FC920462

Overview
NameFC920462
Unique NameFC920462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig107 contig Ccv1_Contig107:23..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_NASOF (ATP-dependent Clp protease proteolytic subunit OS=Nasturtium officinale GN=clpP PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.182e-27
Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R+PGEG   WVD++N LYRER+ F+GQ +D E SNQ+++ M+YL    D+K +Y++IN PGG V   +A+YDTMQ ++  V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRSPGEGDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAVYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_EUCGG (ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus globulus subsp. globulus GN=clpP PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.182e-27
Identity = 58/128 (45.31%), Postives = 81/128 (63.28%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R+PGE    WVD++N LYRER++F+GQ +D E SNQ++  M+YL   +D+K +Y++IN PGG V P +AIYDTMQ ++  V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRSPGEEDASWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDNKDLYLFINSPGGWVIPGVAIYDTMQFVQPDVHTICMGLAASMGSFVLVGGEITKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_CHAVU (ATP-dependent Clp protease proteolytic subunit OS=Chara vulgaris GN=clpP PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.182e-27
Identity = 56/128 (43.75%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R PGE    WVD++N LYRER++F+GQ +D+E +NQ++  M+YL+  DDSK ++MYIN PGG V   +A++D MQ +   V T C+G A               R A+P +R+ +  P
Sbjct:    1 MPIGVPKVPFRLPGEEDAVWVDIYNRLYRERLLFLGQRVDDEIANQLIGIMMYLNGEDDSKEMFMYINSPGGSVVAGIAVFDAMQYVGPDVTTICMGMAASMGSFILMGGEMTKRIALPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMT (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus (strain NATL2A) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.182e-27
Identity = 61/128 (47.66%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIGTP V YR PG    +WVD++  L  ER++F+GQ +++  +N ++A MLYLDS D SK +Y+YIN PGG VT  LAIYDTM+ +KS + T CVG A               R A+P SRI +  P
Sbjct:    1 MPIGTPSVPYRLPGSQFERWVDIYTRLGAERILFLGQEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPGGSVTAGLAIYDTMKYVKSDLVTICVGLAASMGAFLLSAGTKGKRLALPHSRIMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_SOLTU (ATP-dependent Clp protease proteolytic subunit OS=Solanum tuberosum GN=clpP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.543e-27
Identity = 55/128 (42.97%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKVL+R PG+    WVD++N LYRER++F+GQ I  + SNQ++  M+YL   D++K +Y+++N PGG V P +AIYDTMQ ++  + T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVLFRNPGDPISSWVDVYNRLYRERLLFLGQGISTDLSNQLIGLMMYLSMEDENKELYLFVNSPGGWVIPGIAIYDTMQFVRPDIHTICIGLAASMGSFILAGGQLTKRIAFPHARVMIHEP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_SOLBU (ATP-dependent Clp protease proteolytic subunit OS=Solanum bulbocastanum GN=clpP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.543e-27
Identity = 55/128 (42.97%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKVL+R PG+    WVD++N LYRER++F+GQ I  + SNQ++  M+YL   D++K +Y+++N PGG V P +AIYDTMQ ++  + T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVLFRNPGDPISSWVDVYNRLYRERLLFLGQGISTDLSNQLIGLMMYLSMEDENKELYLFVNSPGGWVIPGIAIYDTMQFVRPDIHTICIGLAASMGSFILAGGQLTKRIAFPHARVMIHEP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_HELAN (ATP-dependent Clp protease proteolytic subunit OS=Helianthus annuus GN=clpP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.543e-27
Identity = 57/128 (44.53%), Postives = 81/128 (63.28%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R+PGE    WVD++N LYRER++F+GQ +D E SNQ++  M+YL   DD++ +Y++IN PGG V P +A+YDTMQ ++  V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRSPGEEDASWVDIYNRLYRERLLFLGQEVDSEISNQLIGLMIYLSIEDDTQDLYLFINSPGGWVIPGVALYDTMQFVQPDVHTICMGSAASMGSFILVGGEITKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_STAPU (ATP-dependent Clp protease proteolytic subunit OS=Staurastrum punctulatum GN=clpP PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.015e-27
Identity = 56/128 (43.75%), Postives = 81/128 (63.28%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG P+V +R PGE    WVD++N LYRER++F+GQN+D+E +NQ++  M+YL+  D+SK +YMYIN PGG V   +++YD MQ +   V T C+G A               R A+P +R+ +  P
Sbjct:    1 MPIGVPRVPFRLPGEEEAVWVDVYNRLYRERLLFLGQNVDDEIANQLIGIMIYLNGEDESKDMYMYINSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_ANTFO (ATP-dependent Clp protease proteolytic subunit OS=Anthoceros formosae GN=clpP PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.015e-27
Identity = 56/128 (43.75%), Postives = 82/128 (64.06%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R PGE    W+D++N LYRER++F+GQ++D+E +NQ++  M+YL+  D+SK +Y+YIN PGG V   +++YDTMQ +   V T C+G A               R A+P +RI +  P
Sbjct:    1 MPIGVPKVPFRLPGEEDAVWIDVYNRLYRERLLFLGQHVDDEIANQLIGIMMYLNGEDESKDMYLYINSPGGAVLAGISVYDTMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARIMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_AETGR (ATP-dependent Clp protease proteolytic subunit OS=Aethionema grandiflora GN=clpP PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.015e-27
Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R+PGEG   WVD++N LYRER+ F+GQ +D + SNQ+++ M+YL    D+K +Y++IN PGG V   +AIYDTMQ ++  V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRSPGEGDTSWVDIYNRLYRERLFFLGQEVDTDISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVMIHQP 128          
The following BLAST results are available for this feature:
BLAST of FC920462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_NASOF1.182e-2744.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_EUCGG1.182e-2745.31ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHAVU1.182e-2743.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_PROMT1.182e-2747.66ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_SOLTU1.543e-2742.97ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SOLBU1.543e-2742.97ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HELAN1.543e-2744.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAPU2.015e-2743.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANTFO2.015e-2743.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AETGR2.015e-2744.53ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32008G01EF RVDevelop1 Citrus clementina cDNA clone C32008G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920462 ID=FC920462; Name=FC920462; organism=Citrus clementina; type=EST; length=585bp
TGTCCGTTTCTCTTAACGCAAACTTATATCAACCTTCTCTGAGCTGTAAC
CTCAAGCTTTATTCTGGATTAAAGATTCAATCACCAAGTGTTTTTGGAAC
TGGGAAACCTAATTTGAGTGCTGAATTCTATGGCAGAGTTCATAAGAGCC
TCTACTCCGGGATTCGTAATGATAAACCAATAAGGGGACGAATTGCAATG
ATGCCGATTGGGACACCAAAAGTGCTTTATAGGACGCCTGGTGAGGGATC
TTGGCAATGGGTTGATCTATGGAATGCCCTATATCGAGAACGTGTTATTT
TCATTGGGCAAAATATAGATGAAGAATTTAGCAACCAAATATTGGCAACG
ATGTTGTATCTAGACAGTGTTGATGATTCCAAAAGGGTTTATATGTACAT
CAACGGTCCTGGTGGGGATGTTACTCCCACCTTGGCAATTTACGACACTA
TGCAGAGCTTGAAGAGTCCTGTTGGCACTCACTGTGTGGGCTTTGCCTAT
CATTTAGCAGGGTTTCTTCTAGCAGGTGGAGAATAGGGGAATCGGTCTGC
AATGCCTCTTTCGAGAATTGCTTTAGACTCTCCAG
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