FC920479

Overview
NameFC920479
Unique NameFC920479
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig675 contig Ccv1_Contig675:73..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_BACST (Superoxide dismutase [Mn] OS=Bacillus stearothermophilus GN=sodA PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 45/133 (33.83%), Postives = 59/133 (44.36%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            F+L   PYP +ALEPH+ K+T+  H  KHH  YV NLN  + G      KSLE+++  + +  +       NN     NH  FW                  I + FGS              +FGSGWAWLV
Sbjct:    3 FELPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSNLEALPESIRTAVRNNGGGHANHSLFWTILSPNGGGEPTGELADAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLV 135          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_BACCA (Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 45/133 (33.83%), Postives = 59/133 (44.36%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            F+L   PYP +ALEPH+ K+T+  H  KHH  YV NLN  + G      KSLE+++  + +  +       NN     NH  FW                  I + FGS              +FGSGWAWLV
Sbjct:    3 FELPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSNLEALPESIRTAVRNNGGGHANHSLFWTILSPNGGGEPTGELAEAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLV 135          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM1_BACCR (Superoxide dismutase [Mn] 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.618e-14
Identity = 49/131 (37.40%), Postives = 60/131 (45.80%), Query Frame = 1
Query:  217 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAF-----NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            PY  +ALEPH  K+T+  H  KHH  Y+ NLN  + G  EL D KS+E++V    N  ++  A      NN     NH FFW                  IE  FGS             T+FGSGWAWLV
Sbjct:   25 PYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELAD-KSVEELVA---NLNEVPEAIRTAVRNNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLV 151          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_STAXY (Superoxide dismutase [Mn/Fe] OS=Staphylococcus xylosus GN=sodA PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.420e-14
Identity = 46/133 (34.59%), Postives = 62/133 (46.62%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            F+L   PY  +ALEPH+ + T+E H GKHH  YV  LN  + GT+L + KS+E++V  + S  +       NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPNLPYGFDALEPHIDQQTMEIHHGKHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPENIQTAVRNNGGGHLNHSLFWELLTPNSEEKGTVVDK--IKEQWGSLDAFKEEFADKAAARFGSGWAWLV 132          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODF_HELPY (Superoxide dismutase [Fe] OS=Helicobacter pylori GN=sodB PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.420e-14
Identity = 46/129 (35.66%), Postives = 62/129 (48.06%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 585
            F L+  P+  +++   +S    +FH GKHH+ YV+NLN  I GT+  +  SL D++  S         FNNAAQ +NHDF+W                 L E+DFGS             T FGSGW W
Sbjct:    2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDF-EKSSLFDILTKSSG-----GVFNNAAQIYNHDFYWDCLSPKATALSDELKGAL-EKDFGSLEKFKEDFIKSATTLFGSGWNW 123          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODF_CAMJJ (Superoxide dismutase [Fe] OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=sodB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.420e-14
Identity = 49/138 (35.51%), Postives = 63/138 (45.65%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL-------IERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            F+L+  PY  NA    +S +T  +H GKHH  YV NLN  I  TE   GK L  ++  S N G     FNNAAQ +NHDF++                 +       +E++FGS               FGSGW WLV
Sbjct:    2 FELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDTEFA-GKDLVSIIKTS-NGG----VFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLV 133          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODF_CAMJE (Superoxide dismutase [Fe] OS=Campylobacter jejuni GN=sodB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.420e-14
