FC920481

Overview
NameFC920481
Unique NameFC920481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RFBB_ECOLX (dTDP-glucose 4,6-dehydratase OS=Escherichia coli GN=rfbB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 62/233 (26.61%), Postives = 105/233 (45.06%), Query Frame = 2
Query:   20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLVHPQDES------YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQL 646
            M+ILVTGGAGFIGS +V  ++ N ++ V+ VD   + G+ ++L +     R+     D+ +           ++D + HLA  +        P   I+TN++GT  +L  A          K+   R    ST EVYGD L HP + +       +         S Y   K  ++ L+  + R +G+   ++   N YGP    +  +++   I  A+ G+ L +   G Q+
Sbjct:    1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLAEISDSERYSFENADICDAEGDGLYFGQHQLDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSGLDDEKKKNFRFHHISTDEVYGD-LPHPDEVNSNETLQLFTETTAYAPSSPYSASKASSDHLVRAWKRTYGLPTIVSNCSNNYGPYHFPE--KLIPLVILNALEGKALPIYGKGDQI 230          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RMLB_STRMU (dTDP-glucose 4,6-dehydratase OS=Streptococcus mutans GN=rmlB PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 60/197 (30.46%), Postives = 93/197 (47.21%), Query Frame = 2
Query:   26 ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR----------SCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID 565
            I+VTGGAGFIGS+ V  +  N  +  V V+D   + G++ NL + +G  R EL+  D+ +  L++      D I H A  +       +P   I TN +GT  +L  A++   R    ST EVYGD    P  E   G+    G +          S Y   K  ++ ++  + R  G++  I+   N YGP  +I+
Sbjct:    7 IIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNRANLEEILGD-RVELVVGDIADSELVDKLAAKADAIVHYAAESHNDNSLKDPSPFIYTNFVGTYILLEAARKYDIRFHHVSTDEVYGD---LPLREDLPGHGEGPGEKFTAETKYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE 199          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RFBB_RHISN (Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium sp. (strain NGR234) GN=NGR_a03580 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 64/227 (28.19%), Postives = 104/227 (45.81%), Query Frame = 2
Query:   20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----------RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQL 646
            MRILVTGGAGFIGS LV + + +   EV+ VD   + G+  +L+   G   +  +R D+ + + I       + D + HLA  +            ++TNV GT  ML  A++  +          ++L  ST EVYG       D   +  V+P    S Y   K  ++     + R +G+ + I+   N YGP    +  +++   I  A+  +PL V   G+ +
Sbjct:    1 MRILVTGGAGFIGSALV-RYLVSINAEVLNVDKLTYAGNLASLKPVEGLRNYRFLRADICDRVAINEAFETFQPDYVIHLAAESHVDRSITGADDFVQTNVNGTFTMLETARQYWSNLSQNRKAFFKMLHVSTDEVYGS----LGDRGQFEEVSPYDPSSPYSASKAASDHFATAWQRTYGLPVVISNCSNNYGPFHFPE--KLIPLMILNALDRKPLPVYGTGSNI 220          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_WIGBR (Bifunctional polymyxin resistance protein arnA OS=Wigglesworthia glossinidia brevipalpis GN=arnA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 62/231 (26.84%), Postives = 105/231 (45.45%), Query Frame = 2
Query:    2 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-WIGHPRFELIRHDVTE------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            K F++  +IL+ G  GFIG H+ + L++    ++  +D      K+NL K +IG+ +F  I+ D+ +        + + D I  L   A P+ Y  NP+K  K +    L ++    +   RI+  STSEVYG    D           G +     R  Y   K++ + +++ Y  ++ +   I R FN  GP ++        + RV +  I   I G P+T+   G Q
