FC920459

Overview
NameFC920459
Unique NameFC920459
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15077 contig Ccv1_Contig15077:763..1463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_VIBCM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 74/222 (33.33%), Postives = 116/222 (52.25%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            + SAVEA++    +   ND+++    I    G+    + DGDA++  N+RADR   + +     DF  F R  FP + +  + QY  ++ L   +   P  ++ T GE+L   G      SET K+ HVTFF+NG     F     + V  P  +  T+++QP+M + E+ ++   AI S ++    C  PN DMVGHTG  EA V AC+A DE +  +++A
Sbjct:  215 YDSAVEALQAAYAREE-NDEFVKATEI-RAAGQESAAMQDGDALLFMNYRADRARQITRTF-VPDFAGFSRKAFPALDFVMLTQYAADIPLQCAF--GPASLENTYGEWLSKAGKTQLRISETEKYAHVTFFFNGGVENEFPGEERQLVASPKVA--TYDLQPEMSSKELTDKLVAAIKSGKYDAIICNYPNGDMVGHTGVYEAAVKACEAVDECIGRVVEA 429          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_VIBCH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae GN=gpmI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 74/222 (33.33%), Postives = 116/222 (52.25%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            + SAVEA++    +   ND+++    I    G+    + DGDA++  N+RADR   + +     DF  F R  FP + +  + QY  ++ L   +   P  ++ T GE+L   G      SET K+ HVTFF+NG     F     + V  P  +  T+++QP+M + E+ ++   AI S ++    C  PN DMVGHTG  EA V AC+A DE +  +++A
Sbjct:  215 YDSAVEALQAAYAREE-NDEFVKATEI-RAAGQESAAMQDGDALLFMNYRADRARQITRTF-VPDFAGFSRKAFPALDFVMLTQYAADIPLQCAF--GPASLENTYGEWLSKAGKTQLRISETEKYAHVTFFFNGGVENEFPGEERQLVASPKVA--TYDLQPEMSSKELTDKLVAAIKSGKYDAIICNYPNGDMVGHTGVYEAAVKACEAVDECIGRVVEA 429          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_VIBC3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=gpmI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 74/222 (33.33%), Postives = 116/222 (52.25%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            + SAVEA++    +   ND+++    I    G+    + DGDA++  N+RADR   + +     DF  F R  FP + +  + QY  ++ L   +   P  ++ T GE+L   G      SET K+ HVTFF+NG     F     + V  P  +  T+++QP+M + E+ ++   AI S ++    C  PN DMVGHTG  EA V AC+A DE +  +++A
Sbjct:  215 YDSAVEALQAAYAREE-NDEFVKATEI-RAAGQESAAMQDGDALLFMNYRADRARQITRTF-VPDFAGFSRKAFPALDFVMLTQYAADIPLQCAF--GPASLENTYGEWLSKAGKTQLRISETEKYAHVTFFFNGGVENEFPGEERQLVASPKVA--TYDLQPEMSSKELTDKLVAAIKSGKYDAIICNYPNGDMVGHTGVYEAAVKACEAVDECIGRVVEA 429          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SHISS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella sonnei (strain Ss046) GN=gpmI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 72/205 (35.12%), Postives = 109/205 (53.17%), Query Frame = 2
Query:   86 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ND+++   VI  E G+    + DGDA++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K    Y   P  +  T GE++  N       SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++    C  PN DMVGHTG +EA V A +A D  V+++  A
Sbjct:  232 NDEFVKATVIRAE-GQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAVAY--PPASLVNTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEESFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SHIFL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella flexneri GN=gpmI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 72/205 (35.12%), Postives = 109/205 (53.17%), Query Frame = 2
Query:   86 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ND+++   VI  E G+    + DGDA++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K    Y   P  +  T GE++  N       SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++    C  PN DMVGHTG +EA V A +A D  V+++  A
Sbjct:  232 NDEFVKATVIRAE-GQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAVAY--PPASLVNTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEESFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SHIBS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella boydii serotype 4 (strain Sb227) GN=gpmI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 72/205 (35.12%), Postives = 109/205 (53.17%), Query Frame = 2
Query:   86 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ND+++   VI  E G+    + DGDA++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K    Y   P  +  T GE++  N       SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++    C  PN DMVGHTG +EA V A +A D  V+++  A
Sbjct:  232 NDEFVKATVIRAE-GQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAVAY--PPASLVNTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEESFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_LAWIP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=gpmI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 79/216 (36.57%), Postives = 115/216 (53.24%), Query Frame = 2
