FC920479

Overview
NameFC920479
Unique NameFC920479
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig675 contig Ccv1_Contig675:73..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM1_STAAC (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain COL) GN=sodA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.299e-13
Identity = 45/133 (33.83%), Postives = 60/133 (45.11%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            F+L   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM1_STAAB (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.299e-13
Identity = 45/133 (33.83%), Postives = 60/133 (45.11%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            F+L   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM1_STAA8 (Superoxide dismutase [Mn] 1 OS=Staphylococcus aureus (strain NCTC 8325) GN=sodA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.299e-13
Identity = 45/133 (33.83%), Postives = 60/133 (45.11%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            F+L   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM1_STAA3 (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain USA300) GN=sodA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.299e-13
Identity = 45/133 (33.83%), Postives = 60/133 (45.11%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            F+L   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODF_HELPJ (Superoxide dismutase [Fe] OS=Helicobacter pylori J99 GN=sodB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 45/129 (34.88%), Postives = 61/129 (47.29%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAW 585
            F L+  P+  +++   +S    +FH GKHH+ YV+NLN  I GT+    KS    ++   + G     FNNAAQ +NHDF+W                 L E+DFGS             T FGSGW W
Sbjct:    2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDF--EKSSLFAILTKSSGG----VFNNAAQIYNHDFYWDCLSPKATALSDELKEAL-EKDFGSLEKFKEDFIKSATTLFGSGWNW 123          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_SALTY (Superoxide dismutase [Mn] OS=Salmonella typhimurium GN=sodA PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 49/139 (35.25%), Postives = 61/139 (43.88%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVPK 597
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D +PA       NNA    NH  FW                  IERDFGS             T+FGSGWAWLV K
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENLPEFASLPVEELI----TKLDQVPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLK 135          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_SHIFL (Superoxide dismutase [Mn] OS=Shigella flexneri GN=sodA PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 49/139 (35.25%), Postives = 61/139 (43.88%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVPK 597
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D LPA       NNA    NH  FW                  IERDFGS             ++FGSGWAWLV K
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI----TKLDQLPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLK 135          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_SALTI (Superoxide dismutase [Mn] OS=Salmonella typhi GN=sodA PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 49/139 (35.25%), Postives = 61/139 (43.88%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVPK 597
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D +PA       NNA    NH  FW                  IERDFGS             T+FGSGWAWLV K
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENLPEFADLPVEELI----TKLDQVPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLK 135          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_ECOLI (Superoxide dismutase [Mn] OS=Escherichia coli (strain K12) GN=sodA PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 49/139 (35.25%), Postives = 61/139 (43.88%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVPK 597
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D LPA       NNA    NH  FW                  IERDFGS             ++FGSGWAWLV K
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI----TKLDQLPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLK 135          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_ECO57 (Superoxide dismutase [Mn] OS=Escherichia coli O157:H7 GN=sodA PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 49/139 (35.25%), Postives = 61/139 (43.88%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVPK 597
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D LPA       NNA    NH  FW                  IERDFGS             ++FGSGWAWLV K
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI----TKLDQLPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLK 135          
The following BLAST results are available for this feature:
BLAST of FC920479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SODM1_STAAC1.299e-1333.83Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAB1.299e-1333.83Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAA81.299e-1333.83Superoxide dismutase [Mn] 1 OS=Staphylococcus aure... [more]
SODM1_STAA31.299e-1333.83Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODF_HELPJ1.697e-1334.88Superoxide dismutase [Fe] OS=Helicobacter pylori J... [more]
SODM_SALTY2.216e-1335.25Superoxide dismutase [Mn] OS=Salmonella typhimuriu... [more]
SODM_SHIFL2.895e-1335.25Superoxide dismutase [Mn] OS=Shigella flexneri GN=... [more]
SODM_SALTI2.895e-1335.25Superoxide dismutase [Mn] OS=Salmonella typhi GN=s... [more]
SODM_ECOLI2.895e-1335.25Superoxide dismutase [Mn] OS=Escherichia coli (str... [more]
SODM_ECO572.895e-1335.25Superoxide dismutase [Mn] OS=Escherichia coli O157... [more]

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Properties
Property NameValue
Genbank descriptionC32008H07EF RVDevelop1 Citrus clementina cDNA clone C32008H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920479 ID=FC920479; Name=FC920479; organism=Citrus clementina; type=EST; length=675bp
GGTTCAGGCTTTGCTTTCATCTGCTATAACCAAAGCTGTAATATATAAGG
CATGGCATCGGCGGCAGCAGCAGCTTCATCTGCTCCAACAATTTGGTTGA
CTGGCCAAGGACTTGGTGGAAGGAGTACGCGATTGCCTTTTCATTGGAGA
AACAAAAAGATGGAGCAGAGAAAGACTGGTGGCCGAATTTCTGCGAAATT
TGATTTGAAGCCTCCACCTTATCCACTGAATGCTCTGGAGCCACATATGA
GCAAGGACACCCTGGAATTCCACTGGGGAAAGCACCACAGAGCTTATGTG
GATAACCTCAACAAGCAAATTGTTGGAACTGAGCTTGGTGATGGAAAGTC
ATTGGAAGATGTCGTTATTGCTTCTTACAACAAGGGTGACTTGCTTCCAG
CTTTCAATAATGCTGCACAGGCGTGGAACCATGACTTCTTCTGGGAATCC
ATGAAACCGGGTGGTGGCGGAAAGCCGTCTGGTGAACTTCTAGGACTGAT
TGAAAGGGATTTTGGTTCTTTTGAAAAATTTCTTGAGGAATTCAAGGCGG
CTGCAGCCACTCAGTTTGGTTCTGGTTGGGCCTGGCTTGTACCAAAGCCA
ATAATAGAGCTGATGTGGCTAATGCGGTGAATCCTCTTCCATCGGAGAAG
GACAAGAGCCTTTTAGTGGTGAAGA
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