Identity = 49/138 (35.51%), Postives = 63/138 (45.65%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL-------IERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            F+L+  PY  NA    +S +T  +H GKHH  YV NLN  I  TE   GK L  ++  S N G     FNNAAQ +NHDF++                 +       +E++FGS               FGSGW WLV
Sbjct:    2 FELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDTEFA-GKDLVSIIKTS-NGG----VFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLV 133          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_BACHD (Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 45/133 (33.83%), Postives = 57/133 (42.86%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            F+L   PYP NALEPH+ + T+  H GKHH  YV  LN  + G      KS+E +V  + +  +       NN     NH  FW                  I  +FGS              +FGSGWAWLV
Sbjct:    3 FELPKLPYPANALEPHIDEATMNIHHGKHHNTYVTKLNAALEGHSALAEKSIEALVSDLDAVPENIRTAVRNNGGGHANHTLFWQILSPNGGGAPTGELADAINAEFGSFDQFKEKFADAAANRFGSGWAWLV 135          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_STAEP (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis GN=sodA PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.833e-14
Identity = 46/133 (34.59%), Postives = 61/133 (45.86%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            F+L   PY  +ALEPH+ K+T+E H  KHH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHIDKETMEIHHDKHHNTYVTKLNAVVEGTDL-EAKSIEEIVANLDSVPSDIQTAVRNNGGGHLNHSLFWELLTPNSEEKGEVVEK--IKEQWGSLDEFKKEFADKAAARFGSGWAWLV 132          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_STAS1 (Superoxide dismutase [Mn/Fe] OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sodA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 46/133 (34.59%), Postives = 61/133 (45.86%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            F+L   PY  +ALEPH+ K T+E H  KHH  YV  LN  + GT+L + KS+E++V  + S  +       NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPNLPYGFDALEPHIDKQTMEIHHDKHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPENIQTAVRNNGGGHLNHSLFWELLTPNSEEKGTVVDK--IKEQWGSLDAFKEEFADKAAARFGSGWAWLV 132          
The following BLAST results are available for this feature:
BLAST of FC920479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SODM_BACST1.535e-1433.83Superoxide dismutase [Mn] OS=Bacillus stearothermo... [more]
SODM_BACCA1.535e-1433.83Superoxide dismutase [Mn] OS=Bacillus caldotenax G... [more]
SODM1_BACCR2.618e-1437.40Superoxide dismutase [Mn] 1 OS=Bacillus cereus (st... [more]
SODM_STAXY3.420e-1434.59Superoxide dismutase [Mn/Fe] OS=Staphylococcus xyl... [more]
SODF_HELPY3.420e-1435.66Superoxide dismutase [Fe] OS=Helicobacter pylori G... [more]
SODF_CAMJJ3.420e-1435.51Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODF_CAMJE3.420e-1435.51Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODM_BACHD4.466e-1433.83Superoxide dismutase [Mn] OS=Bacillus halodurans G... [more]
SODM_STAEP5.833e-1434.59Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STAS17.618e-1434.59Superoxide dismutase [Mn/Fe] OS=Staphylococcus sap... [more]

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Properties
Property NameValue
Genbank descriptionC32008H07EF RVDevelop1 Citrus clementina cDNA clone C32008H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920479 ID=FC920479; Name=FC920479; organism=Citrus clementina; type=EST; length=675bp
GGTTCAGGCTTTGCTTTCATCTGCTATAACCAAAGCTGTAATATATAAGG
CATGGCATCGGCGGCAGCAGCAGCTTCATCTGCTCCAACAATTTGGTTGA
CTGGCCAAGGACTTGGTGGAAGGAGTACGCGATTGCCTTTTCATTGGAGA
AACAAAAAGATGGAGCAGAGAAAGACTGGTGGCCGAATTTCTGCGAAATT
TGATTTGAAGCCTCCACCTTATCCACTGAATGCTCTGGAGCCACATATGA
GCAAGGACACCCTGGAATTCCACTGGGGAAAGCACCACAGAGCTTATGTG
GATAACCTCAACAAGCAAATTGTTGGAACTGAGCTTGGTGATGGAAAGTC
ATTGGAAGATGTCGTTATTGCTTCTTACAACAAGGGTGACTTGCTTCCAG
CTTTCAATAATGCTGCACAGGCGTGGAACCATGACTTCTTCTGGGAATCC
ATGAAACCGGGTGGTGGCGGAAAGCCGTCTGGTGAACTTCTAGGACTGAT
TGAAAGGGATTTTGGTTCTTTTGAAAAATTTCTTGAGGAATTCAAGGCGG
CTGCAGCCACTCAGTTTGGTTCTGGTTGGGCCTGGCTTGTACCAAAGCCA
ATAATAGAGCTGATGTGGCTAATGCGGTGAATCCTCTTCCATCGGAGAAG
GACAAGAGCCTTTTAGTGGTGAAGA
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