FC920462

Overview
NameFC920462
Unique NameFC920462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig107 contig Ccv1_Contig107:23..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_PHAAO (ATP-dependent Clp protease proteolytic subunit OS=Phalaenopsis aphrodite subsp. formosana GN=clpP PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 58/128 (45.31%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R PGE    WVD++N L+RER++F+GQ +D E SNQI+  M+YL   DD++ +Y++IN PGG V P +AIYDTMQ +   V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRNPGEEDAVWVDVYNRLHRERLLFLGQEVDSEISNQIVGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIYDTMQFVLPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_LIRTU (ATP-dependent Clp protease proteolytic subunit OS=Liriodendron tulipifera GN=clpP PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R+PGE    WVD++N LYRER++F+GQ +D E SNQ++  M+YL   DD++ +Y++IN PGG V P ++IYDTMQ +   V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRSPGEEDAIWVDVFNRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLYLFINSPGGWVIPGISIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_DRIGR (ATP-dependent Clp protease proteolytic subunit OS=Drimys granadensis GN=clpP PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R+PGE    WVD++N L+RER++F+GQ +D E SNQ++  M+YL   DD++ +Y++IN PGG V P +AIYDTMQ +   V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRSPGEEDAVWVDVYNRLHRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNY3 (Probable ATP-dependent Clp protease proteolytic subunit 3 OS=Synechocystis sp. (strain PCC 6803) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 58/128 (45.31%), Postives = 81/128 (63.28%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG P V +R PG    +W+D++  L +ER+IF+GQ +++  +N+I+A +LYLDS D SK +Y+YIN PGG VT  +AIYDTMQ +K+ V T CVG A               R A+P +RI +  P
Sbjct:    1 MPIGVPSVPFRLPGSQYERWIDIYTRLSQERIIFLGQEVNDSIANRIVAFLLYLDSDDPSKPIYLYINSPGGSVTAGMAIYDTMQYIKAEVITICVGLAASMGAFLLASGAPGKRLALPHARIMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_MORIN (ATP-dependent Clp protease proteolytic subunit OS=Morus indica GN=clpP PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.000e-26
Identity = 57/128 (44.53%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R+PG+    WVD+ N LYRER++F+GQ +D E SNQ++  M++L   DD+K +Y++IN PGG V P L IYDTMQ ++  V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRSPGDEDASWVDVINRLYRERLLFLGQEVDSEISNQLIGLMVFLSIEDDTKDLYLFINSPGGWVIPGLGIYDTMQFVQPDVQTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_ILLOL (ATP-dependent Clp protease proteolytic subunit OS=Illicium oligandrum GN=clpP PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.000e-26
Identity = 57/128 (44.53%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R PGE    WVD++N L+RER++F+GQ +D E SNQ++  M+YL   DD++ +Y++IN PGG V P +AIYDTMQ +   V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRNPGEEGAVWVDVYNRLHRERLLFLGQGVDSEISNQLVGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFLLAGGEITKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_PSINU (ATP-dependent Clp protease proteolytic subunit OS=Psilotum nudum GN=clpP PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.306e-26
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R PGE    WVD++N LYRER++F+GQ +D+E +NQ++  M+YL+  D+++ +Y YIN PGG V P +++YD MQ +   V T C+G A               R A+P +R+ +  P
Sbjct:    1 MPIGVPKVPFRLPGEEDAGWVDVYNRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDENRDMYSYINSPGGAVLPGISVYDAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_MARPO (ATP-dependent Clp protease proteolytic subunit OS=Marchantia polymorpha GN=clpP PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.306e-26
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R PGE    W+D++N LYRER++F+GQ +D+E +NQ++  M+YL+  D+SK +Y+YIN PGG V   +++YD MQ +   V T C+G A               R A+P +R+ +  P
Sbjct:    1 MPIGVPKVPFRLPGEEDAVWIDVYNRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDESKDMYLYINSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_CYAP8 (ATP-dependent Clp protease proteolytic subunit OS=Cyanothece sp. (strain PCC 8801) GN=clpP PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.306e-26
Identity = 58/128 (45.31%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MP+G P V YR PG    +W+D++  L +ER+IF+GQ + +  +N+I+A +LYLDS D  K +Y+YIN PGG VT  +AIYDTMQ +KS V T CVG A               R A+P +RI +  P
Sbjct:    1 MPLGVPSVPYRLPGSQYERWIDIYTRLSQERIIFLGQEVTDGLANRIVAFLLYLDSEDPGKPIYLYINSPGGSVTAGMAIYDTMQYIKSDVITICVGLAASMGAFLLASGTPGKRLALPHARIMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNJB (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. GN=clpP1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.306e-26
Identity = 61/128 (47.66%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG P+V YR PGE   QW+ L + LY+ER++FIG+ ID+  +N I+  MLYL+S D  K + MYIN PGG VT  +AIYDTM  +K  + T CVG A               R A+P SRI L  P
Sbjct:    1 MPIGVPRVPYRLPGEPYSQWISLDDRLYQERILFIGEPIDDSLANTIVGVMLYLNSQDPQKDIVMYINSPGGSVTAGMAIYDTMNHIKPDIVTVCVGQAASMGAFLLAAGTKGKRFALPHSRIMLHQP 128          
The following BLAST results are available for this feature:
BLAST of FC920462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_PHAAO7.658e-2745.31ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LIRTU7.658e-2744.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DRIGR7.658e-2744.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_SYNY37.658e-2745.31Probable ATP-dependent Clp protease proteolytic su... [more]
CLPP_MORIN1.000e-2644.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ILLOL1.000e-2644.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSINU1.306e-2642.19ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MARPO1.306e-2642.19ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CYAP81.306e-2645.31ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_SYNJB1.306e-2647.66ATP-dependent Clp protease proteolytic subunit 1 O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32008G01EF RVDevelop1 Citrus clementina cDNA clone C32008G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920462 ID=FC920462; Name=FC920462; organism=Citrus clementina; type=EST; length=585bp
TGTCCGTTTCTCTTAACGCAAACTTATATCAACCTTCTCTGAGCTGTAAC
CTCAAGCTTTATTCTGGATTAAAGATTCAATCACCAAGTGTTTTTGGAAC
TGGGAAACCTAATTTGAGTGCTGAATTCTATGGCAGAGTTCATAAGAGCC
TCTACTCCGGGATTCGTAATGATAAACCAATAAGGGGACGAATTGCAATG
ATGCCGATTGGGACACCAAAAGTGCTTTATAGGACGCCTGGTGAGGGATC
TTGGCAATGGGTTGATCTATGGAATGCCCTATATCGAGAACGTGTTATTT
TCATTGGGCAAAATATAGATGAAGAATTTAGCAACCAAATATTGGCAACG
ATGTTGTATCTAGACAGTGTTGATGATTCCAAAAGGGTTTATATGTACAT
CAACGGTCCTGGTGGGGATGTTACTCCCACCTTGGCAATTTACGACACTA
TGCAGAGCTTGAAGAGTCCTGTTGGCACTCACTGTGTGGGCTTTGCCTAT
CATTTAGCAGGGTTTCTTCTAGCAGGTGGAGAATAGGGGAATCGGTCTGC
AATGCCTCTTTCGAGAATTGCTTTAGACTCTCCAG
back to top