Query:   47 VEAVKKLREQPNAN---DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIR-YAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAV 682
            VE   K  EQ  A+   D+++ P V+      +V  + D DAV+ FNFRADR   L  A    DF+ FDR R P +   A M  YD E  +P   L +   I +T GE +   G+     +ET K+ HVT+F++G R   F       V+ P D   T++++P+M  +E+ +R   A  S++F    C L N DMVGHTG+I+A++ A +A D  V
Sbjct:  212 VEDSVKALEQAYASGETDEFIKPRVM---GNSSVNCVQDNDAVLFFNFRADRARELVSAFILPDFNGFDRGRVPHLSGIATMTMYDKEFNIP--VLFNHENITKTLGEVVSALGLLQLRIAETEKYAHVTYFFSGGREEVFTGEERILVQSPRDVA-TYDLKPEMSVMEVTDRLLTAWNSKKFSLIVCNLANPDMVGHTGNIKASISALEAVDNCV 421          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_FRATW (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=gpmI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 74/222 (33.33%), Postives = 121/222 (54.50%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            + SA+EA+++   +  +++  +P    + ++G  V  + D D+V+  NFRADR   ++ A   E FD F R +   I +  + +YD +LK    +   P +   T GE L+ N       +ET K+ HVTFF+NG R   F+   E+ + IPS    T+++QP+M A E+ ++   AI S ++    C   NSDMVGHTG+ EA + A +  D+ +  + DA
Sbjct:  213 YDSALEALEQSYARDQSDEFVIP--TCIKKDGHLV-KVQDNDSVIFMNFRADRAREISHAFTDESFDHFPRKKHLNINFTTLTEYDSKLKCAVAF--PPKQPINTLGEVLMKNHKTQLRIAETEKYPHVTFFFNGGREEQFEG--EDRILIPSPKVATYDLQPEMSAPEVTDKLVAAINSGKYDCIVCNYANSDMVGHTGNYEAAMQAIEYLDKCIARLKDA 427          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_ECOLI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli (strain K12) GN=gpmI PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 72/205 (35.12%), Postives = 109/205 (53.17%), Query Frame = 2
Query:   86 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ND+++   VI  E G+    + DGDA++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K    Y   P  +  T GE++  N       SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++    C  PN DMVGHTG +EA V A +A D  V+++  A
Sbjct:  232 NDEFVKATVIRAE-GQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAVAY--PPASLVNTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEESFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_ECOLC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=gpmI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 72/205 (35.12%), Postives = 109/205 (53.17%), Query Frame = 2
Query:   86 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ND+++   VI  E G+    + DGDA++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K    Y   P  +  T GE++  N       SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++    C  PN DMVGHTG +EA V A +A D  V+++  A
Sbjct:  232 NDEFVKATVIRAE-GQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAVAY--PPASLVNTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEESFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKA 431          
The following BLAST results are available for this feature:
BLAST of FC920459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_VIBCM6.437e-2733.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBCH6.437e-2733.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBC36.437e-2733.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHISS6.437e-2735.122,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHIFL6.437e-2735.122,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHIBS6.437e-2735.122,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LAWIP6.437e-2736.572,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRATW6.437e-2733.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOLI6.437e-2735.122,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOLC6.437e-2735.122,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC32008F09EF RVDevelop1 Citrus clementina cDNA clone C32008F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920459 ID=FC920459; Name=FC920459; organism=Citrus clementina; type=EST; length=701bp
GGGATGCCCAAGTTCTTGGAGACACTCACACAAGTTTAAGAGCGCCGTTG
AAGCTGTCAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTA
CCTCCATTTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGT
AGATGGTGATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTA
TGCTTGCTAAGGCCCTTGAATATGAAGATTTTGACAAATTTGATCGAGTT
CGGTTCCCTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTT
GAAACTTCCCAGTCATTACCTTGTGTCTCCTCCAGAGATAGACAGAACAT
CTGGTGAATATTTAGTGCATAATGGTGTCCGTACTTTTGCTTGCAGTGAG
ACTGTCAAGTTTGGACATGTCACTTTCTTCTGGAATGGAAACCGCTCTGG
GTATTTCGACTCGAATTTGGAGGAATATGTGGAAATTCCTAGTGATTCTG
GAATTACTTTCAATGTACAGCCCAAGATGAAGGCTTTGGAGATTGCTGAG
AGGGCAAAGAAGGCCATCCTTAGTCGCAGGTTCCACCAGGGTACGTGTTA
CCTACCAAATAGTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAAGATATCATTGATGCA
A
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