FC920462

Overview
NameFC920462
Unique NameFC920462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig107 contig Ccv1_Contig107:23..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_AETCO (ATP-dependent Clp protease proteolytic subunit OS=Aethionema cordifolium GN=clpP PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.015e-27
Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R+PGEG   WVD++N LYRER+ F+GQ +D + SNQ+++ M+YL    D+K +Y++IN PGG V   +AIYDTMQ ++  V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRSPGEGDTSWVDIYNRLYRERLFFLGQEVDTDISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_SOYBN (ATP-dependent Clp protease proteolytic subunit OS=Glycine max GN=clpP PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.632e-27
Identity = 56/128 (43.75%), Postives = 82/128 (64.06%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG P+V +R+PGE    WVD++N LYRER++F+GQ +D E SNQ+++ M+YL   +++K +Y++IN PGG V P +AIYDTMQ ++  V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPRVPFRSPGEEDASWVDIYNRLYRERLLFLGQEVDSEISNQLISLMVYLSIEEENKDLYLFINSPGGWVIPGIAIYDTMQFVQPDVQTVCMGLAASMGSFLLAGGEITKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_NANDO (ATP-dependent Clp protease proteolytic subunit OS=Nandina domestica GN=clpP PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.632e-27
Identity = 58/128 (45.31%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R+PGE    WVD++N LYRER++F+GQ +D E SNQ++  M+YL   D++K +Y++IN PGG V P +AIYDTMQ +   V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRSPGEEDAVWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_GOSHI (ATP-dependent Clp protease proteolytic subunit OS=Gossypium hirsutum GN=clpP PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.632e-27
Identity = 58/128 (45.31%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R PGE    WVD++N LYRER++F+GQ +D E SNQ++  M+YL   +D+K +Y++IN PGG V P +AIYDTMQ ++  V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRNPGEEDAVWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKDLYLFINSPGGWVIPGVAIYDTMQFVQPDVHTICMGLAASMGSFLLAGGEITKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_GOSBA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium barbadense GN=clpP PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.632e-27
Identity = 58/128 (45.31%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R PGE    WVD++N LYRER++F+GQ +D E SNQ++  M+YL   +D+K +Y++IN PGG V P +AIYDTMQ ++  V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRNPGEEDAVWVDVYNRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDTKDLYLFINSPGGWVIPGVAIYDTMQFVQPDVHTICMGLAASMGSFLLAGGEITKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNSC (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain CC9605) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.632e-27
Identity = 61/128 (47.66%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIGTP V YR PG    +WVD++  L  ER++F+G  +++  +N ++A MLYLDS D SK +Y+YIN PGG VT  LAIYDT+Q +KS V T CVG A               R A+P SRI +  P
Sbjct:    1 MPIGTPSVPYRLPGSQMERWVDIYTRLGVERILFLGSEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPGGSVTAGLAIYDTIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNS9 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain CC9902) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.632e-27
Identity = 61/128 (47.66%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIGTP V YR PG    +WVD++  L  ER++F+G  +++  +N ++A MLYLDS D SK +Y+YIN PGG VT  LAIYDT+Q +KS V T CVG A               R A+P SRI +  P
Sbjct:    1 MPIGTPSVPYRLPGSQMERWVDIYTRLGVERILFLGSEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPGGSVTAGLAIYDTIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNPX (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain WH8102) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.632e-27
Identity = 61/128 (47.66%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIGTP V YR PG    +WVD++  L  ER++F+G  +++  +N ++A MLYLDS D SK +Y+YIN PGG VT  LAIYDT+Q +KS V T CVG A               R A+P SRI +  P
Sbjct:    1 MPIGTPSVPYRLPGSQMERWVDIYTRLGVERILFLGSEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPGGSVTAGLAIYDTIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMM (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus (strain MIT 9313) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.632e-27
Identity = 61/128 (47.66%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIGTP V YR PG    +WVD++  L  ER++F+GQ + +  +N ++A MLYLDS D +K +Y+YIN PGG VT  LAIYDTM+ +KS V T CVG A               R A+P SRI +  P
Sbjct:    1 MPIGTPSVPYRLPGSQMERWVDIYTRLGVERILFLGQEVSDGVANSLVAQMLYLDSEDSTKPIYLYINSPGGSVTAGLAIYDTMKYVKSDVVTICVGLAASMGAFLLTAGTKGKRLALPHSRIMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMA (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.632e-27
Identity = 61/128 (47.66%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIGTP V YR PG    +WVD++  L  ER++F+GQ + +  +N ++A MLYLDS D +K +Y+YIN PGG VT  LAIYDTM+ +KS V T CVG A               R A+P SRI +  P
Sbjct:    1 MPIGTPSVPYRLPGSQFERWVDIYTRLGAERILFLGQEVTDGVANSLVAQMLYLDSEDSTKPIYLYINSPGGSVTAGLAIYDTMKYVKSDVVTICVGLAASMGAFLLSAGTKNKRLALPHSRIMIHQP 128          
The following BLAST results are available for this feature:
BLAST of FC920462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_AETCO2.015e-2744.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SOYBN2.632e-2743.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NANDO2.632e-2745.31ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GOSHI2.632e-2745.31ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GOSBA2.632e-2745.31ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_SYNSC2.632e-2747.66ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP3_SYNS92.632e-2747.66ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP3_SYNPX2.632e-2747.66ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_PROMM2.632e-2747.66ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_PROMA2.632e-2747.66ATP-dependent Clp protease proteolytic subunit 2 O... [more]

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Properties
Property NameValue
Genbank descriptionC32008G01EF RVDevelop1 Citrus clementina cDNA clone C32008G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920462 ID=FC920462; Name=FC920462; organism=Citrus clementina; type=EST; length=585bp
TGTCCGTTTCTCTTAACGCAAACTTATATCAACCTTCTCTGAGCTGTAAC
CTCAAGCTTTATTCTGGATTAAAGATTCAATCACCAAGTGTTTTTGGAAC
TGGGAAACCTAATTTGAGTGCTGAATTCTATGGCAGAGTTCATAAGAGCC
TCTACTCCGGGATTCGTAATGATAAACCAATAAGGGGACGAATTGCAATG
ATGCCGATTGGGACACCAAAAGTGCTTTATAGGACGCCTGGTGAGGGATC
TTGGCAATGGGTTGATCTATGGAATGCCCTATATCGAGAACGTGTTATTT
TCATTGGGCAAAATATAGATGAAGAATTTAGCAACCAAATATTGGCAACG
ATGTTGTATCTAGACAGTGTTGATGATTCCAAAAGGGTTTATATGTACAT
CAACGGTCCTGGTGGGGATGTTACTCCCACCTTGGCAATTTACGACACTA
TGCAGAGCTTGAAGAGTCCTGTTGGCACTCACTGTGTGGGCTTTGCCTAT
CATTTAGCAGGGTTTCTTCTAGCAGGTGGAGAATAGGGGAATCGGTCTGC
AATGCCTCTTTCGAGAATTGCTTTAGACTCTCCAG
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