FC920467

Overview
NameFC920467
Unique NameFC920467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14149 contig Ccv1_Contig14149:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL9_ORYSJ (Probable metal-nicotianamine transporter YSL9 OS=Oryza sativa subsp. japonica GN=YSL9 PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.965e-47
Identity = 98/226 (43.36%), Postives = 135/226 (59.73%), Query Frame = 2
Query:   62 EVEVSEPLIEKIAAVN---DEEEEADQPI------PEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELAGKASQCLGKYLS 712
            E+ V+ P  E++A ++   D EE A          P W++Q+T RGLVAS  +G ++ +I  KLNLT G++P+LNV+A L+ F +++ WT  L++LGF+ +PFTRQENTV+QTC VACY              +++RTY++ G D  GN     K PG+ WM                PLRKVMI+DYKLTYPSGTATA+LIN FHT  G  +A +      KY +
Sbjct:   17 ELVVAHPREEEMAGLDGGGDAEEGATHARGGGGAPPPWREQLTARGLVASLAVGAMYSVIVMKLNLTTGLVPTLNVSAALIAFVVLRGWTQALARLGFAARPFTRQENTVVQTCAVACYSIAVGGGFGSYLLGLNKRTYEMAGEDTEGNVPGSYKEPGIAWMTGFLLAVSFVGLLALVPLRKVMIIDYKLTYPSGTATAVLINGFHTPHGDAMAKQQVNGFTKYFA 242          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL8_ARATH (Probable metal-nicotianamine transporter YSL8 OS=Arabidopsis thaliana GN=YSL8 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 7.466e-47
Identity = 111/235 (47.23%), Postives = 132/235 (56.17%), Query Frame = 2
Query:   26 EKPKRNLQIMGTEVEVSEPLIEKIAAVNDEEEEA------DQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELAGKASQCLGKYLS 712
            E+ KRN+     + E  E          +E+EE+       + +P WK Q+TIR  V S  +  LF  I  KLNLT GIIPSLNV+AGLLGFF VK+WT  L K G   +PFTRQENTVIQTCVVA                M  R      AD  G+ A  VK+P LGWMI               PLRK+MI+D+KL YPSGTATA LINSFHT  GA+LA K  + LGK+ S
Sbjct:   29 ERLKRNINATPYQREEEEE-------DREEQEESVEGIFESREVPSWKKQLTIRAFVVSFALSILFSFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKMLHKSGLLKQPFTRQENTVIQTCVVASSGIAFSGGFGTYLFAMSHRI-----ADQSGDVARGVKDPSLGWMIAFLFVVSFLGLFSVVPLRKIMIIDFKLPYPSGTATAHLINSFHTPQGAKLAKKQVRVLGKFFS 251          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL12_ORYSJ (Probable metal-nicotianamine transporter YSL12 OS=Oryza sativa subsp. japonica GN=YSL12 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 7.466e-47
Identity = 98/198 (49.49%), Postives = 122/198 (61.62%), Query Frame = 2
Query:  113 EEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELAGKASQCLGKY 706
            E    D+ +P W++Q+T+R  V S  +  +F II  KLNLT GIIPSLNV+AGLLGFF V+ WT+ + ++G   +PFTRQENTVIQTCVVA Y              M E    +       N A++VKNP +GWMI               PLRK+MI+DYKLTYPSGTATA LIN FHT  GA+LA K  + LGK+
Sbjct:   57 ERAFVDRAVPSWREQLTVRAFVVSFFLSIMFSIIVMKLNLTTGIIPSLNVSAGLLGFFFVRLWTAAIERVGLLRQPFTRQENTVIQTCVVAAYGIAFSGGFGTYLFGMSE---TIAKQATEANNAQNVKNPHIGWMIGFLFLVSFIGLLALVPLRKIMIVDYKLTYPSGTATAYLINGFHTPEGAKLAKKQVKELGKF 251          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL7_ARATH (Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.750e-47
Identity = 104/199 (52.26%), Postives = 124/199 (62.31%), Query Frame = 2
Query:  119 EEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXM-DERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELAGKASQCLGKYLS 712
            EE+++  P W+ Q+T R L+ S I+  LF  +  KLNLT GIIPSLN++AGLLGFF VKSWT  L+K GF  +PFTRQENTVIQTCVVA                M D    Q   A+ P N    +KNP LGWMI               PLRK+MI+D+KLTYPSGTATA LINSFHT  GA+LA K  + LGK+ S
