTEYDSKLKCAVAF---PPEQPINTLGEVLMKNHKTQLRIAETEKYPHVTFFFNGGREEQFEG--EDRILIPSPKVATYDLQPEMSAPEVTDKLVAAINSGKYDCIVCNYANSDMVGHTGNYEAAMQAIEYLDKCIARLKDA 427          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_FRATH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=gpmI PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 76/223 (34.08%), Postives = 122/223 (54.71%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEID-RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            + SA+EA+++   +  +++  +P    + ++G  V  + D D+V+  NFRADR   ++ A   E FD F R +   I +  + +YD +LK    +   PPE    T GE L+ N       +ET K+ HVTFF+NG R   F+   E+ + IPS    T+++QP+M A E+ ++   AI S ++    C   NSDMVGHTG+ EA + A +  D+ +  + DA
Sbjct:  213 YDSALEALEQSYARDQSDEFVIP--TCIKKDGHLV-KVQDNDSVIFMNFRADRAREISHAFTDESFDHFPRKKHLNINFTTLTEYDSKLKCAVAF---PPEQPINTLGEVLMKNHKTQLRIAETEKYPHVTFFFNGGREEQFEG--EDRILIPSPKVATYDLQPEMSAPEVTDKLVAAINSGKYDCIVCNYANSDMVGHTGNYEAAMQAIEYLDKCIARLKDA 427          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_FRATF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=gpmI PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 76/223 (34.08%), Postives = 122/223 (54.71%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEID-RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            + SA+EA+++   +  +++  +P    + ++G  V  + D D+V+  NFRADR   ++ A   E FD F R +   I +  + +YD +LK    +   PPE    T GE L+ N       +ET K+ HVTFF+NG R   F+   E+ + IPS    T+++QP+M A E+ ++   AI S ++    C   NSDMVGHTG+ EA + A +  D+ +  + DA
Sbjct:  213 YDSALEALEQSYARDQSDEFVIP--TCIKKDGHLV-KVQDNDSVIFMNFRADRAREISHAFTDESFDHFPRKKHLNINFTTLTEYDSKLKCAVAF---PPEQPINTLGEVLMKNHKTQLRIAETEKYPHVTFFFNGGREEQFEG--EDRILIPSPKVATYDLQPEMSAPEVTDKLVAAINSGKYDCIVCNYANSDMVGHTGNYEAAMQAIEYLDKCIARLKDA 427          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_FRAT1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=gpmI PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 76/223 (34.08%), Postives = 122/223 (54.71%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEID-RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            + SA+EA+++   +  +++  +P    + ++G  V  + D D+V+  NFRADR   ++ A   E FD F R +   I +  + +YD +LK    +   PPE    T GE L+ N       +ET K+ HVTFF+NG R   F+   E+ + IPS    T+++QP+M A E+ ++   AI S ++    C   NSDMVGHTG+ EA + A +  D+ +  + DA
Sbjct:  213 YDSALEALEQSYARDQSDEFVIP--TCIKKDGHLV-KVQDNDSVIFMNFRADRAREISHAFTDESFDHFPRKKHLNINFTTLTEYDSKLKCAVAF---PPEQPINTLGEVLMKNHKTQLRIAETEKYPHVTFFFNGGREEQFEG--EDRILIPSPKVATYDLQPEMSAPEVTDKLVAAINSGKYDCIVCNYANSDMVGHTGNYEAAMQAIEYLDKCIARLKDA 427          
The following BLAST results are available for this feature:
BLAST of FC920459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_CLOD62.890e-2734.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SERP53.774e-2734.392,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SALPB3.774e-2734.632,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_NITOC4.929e-2733.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRATT4.929e-2734.082,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRATO4.929e-2734.082,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRATN4.929e-2734.082,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRATH4.929e-2734.082,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRATF4.929e-2734.082,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRAT14.929e-2734.082,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC32008F09EF RVDevelop1 Citrus clementina cDNA clone C32008F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920459 ID=FC920459; Name=FC920459; organism=Citrus clementina; type=EST; length=701bp
GGGATGCCCAAGTTCTTGGAGACACTCACACAAGTTTAAGAGCGCCGTTG
AAGCTGTCAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTA
CCTCCATTTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGT
AGATGGTGATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTA
TGCTTGCTAAGGCCCTTGAATATGAAGATTTTGACAAATTTGATCGAGTT
CGGTTCCCTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTT
GAAACTTCCCAGTCATTACCTTGTGTCTCCTCCAGAGATAGACAGAACAT
CTGGTGAATATTTAGTGCATAATGGTGTCCGTACTTTTGCTTGCAGTGAG
ACTGTCAAGTTTGGACATGTCACTTTCTTCTGGAATGGAAACCGCTCTGG
GTATTTCGACTCGAATTTGGAGGAATATGTGGAAATTCCTAGTGATTCTG
GAATTACTTTCAATGTACAGCCCAAGATGAAGGCTTTGGAGATTGCTGAG
AGGGCAAAGAAGGCCATCCTTAGTCGCAGGTTCCACCAGGGTACGTGTTA
CCTACCAAATAGTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAAGATATCATTGATGCA
A
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