FC920467

Overview
NameFC920467
Unique NameFC920467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14149 contig Ccv1_Contig14149:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL8_ORYSJ (Probable metal-nicotianamine transporter YSL8 OS=Oryza sativa subsp. japonica GN=YSL8 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.364e-40
Identity = 93/203 (45.81%), Postives = 122/203 (60.10%), Query Frame = 2
Query:   62 EVEVSEPLIEKIAAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAE-DVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGA 667
            E EV+  +I    +V+ E+    + +P W +QIT+R LV SA++GT    I  KLNLT GI+PSLNV+AGLL FFL+K+WTS L + G   KPFTRQENTV+QTCV++C               M ++  +  G D    +   +V+ P LG +I               PLRK+MI+ YKLTYPSG+ATA LINSFHT  GA
Sbjct:   10 EAEVTREVI----SVSTEKAFEGKALPAWSEQITVRSLVVSAVLGTFLSFIVMKLNLTSGIVPSLNVSAGLLAFFLMKTWTSALERCGVFPKPFTRQENTVVQTCVISCSSIAFSGGFGTYILGMSKKIAE--GFDEAEAKTSINVEEPSLGRLIAFLFLVSFVGLFSIVPLRKIMIISYKLTYPSGSATAHLINSFHTPQGA 206          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL18_ORYSJ (Probable metal-nicotianamine transporter YSL18 OS=Oryza sativa subsp. japonica GN=YSL18 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.253e-35
Identity = 79/182 (43.41%), Postives = 104/182 (57.14%), Query Frame = 2
Query:  131 QPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELA 676
            QP+P W +Q+T+R +VAS  +G     +   L  T GIIPSLN++AGLLGFFL+K+WT  L +LG   +PFTRQEN V+QTCVVAC               MD +T +        + +  V  P  G M+               P+RK MI+ ++LT+PSG+ATA LINSFHT  GA  A
Sbjct:   20 QPVPPWTEQVTLRAVVASVALGVALSSVMMNLVFTSGIIPSLNISAGLLGFFLLKAWTRLLDQLGSPGRPFTRQENAVVQTCVVACASMTYSGGFGSYLLAMDRKTAEKTSTG--DDSSASVSEPEFGRMMAFFFLVSFVGLLAIVPMRKTMIIRHRLTFPSGSATAHLINSFHTPHGARQA 199          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL1_ORYSJ (Probable metal-nicotianamine transporter YSL1 OS=Oryza sativa subsp. japonica GN=YSL1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.013e-33
Identity = 71/184 (38.59%), Postives = 100/184 (54.35%), Query Frame = 2
Query:  125 ADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELA 676
            A QP P W  Q+T+R +  S ++GTLF  +  +  LT G +PS N++A LL FF++KSWT  +++ G + +PFTRQEN V+QTCV++C               M+E   +  G    G    +V     G ++               PLR  MI+DYKL YPSG+A A ++NSFHT  GA  A
Sbjct:   21 AGQPPPPWWQQVTVRAVAVSVVLGTLFSFMAMRTGLTAGFVPSFNMSASLLSFFIIKSWTRLMARCGVASQPFTRQENVVVQTCVISCATLSIYGGFTSYLLAMNETVAKAAGG---GTDGRNVYTLHTGKIVAFLFLVTFSSLFCTLPLRNTMIVDYKLIYPSGSAVAGIVNSFHTPKGATKA 201          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL17_ORYSJ (Probable metal-nicotianamine transporter YSL17 OS=Oryza sativa subsp. japonica GN=YSL17 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.722e-30
Identity = 75/203 (36.95%), Postives = 108/203 (53.20%), Query Frame = 2
Query:  104 VNDEEEEAD------------QPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELA 676
            V+D+ E+A             +P+P   + +T R    S ++G +  ++  +LNLT G++PSL V AGLLGFFL + W   L  +G S  PFTRQENT+IQ  VV+C               M  ++       + G+   +V+ P +G +I               PLRK+MI+ ++LT+PSGTATA LINSFHT  GA+ A
Sbjct:   13 VDDDREDASSVASSTERAFEGEPLPSLGETVTARSAAVSGVLGAVVSVVAMRLNLTSGLLPSLGVPAGLLGFFLARVWIRALDVVGVSHLPFTRQENTLIQIAVVSCSTIAFSGGFGTYILGMSGKS---ANEGHIGSHGRNVEEPNIGRVIAFLFLVNFSGLFIIVPLRKMMIIRHRLTFPSGTATAHLINSFHTPHGAKQA 212          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL7_ORYSJ (Probable metal-nicotianamine transporter YSL7 OS=Oryza sativa subsp. japonica GN=YSL7 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.581e-27
Identity = 75/209 (35.89%), Postives = 103/209 (49.28%), Query Frame = 2
Query:   77 EPLIEKIAAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELAGKASQCLGK 703
