FC920462

Overview
NameFC920462
Unique NameFC920462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig107 contig Ccv1_Contig107:23..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_ADICA (ATP-dependent Clp protease proteolytic subunit OS=Adiantum capillus-veneris GN=clpP PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.706e-26
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R PGE    WVD++N LYRER++F+GQ +D+E +NQ++  M+YL+S D +K +Y+Y+N PGG V   +++YD MQ +   V T C+G A               R A+P +R+ +  P
Sbjct:    1 MPIGVPKVPFRLPGEEDAVWVDVYNRLYRERLLFLGQQVDDEIANQLIGIMMYLNSEDQAKDMYLYVNSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILAGGEITRRIALPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNJA (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.706e-26
Identity = 61/128 (47.66%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG P+V YR PGE   QW+ L + LY+ER++FIG+ ID+  +N I+  MLYL+S D  K + MYIN PGG VT  +AIYDTM  +K  + T CVG A               R A+P SRI L  P
Sbjct:    1 MPIGVPRVPYRLPGEPYSQWISLDDRLYQERILFIGEPIDDNLANTIVGVMLYLNSQDPQKDIVMYINSPGGSVTAGMAIYDTMNHVKPDIVTVCVGQAASMGAFLLAAGTKGKRFALPHSRIMLHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_CITSI (ATP-dependent Clp protease proteolytic subunit OS=Citrus sinensis GN=clpP PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.228e-26
Identity = 55/128 (42.97%), Postives = 81/128 (63.28%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV YR+PG+    WVD++N LYRER++F+GQ ++ + SNQ++  M+YL   +++K +Y++IN PGG V P +AIYDTMQ ++  V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPYRSPGDKHPSWVDIYNRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_ARAHI (ATP-dependent Clp protease proteolytic subunit OS=Arabis hirsuta GN=clpP PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.228e-26
Identity = 57/128 (44.53%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R+PGEG   WVD++N LYRER+ F+GQ +D E SNQ+++ M+YL    D+K +Y++IN PGG V   +AIYDTMQ ++  V T  +G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRSPGEGDTSWVDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTIGMGLAASIASFILVGGAITKRIAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_ZYGCR (ATP-dependent Clp protease proteolytic subunit OS=Zygnema circumcarinatum GN=clpP PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.801e-26
Identity = 53/128 (41.41%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R PGE    W+D++N LYR+R++F+GQ++D+E +NQ++  M+YL+  + SK +YMYIN PGG V   +++YD MQ +   V T C+G A               R A+P +R+ +  P
Sbjct:    1 MPIGVPKVPFRIPGEEDASWIDVYNRLYRDRLLFLGQDVDDEIANQLIGIMIYLNGENQSKDMYMYINSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILTGGEISKRLALPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_NYMAL (ATP-dependent Clp protease proteolytic subunit OS=Nymphaea alba GN=clpP PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.483e-26
Identity = 55/128 (42.97%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R+PGE    WVD++N L+RER++F+GQ +D E SNQ++  M+YL   D+++ +Y++IN PGG V P +AIYD MQ +   V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRSPGEEDAVWVDIYNRLHRERLLFLGQGVDSEISNQLVGLMVYLSMEDNTRDLYLFINSPGGWVIPGIAIYDAMQIVPPDVHTICMGLAASMGSFILVGGEFTKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_NUPAD (ATP-dependent Clp protease proteolytic subunit OS=Nuphar advena GN=clpP PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.483e-26
Identity = 55/128 (42.97%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R+PGE    WVD++N L+RER++F+GQ +D E SNQ++  M+YL   D+++ +Y++IN PGG V P +AIYD MQ +   V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRSPGEEDAVWVDIYNRLHRERLLFLGQGVDSEISNQLVGLMVYLSMEDNTRDLYLFINSPGGWVIPGIAIYDAMQIVPPDVHTICMGLAASMGSFILVGGEFTKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=clpP PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.483e-26
Identity = 54/128 (42.19%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MP+G PKV +R PGE    WVDL+N LYR+R++F+GQ+++ E SNQI+  M+YL   D +K  Y++IN PGG V P + ++DTMQ +   V T C+G A               R A P +R+ +  P
Sbjct:    1 MPVGVPKVPFRLPGEEDASWVDLYNRLYRQRLLFLGQDVNNEISNQIMGLMVYLSIEDGTKDQYLFINSPGGSVIPGVGLFDTMQFVSPDVHTICIGLAASMGSFILVGGEITKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_AMBTC (ATP-dependent Clp protease proteolytic subunit OS=Amborella trichopoda GN=clpP PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.483e-26
Identity = 55/128 (42.97%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MP+G PKV +R+PGE    WVD++N L+RER++F+GQ ++ E SNQI+  M+YL   DD++ +Y++IN PGG V P +AIYD MQ +   V T C+G A               R A P +R+ +  P
Sbjct:    1 MPVGVPKVPFRSPGEEDATWVDIYNRLHRERLLFLGQEVEGEISNQIVGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIYDAMQFVPPDVHTICMGLAASMGSFVLAGGEITKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_PIPCE (ATP-dependent Clp protease proteolytic subunit OS=Piper cenocladum GN=clpP PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.444e-25
Identity = 56/128 (43.75%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R+PGE    WVD++N L+RER++F+GQ +D E SNQI+  M+YL   D ++ +Y++IN PGG V P +AIYDTMQ +   V T C+G A               R A P + + +  P
Sbjct:    1 MPIGVPKVPFRSPGEEDAAWVDVYNRLHRERLLFLGQEVDSEISNQIVGLMVYLSIEDGTRDLYLFINSPGGWVIPGIAIYDTMQFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHAWVMIHQP 128          
The following BLAST results are available for this feature:
BLAST of FC920462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_ADICA1.706e-2642.19ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_SYNJA1.706e-2647.66ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_CITSI2.228e-2642.97ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ARAHI2.228e-2644.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ZYGCR3.801e-2641.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NYMAL6.483e-2642.97ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NUPAD6.483e-2642.97ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CUCSA6.483e-2642.19ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AMBTC6.483e-2642.97ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PIPCE1.444e-2543.75ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32008G01EF RVDevelop1 Citrus clementina cDNA clone C32008G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920462 ID=FC920462; Name=FC920462; organism=Citrus clementina; type=EST; length=585bp
TGTCCGTTTCTCTTAACGCAAACTTATATCAACCTTCTCTGAGCTGTAAC
CTCAAGCTTTATTCTGGATTAAAGATTCAATCACCAAGTGTTTTTGGAAC
TGGGAAACCTAATTTGAGTGCTGAATTCTATGGCAGAGTTCATAAGAGCC
TCTACTCCGGGATTCGTAATGATAAACCAATAAGGGGACGAATTGCAATG
ATGCCGATTGGGACACCAAAAGTGCTTTATAGGACGCCTGGTGAGGGATC
TTGGCAATGGGTTGATCTATGGAATGCCCTATATCGAGAACGTGTTATTT
TCATTGGGCAAAATATAGATGAAGAATTTAGCAACCAAATATTGGCAACG
ATGTTGTATCTAGACAGTGTTGATGATTCCAAAAGGGTTTATATGTACAT
CAACGGTCCTGGTGGGGATGTTACTCCCACCTTGGCAATTTACGACACTA
TGCAGAGCTTGAAGAGTCCTGTTGGCACTCACTGTGTGGGCTTTGCCTAT
CATTTAGCAGGGTTTCTTCTAGCAGGTGGAGAATAGGGGAATCGGTCTGC
AATGCCTCTTTCGAGAATTGCTTTAGACTCTCCAG
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