Sbjct:   31 EESNEIPPPWQKQLTFRALIVSFILAILFTFVVMKLNLTTGIIPSLNISAGLLGFFFVKSWTKILNKAGFLKQPFTRQENTVIQTCVVASSGIAFSGGFGSYLFGMSDVVAKQSAEANTPLN----IKNPHLGWMIGFLFVVSFLGLFSVVPLRKIMIVDFKLTYPSGTATAHLINSFHTPQGAKLAKKQVRALGKFFS 225          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL16_ORYSJ (Probable metal-nicotianamine transporter YSL16 OS=Oryza sativa subsp. japonica GN=YSL16 PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.837e-46
Identity = 93/203 (45.81%), Postives = 126/203 (62.07%), Query Frame = 2
Query:   74 SEPLIEKIAAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELAGK 682
            SEP +   AA  + E      +P W++Q+T RG+VA+ ++G ++ +I  KL+LT G+IP+LNV+A LL F  ++ WT  L +LG + +PFTRQENTVIQTC VACY              ++++TY+L GA  PGN     K PG+GWM                PLRKV+++DYKLTYPSGTATA+LIN FHT  G + A K
Sbjct:   26 SEPAL---AAAREAER-----VPPWREQVTARGMVAALLIGVVYTVIVMKLSLTTGLIPTLNVSAALLAFLALRGWTHALDRLGIASRPFTRQENTVIQTCAVACYTIGYGGGFGSFLLGLNKKTYELSGASTPGNVPGSYKEPGIGWMTGFLLSTSFVGLLTLLPLRKVLVIDYKLTYPSGTATAVLINGFHTPQGDKNAKK 220          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL15_ORYSJ (Iron-phytosiderophore transporter YSL15 OS=Oryza sativa subsp. japonica GN=YSL15 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.320e-46
Identity = 89/198 (44.95%), Postives = 127/198 (64.14%), Query Frame = 2
Query:   92 KIAAVNDEEEEAD-------QPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTG 664
            +I +++DE+ EAD       + +  W++Q+T RG+VA+A++G +F +I  K+ LT G++P+LN++A LL F  ++ WT  L +LGFS +PFTRQENTV+QTC VACY              +++RTY+L G + PGN     K PG+GWM+               PLRK +++DYKLTYPSGTATA+LIN FHT  G
Sbjct:   14 EIGSLHDEDAEADPARAREMERLQPWREQVTARGVVAAALIGFVFSVIVMKIALTTGLVPTLNISAALLAFLALRGWTRALERLGFSPRPFTRQENTVVQTCAVACYTIAFGGGFGSTLLGLNKRTYELAG-NSPGNVPGSYKEPGIGWMVGLLLAISFAGNLSLIPLRKALVVDYKLTYPSGTATAVLINGFHTAQG 210          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL2_ARATH (Metal-nicotianamine transporter YSL2 OS=Arabidopsis thaliana GN=YSL2 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.408e-45
Identity = 89/191 (46.60%), Postives = 119/191 (62.30%), Query Frame = 2
Query:  110 DEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELAGK 682
            DE  ++ +P P W+ QIT+R +VAS ++G ++ +I  KLNLT G++P+LN+++ LL F  +KSWT  L K G +  PFTRQENT+ QTC VACY              ++ RTY+  G +  GN    +K PG+GWM                PLRKVMI+DYKLTYPSGTATA+LIN FHT+ G + A K
Sbjct:   16 DEFIDSRKP-PPWRKQITVRAIVASLLIGIVYSVICLKLNLTTGLVPNLNISSALLAFVFLKSWTKVLQKAGIATTPFTRQENTIAQTCAVACYSISLAGGFASYLLGLNRRTYEETGVNTEGNNPRGIKEPGVGWMTSFLFVTSFIGLVVLVPLRKVMIIDYKLTYPSGTATAVLINGFHTSKGDKTAKK 205          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL1_ARATH (Metal-nicotianamine transporter YSL1 OS=Arabidopsis thaliana GN=YSL1 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.137e-45
Identity = 100/226 (44.25%), Postives = 129/226 (57.08%), Query Frame = 2
Query:   35 KRNLQIMGTEVEVSEPLIEKIAAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELAGKASQCLGKYLS 712
            +R ++  G E E +  L  +    + EEE + + I  W  QIT+RG+  S ++G +F +I  KLNLT GI+P+LN +A LL F  V++WT  L K GF  KPFTRQENT+IQT  VACY              ++ +TY L G +  GN  + VK PGLGWM                PLRKVMI+D KLTYPSG ATA+LIN FHT   A+ A K  +   KY S
Sbjct:    6 RRIMKREGEEEEDNNQLSLQEEEPDTEEEMSGRTIEPWTKQITVRGVFVSIVIGVVFSVIAQKLNLTTGIVPNLNSSAALLAFVFVQTWTKILKKSGFVAKPFTRQENTMIQTSAVACYGIAVGGGFASYLLGLNHKTYVLSGVNLEGNSPKSVKEPGLGWMTAYLFVVCFIGLFVLIPLRKVMIVDLKLTYPSGLATAVLINGFHTQGDAQ-AKKQVRGFMKYFS 230          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YS1_MAIZE (Iron-phytosiderophore transporter yellow stripe 1 OS=Zea mays GN=YS1 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.009e-43