            EP+ +    ++ E     +P+P   + IT R +V S I+     I+  K+ L+ G IPS ++ AGLLGF + ++    L     +  PFTRQENT+IQTCVVAC               M ++      A    N   +V+ P    MI               P RKVMI+ ++LT+PSGTATA LINSFHT  G + A K    L K
Sbjct:    2 EPVNDFQEGISTEHAFEAEPVPSLSETITPRSMVVSFILSVTLSIVAMKVTLSSGFIPSFSIPAGLLGFCVSRASIRILDYFAVAQLPFTRQENTIIQTCVVACTSITFTGGFGTYILAMGKK-----AAVGDVNAQNNVEEPSFARMITFLFLISFAGMFIIMPFRKVMIIRHRLTFPSGTATAHLINSFHTPQGVKQARKQVTLLFK 205          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL3_ORYSJ (Probable metal-nicotianamine transporter YSL3 OS=Oryza sativa subsp. japonica GN=YSL3 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25
Identity = 63/196 (32.14%), Postives = 100/196 (51.02%), Query Frame = 2
Query:   89 EKIAAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELA 676
            + ++A + E     QP PE+++ +T R +  + ++  + C +  ++ +T GI+P+LN+ A +L FFL+K     L   GF + PFTRQEN  + TC++ C               M     + + AD P  R + + +  +G  I               P  +VMI+DYKL +P+GT  A LINSFHT  GA +A
Sbjct:    7 DPMSATSVEAVFEKQPSPEFRELVTPRAMAVAVVLSVVICFVGMRIQMTAGIVPALNMPASILSFFLLKWLIRLLQSCGFPMLPFTRQENMFLLTCIITCLNLALTSGFATNIIGMTSTVARSL-ADDPDPR-DIMDHVPIGKWIVYLFLVGMTGVLINVPFNQVMIIDYKLLFPTGTVIAQLINSFHTPEGAYVA 200          
BLAST of FC920467 vs. ExPASy Swiss-Prot
Match: YSL4_ORYSJ (Probable metal-nicotianamine transporter YSL4 OS=Oryza sativa subsp. japonica GN=YSL4 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19
Identity = 54/205 (26.34%), Postives = 96/205 (46.83%), Query Frame = 2
Query:   62 EVEVSEPLIEKIAAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYXXXXXXXXXXXXXXMDERTYQLIGADYPGNRAEDVKNPGLGWMIXXXXXXXXXXXXXXXPLRKVMILDYKLTYPSGTATAMLINSFHTNTGAELA 676
            +  + +P +  + A  ++      P+P +   +T R +  + ++G +FC +  ++ +  G +P+LN+   +L FFL+K     L K   ++ PFTRQEN  + TCV+ C               M     + +  D   +  + +     G +I               PL ++MI+DY+L +P+G+    LINSFHT  GA +A
Sbjct:    2 DASIGDPRLTSVEAAFEKN-----PLPGFSWLVTPRAMAVAVLLGIVFCFVGMRIQMMTGFVPALNMPVTVLSFFLLKVLARQLQKWRLTVVPFTRQENMFLITCVITCLNLAITGGFATALTGMGTIVAKTLADDL--DPRDIIDYIPTGKLIIYFFLIGMAGVLSNIPLNQIMIIDYQLLFPTGSVIGHLINSFHTPEGAYIA 199          
The following BLAST results are available for this feature:
BLAST of FC920467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
YSL8_ORYSJ1.364e-4045.81Probable metal-nicotianamine transporter YSL8 OS=O... [more]
YSL18_ORYSJ2.253e-3543.41Probable metal-nicotianamine transporter YSL18 OS=... [more]
YSL1_ORYSJ8.013e-3338.59Probable metal-nicotianamine transporter YSL1 OS=O... [more]
YSL17_ORYSJ3.722e-3036.95Probable metal-nicotianamine transporter YSL17 OS=... [more]
YSL7_ORYSJ8.581e-2735.89Probable metal-nicotianamine transporter YSL7 OS=O... [more]
YSL3_ORYSJ8.032e-2532.14Probable metal-nicotianamine transporter YSL3 OS=O... [more]
YSL4_ORYSJ2.264e-1926.34Probable metal-nicotianamine transporter YSL4 OS=O... [more]

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Properties
Property NameValue
Genbank descriptionC32008G07EF RVDevelop1 Citrus clementina cDNA clone C32008G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920467 ID=FC920467; Name=FC920467; organism=Citrus clementina; type=EST; length=712bp
GTCGAACAGTCGTAACATTTAGAAGGAGAAACCAAAACGGAATCTTCAAA
TCATGGGAACCGAAGTAGAAGTGTCAGAGCCGTTGATTGAGAAGATCGCG
GCCGTTAATGACGAGGAGGAGGAAGCGGATCAGCCGATTCCGGAATGGAA
GGATCAGATAACGATCAGAGGGCTGGTGGCGAGCGCGATTATGGGGACGC
TCTTCTGCATCATCACGCACAAGCTCAATCTGACGGTCGGAATTATTCCG
TCGCTCAACGTTGCCGCGGGACTGTTAGGCTTCTTCCTCGTGAAGTCGTG
GACGAGCTTCTTGTCGAAGCTAGGGTTTTCGATTAAGCCTTTTACGAGAC
AAGAGAACACCGTCATTCAAACTTGTGTGGTAGCTTGTTATGGCCTCGCT
TTTAGCGGGGGATTCGGTTCATCTTTGCTTGCAATGGATGAAAGAACATA
TCAACTAATTGGTGCTGATTACCCTGGTAACCGGGCAGAAGATGTCAAGA
ACCCAGGGTTGGGTTGGATGATTGGTTTTGTAGTAGTTGTCAGTTTCCTT
GGACTTTTCAGTCTTGTTCCACTCCGTAAGGTTATGATCTTGGATTATAA
ACTTACATATCCCAGTGGAACAGCCACGGCAATGTTAATTAATAGCTTTC
ACACCAACACTGGAGCAGAGCTTGCCGGGAAAGCAAGTCAGTGCCTTGGA
AAATATTTGAGC
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