FC920479

Overview
NameFC920479
Unique NameFC920479
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig675 contig Ccv1_Contig675:73..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM2_STAA3 (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain USA300) GN=sodM PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 43/133 (32.33%), Postives = 60/133 (45.11%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            F L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLV 132          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_THET8 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=sodA PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11
Identity = 44/140 (31.43%), Postives = 56/140 (40.00%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVPKPIIEL 612
            F L    YP  ALEPH+   T+E H  KHH AYV NLN  +       G  +E ++  +A+  +       NN     NH  FW                  I+  FG               +FGSGWAWLV  P  +L
Sbjct:    5 FKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKDPFGKL 144          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_THET2 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=sodA PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11
Identity = 44/140 (31.43%), Postives = 56/140 (40.00%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVPKPIIEL 612
            F L    YP  ALEPH+   T+E H  KHH AYV NLN  +       G  +E ++  +A+  +       NN     NH  FW                  I+  FG               +FGSGWAWLV  P  +L
Sbjct:    5 FKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKDPFGKL 144          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_ENTFA (Superoxide dismutase [Fe] OS=Enterococcus faecalis GN=sodA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 48/135 (35.56%), Postives = 62/135 (45.93%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQI-VGTELGDGKSLEDVVIASYN--KGDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            + L   PY  +ALEP++  +T+  H  KHH  YV NLN  I    ELG+ KS+E+ +I+  N    D+  A  NN     NH FFW                  I+  FGS              +FGSGWAWLV
Sbjct:    3 YTLPELPYAYDALEPYIDVETMHLHHDKHHNTYVTNLNAAIEKHPELGE-KSVEN-LISDMNAIPEDIRTAVRNNGGGHANHTFFWEIMAPNAGGQPTGAIKEAIDETFGSFDEMKAAFKTAATGRFGSGWAWLV 135          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_THEAQ (Superoxide dismutase [Mn] OS=Thermus aquaticus GN=sodA PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 43/140 (30.71%), Postives = 54/140 (38.57%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVPKPIIEL 612
            F L    YP  ALEPH+   T+E H  KHH AYV NLN  +       G  +E ++  + +          NN     NH  FW                  I+  FG               +FGSGWAWLV  P  +L
Sbjct:    5 FKLPELGYPYEALEPHIDARTMEIHHQKHHGAYVTNLNAALEKYPYLQGAEVETLLRHLTALPADIQAAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFAALKEKLTQAAMGRFGSGWAWLVKDPFGKL 144          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_LISIV (Superoxide dismutase [Mn] OS=Listeria ivanovii GN=sodA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 42/133 (31.58%), Postives = 57/133 (42.86%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            ++L   PY  +ALEP+  K+T+E H+ KHH  YV  LN+ + G  EL      E V        ++  A  N+     NH  FW                  IE +FG+              +FGSGWAWLV
Sbjct:    3 YELPKLPYTYDALEPNFDKETMEIHYTKHHNIYVTKLNEAVSGHAELASKPGEELVANLDSVPEEIRGAVRNHGGGHANHTLFWSSLSPNGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLV 135          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_PASMU (Superoxide dismutase [Mn] OS=Pasteurella multocida GN=sodA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 45/126 (35.71%), Postives = 54/126 (42.86%), Query Frame = 1
Query:  220 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            Y  +ALEPH    T+E H  KHH+AYV+N N  +    EL  G   + +   +    D L A  NN     NH  FW                  I RDFGS             T+FGSGWAWLV
Sbjct:   10 YAYDALEPHFDAMTMEIHHSKHHQAYVNNANAALENLPELAQGCPGQLLTKLAEVPADKLTAIRNNVGGHLNHSLFW--KSLKKGTTLQGALKDAIVRDFGSVEAFQAEFEKAAATRFGSGWAWLV 133          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_LACLM (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=sodA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 44/136 (32.35%), Postives = 59/136 (43.38%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            F L   PY  NALEP   + T+  H GKHH+ YV+NLN  I      D  SLE+++  +++  +       NN     NH  FW                 +   I ++FGS              +FGSGWAWLV
Sbjct:    3 FTLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEKHNELDDLSLEELLTDLSAIPEDIRTAVRNNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLV 138          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_LACLA (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. lactis GN=sodA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 44/136 (32.35%), Postives = 59/136 (43.38%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            F L   PY  NALEP   + T+  H GKHH+ YV+NLN  I      D  SLE+++  +++  +       NN     NH  FW                 +   I ++FGS              +FGSGWAWLV
Sbjct:    3 FTLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEKHNELDDLSLEELLTDLSAIPEDIRTAVRNNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLV 138          
The following BLAST results are available for this feature:
BLAST of FC920479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SODM2_STAA31.216e-1132.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM_THET81.588e-1131.43Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_THET21.588e-1131.43Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_ENTFA2.709e-1135.56Superoxide dismutase [Fe] OS=Enterococcus faecalis... [more]
SODM_THEAQ3.539e-1130.71Superoxide dismutase [Mn] OS=Thermus aquaticus GN=... [more]
SODM_LISIV3.539e-1131.58Superoxide dismutase [Mn] OS=Listeria ivanovii GN=... [more]
SODM_PASMU6.036e-1135.71Superoxide dismutase [Mn] OS=Pasteurella multocida... [more]
SODM_LACLM6.036e-1132.35Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_LACLA6.036e-1132.35Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]

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Properties
Property NameValue
Genbank descriptionC32008H07EF RVDevelop1 Citrus clementina cDNA clone C32008H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920479 ID=FC920479; Name=FC920479; organism=Citrus clementina; type=EST; length=675bp
GGTTCAGGCTTTGCTTTCATCTGCTATAACCAAAGCTGTAATATATAAGG
CATGGCATCGGCGGCAGCAGCAGCTTCATCTGCTCCAACAATTTGGTTGA
CTGGCCAAGGACTTGGTGGAAGGAGTACGCGATTGCCTTTTCATTGGAGA
AACAAAAAGATGGAGCAGAGAAAGACTGGTGGCCGAATTTCTGCGAAATT
TGATTTGAAGCCTCCACCTTATCCACTGAATGCTCTGGAGCCACATATGA
GCAAGGACACCCTGGAATTCCACTGGGGAAAGCACCACAGAGCTTATGTG
GATAACCTCAACAAGCAAATTGTTGGAACTGAGCTTGGTGATGGAAAGTC
ATTGGAAGATGTCGTTATTGCTTCTTACAACAAGGGTGACTTGCTTCCAG
CTTTCAATAATGCTGCACAGGCGTGGAACCATGACTTCTTCTGGGAATCC
ATGAAACCGGGTGGTGGCGGAAAGCCGTCTGGTGAACTTCTAGGACTGAT
TGAAAGGGATTTTGGTTCTTTTGAAAAATTTCTTGAGGAATTCAAGGCGG
CTGCAGCCACTCAGTTTGGTTCTGGTTGGGCCTGGCTTGTACCAAAGCCA
ATAATAGAGCTGATGTGGCTAATGCGGTGAATCCTCTTCCATCGGAGAAG
GACAAGAGCCTTTTAGTGGTGAAGA
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