Identity = 88/205 (42.93%), Postives = 127/205 (61.95%), Query Frame = 2
Query:   62 EVEVSEPLIEKI----AAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTG 664
            E+E  EP  E +    AA  ++E E ++ +  W++Q+T+RG+VA+ ++G ++ +I  K+ LT G++P+LNV+A L+ F  ++ WT  L +LG + +PFTRQEN VI+TC VACY              +D++TY+L GA  P N     K+PG GWM                PLRKV+++DYKLTYPSGTATA+LIN FHT  G
Sbjct:   17 EIERHEPAPEDMESDPAAAREKELELER-VQSWREQVTLRGVVAALLIGFMYSVIVMKIALTTGLVPTLNVSAALMAFLALRGWTRVLERLGVAHRPFTRQENCVIETCAVACYTIAFGGGFGSTLLGLDKKTYELAGAS-PANVPGSYKDPGFGWMAGFVAAISFAGLLSLIPLRKVLVIDYKLTYPSGTATAVLINGFHTKQG 219          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL2_ORYSJ (Metal-nicotianamine transporter YSL2 OS=Oryza sativa subsp. japonica GN=YSL2 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.104e-41
Identity = 91/220 (41.36%), Postives = 123/220 (55.91%), Query Frame = 2
Query:   65 VEVSEPLIEKIAAVNDEEEE-----ADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKL---------GFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELAGK 682
            +E + P IE+  A + E +      A + +P W++Q+T RG+VA+ ++G ++ +I  KL LT GIIP+LNV+A LL F  ++ WT   + L             +PFTRQENTV+QTC VACY              ++ +TY+L G   PGN     K PG+GWM                PLRK +I+DYKLTYPSGTATA+LIN FHT  G   A K
Sbjct:    1 MEAAAPEIERCDAGDVESDHDGAAAAAERVPPWREQVTARGMVAALLIGFVYTVIIMKLALTTGIIPTLNVSAALLAFLALRGWTRAPALLLPGGGAASSSSRRRPFTRQENTVVQTCAVACYTMGFGGGFGSSLLALNRKTYELAGVSTPGNSPGSYKEPGVGWMTGFLFAISFVGLLNLLPLRKALIIDYKLTYPSGTATAVLINGFHTPQGENSAKK 220          
The following BLAST results are available for this feature:
BLAST of FC920467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
YSL9_ORYSJ1.965e-4743.36Probable metal-nicotianamine transporter YSL9 OS=O... [more]
YSL8_ARATH7.466e-4747.23Probable metal-nicotianamine transporter YSL8 OS=A... [more]
YSL12_ORYSJ7.466e-4749.49Probable metal-nicotianamine transporter YSL12 OS=... [more]
YSL7_ARATH9.750e-4752.26Probable metal-nicotianamine transporter YSL7 OS=A... [more]
YSL16_ORYSJ2.837e-4645.81Probable metal-nicotianamine transporter YSL16 OS=... [more]
YSL15_ORYSJ6.320e-4644.95Iron-phytosiderophore transporter YSL15 OS=Oryza s... [more]
YSL2_ARATH1.408e-4546.60Metal-nicotianamine transporter YSL2 OS=Arabidopsi... [more]
YSL1_ARATH3.137e-4544.25Metal-nicotianamine transporter YSL1 OS=Arabidopsi... [more]
YS1_MAIZE1.009e-4342.93Iron-phytosiderophore transporter yellow stripe 1 ... [more]
YSL2_ORYSJ2.104e-4141.36Metal-nicotianamine transporter YSL2 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionC32008G07EF RVDevelop1 Citrus clementina cDNA clone C32008G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920467 ID=FC920467; Name=FC920467; organism=Citrus clementina; type=EST; length=712bp
GTCGAACAGTCGTAACATTTAGAAGGAGAAACCAAAACGGAATCTTCAAA
TCATGGGAACCGAAGTAGAAGTGTCAGAGCCGTTGATTGAGAAGATCGCG
GCCGTTAATGACGAGGAGGAGGAAGCGGATCAGCCGATTCCGGAATGGAA
GGATCAGATAACGATCAGAGGGCTGGTGGCGAGCGCGATTATGGGGACGC
TCTTCTGCATCATCACGCACAAGCTCAATCTGACGGTCGGAATTATTCCG
TCGCTCAACGTTGCCGCGGGACTGTTAGGCTTCTTCCTCGTGAAGTCGTG
GACGAGCTTCTTGTCGAAGCTAGGGTTTTCGATTAAGCCTTTTACGAGAC
AAGAGAACACCGTCATTCAAACTTGTGTGGTAGCTTGTTATGGCCTCGCT
TTTAGCGGGGGATTCGGTTCATCTTTGCTTGCAATGGATGAAAGAACATA
TCAACTAATTGGTGCTGATTACCCTGGTAACCGGGCAGAAGATGTCAAGA
ACCCAGGGTTGGGTTGGATGATTGGTTTTGTAGTAGTTGTCAGTTTCCTT
GGACTTTTCAGTCTTGTTCCACTCCGTAAGGTTATGATCTTGGATTATAA
ACTTACATATCCCAGTGGAACAGCCACGGCAATGTTAATTAATAGCTTTC
ACACCAACACTGGAGCAGAGCTTGCCGGGAAAGCAAGTCAGTGCCTTGGA
AAATATTTGAGC
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