Sbjct:  309 KSFKNLKKILILGVNGFIGYHITNLLLKYNNYKIYGID-----IKNNLVKSFIGNEKFCFIKGDIKQYYNWVKKKIKKCDIILPLIAIARPMQYIKNPLKVFKIDFEENLKIIRYCVKYKKRIIFPSTSEVYGMCKDDYFDEENSNLVTGAIK--NQRWIYSSSKQLLDRIIWAYGVKNNLNFTIFRPFNWIGPGLDDFKIAEKQNARVTTQIIFNLINGLPVTIVNNGNQ 532          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: TGDS_MOUSE (dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 63/217 (29.03%), Postives = 94/217 (43.32%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNY-FTGSKDNLRKWIGHPRFELIRHDVTE----PLLIEVDQI---YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+LVTGGAGFI SH++  L+E+  + +IV +D   +  S  NL        ++ I+ D+ +     LL EV++I    H A             +    NV GT  ++  A   G  + +  ST EVYG  L    DES     +P    + Y   K  AE  +  Y  ++   + I R  N YGP    +  RV+  FI+         +   G Q
Sbjct:   19 RVLVTGGAGFIASHVIVSLVEDYPDYMIVNLDKLDYCASLKNLEPVSNKQNYKFIQGDICDSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVNAAYEAGVEKFIYVSTDEVYGGSLDQEFDES-----SPKQPTNPYASSKAAAECFVQSYWERYKFPVVITRSSNVYGPHQYPE--RVIPKFISLLQHNRKCCIHGSGLQ 228          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: TGDS_HUMAN (dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 61/217 (28.11%), Postives = 92/217 (42.40%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNY-FTGSKDNLRKWIGHPRFELIRHDVTE----PLLIE---VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+LVTGGAGFI SH++  L+E+  N +I+ +D   +  S  NL        ++ I+ D+ +     LL E   +D + H A             +    NV GT  ++  A      + +  ST EVYG  L    DES     +P    + Y   K  AE  +  Y  Q+   + I R  N YGP    +  +V+  FI+         +   G Q
Sbjct:   19 RVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKFIYVSTDEVYGGSLDKEFDES-----SPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGSGLQ 228          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: TGDS_BOVIN (dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 61/217 (28.11%), Postives = 92/217 (42.40%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNY-FTGSKDNLRKWIGHPRFELIRHDVTE----PLLIE---VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+LVTGGAGFI SH++  L+E+  N +I+ +D   +  S  NL        ++ I+ D+ +     LL E   +D + H A             +    NV GT  ++  A      + +  ST EVYG  L    DES     +P    + Y   K  AE  +  Y  Q+   + I R  N YGP    +  +V+  FI+         +   G Q
Sbjct:   19 RVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKFIYVSTDEVYGGSLDKEFDES-----SPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGTGLQ 228          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: GALE_LACHE (UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 56/213 (26.29%), Postives = 98/213 (46.01%), Query Frame = 2
Query:   20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL-TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDG-------RVVSNFIAQAIRGE 613
            M++LV GGAG+IGSH V +L++ E N+V+V+D  +TG +  +      P+ +  + D+ +  L+       ++D + H A  +        P+K    NV G +++L        + L+ +S++  YG P   P  E       P+   + Y E K + E +M    +  GI+    R FN  G   +   G        ++ N +  AI G+
Sbjct:    1 MKVLVIGGAGYIGSHAVRELVK-EGNDVLVLDALYTGHRKAV-----DPKAKFYQGDIEDTFLVSKILRDEKIDAVMHFAAYSLVPESVKKPLKYYDNNVTGMISLLQAMNDANVKYLVFSSSAATYGIPKKLPITED-----TPLNPINPYGETKMMMEKIMAWADKADGIKYTALRYFNVAGASSDGSIGEDHAPETHLIPNILKSAISGD 202          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: SPSJ_BACSU (Spore coat polysaccharide biosynthesis protein spsJ OS=Bacillus subtilis GN=spsJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 55/226 (24.34%), Postives = 96/226 (42.48%), Query Frame = 2
Query:   29 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNML-GLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQLVVSVMSQTWLMA 682
            L+TGGAGFIG      ++      + V+D   +    + + K   + RF  ++ D++    I+       D + H A  +            I TNV+GT  +   + K    +++  ST EVYGD      D+  +    P+   + Y   K  ++ L+  Y + H +   I R  N YGP  + +  +++   I  A +G P+ +   G Q+      + WL A
Sbjct:    6 LITGGAGFIGLTFTKLMLRETDARITVLDKLTYASHPEEMEKLKQNSRFRFVKGDISVQEDIDRAFDETYDGVIHFAAESHVDRSISQAEPFITTNVMGTYRLAEAVLKGKAKKLIHISTDEVYGD---LKADDPAFTETTPLSPNNPYSASKASSDLLVLSYVKTHKLPAIITRCSNNYGPYQHSE--KMIPTIIRHAKQGLPVPLYGDGLQI------RDWLFA 220          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARAE4_ARATH (Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsis thaliana GN=At5g44480 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 62/235 (26.38%), Postives = 102/235 (43.40%), Query Frame = 2
Query:   26 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----KDNLRKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPA---SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHP-QDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG----------PRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQLVVS 655
            +LVTGGAG+IGSH   +L+  +   V +VDN   G+    K   + +    R + I  D+ +PL +E        D + H A  A       Y       I +N +G L    +A+    +++ +ST   YG+P   P  +++    +NP      Y + K++AE ++ D+ +   + + I R FN  G          PR  + +   +S     A RG    +Q  GT    S
Sbjct:   97 VLVTGGAGYIGSHAALRLL-RDSYRVTIVDNLSRGNLGAVKTLQQLFPQTGRLQFIYADLGDPLAVEKIFSENAFDAVMHFAAVAYVGESTLYPLKYYHNITSNTLGVLE--AMARHKVKKLIYSSTCATYGEPEKMPITEDTPQVPINP------YGKAKKMAEDMILDFSKNSDMAVMILRYFNVIGSDPGGRLGEAPRPELREQGRISGACFDAARGFIPGLQVKGTDYKTS 322          
The following BLAST results are available for this feature:
BLAST of FC920481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
RFBB_ECOLX1.960e-1226.61dTDP-glucose 4,6-dehydratase OS=Escherichia coli G... [more]
RMLB_STRMU3.343e-1230.46dTDP-glucose 4,6-dehydratase OS=Streptococcus muta... [more]
RFBB_RHISN4.367e-1228.19Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium... [more]
ARNA_WIGBR4.367e-1226.84Bifunctional polymyxin resistance protein arnA OS=... [more]
TGDS_MOUSE1.271e-1129.03dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=... [more]
TGDS_HUMAN3.697e-1128.11dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=... [more]
TGDS_BOVIN3.697e-1128.11dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TG... [more]
GALE_LACHE3.697e-1126.29UDP-glucose 4-epimerase OS=Lactobacillus helveticu... [more]
SPSJ_BACSU4.828e-1124.34Spore coat polysaccharide biosynthesis protein sps... [more]
ARAE4_ARATH4.828e-1126.38Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC32008H11EF RVDevelop1 Citrus clementina cDNA clone C32008H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920481 ID=FC920481; Name=FC920481; organism=Citrus clementina; type=EST; length=693bp
CAAATTTTTTCAGTCCAACATGAGGATTCTGGTTACTGGAGGAGCTGGAT
TTATCGGCTCTCACCTTGTGGACAAGTTGATGGAAAATGAAAAGAACGAG
GTGATTGTAGTTGATAACTACTTCACTGGCTCAAAGGATAACCTAAGGAA
ATGGATTGGTCACCCAAGATTTGAGCTTATTCGTCATGATGTGACTGAGC
CATTGTTGATCGAGGTTGATCAAATTTATCACCTTGCTTGTCCTGCCTCC
CCAATCTTCTACAAATACAACCCTGTAAAGACTATAAAGACAAATGTGAT
TGGTACATTGAACATGCTGGGGCTTGCCAAGCGAGTCGGAGCTAGGATTT
TGCTTACATCAACTTCAGAGGTTTACGGAGATCCTCTTGTGCATCCCCAG
GATGAGAGCTATTGGGGAAATGTGAACCCAATTGGAGTCAGGAGTTGCTA
TGATGAGGGAAAAAGAGTTGCAGAAACTTTGATGTTTGACTACCATCGGC
AGCATGGGATTGAGATAAGGATTGCTAGGATTTTCAACACCTATGGACCC
CGCATGAATATTGATGATGGTCGTGTTGTCAGCAATTTTATTGCTCAAGC
AATCCGTGGCGAACCCTTGACTGTTCAAGCTCCTGGAACACAACTCGTAG
TTTCTGTTATGTCTCAGACATGGTTGATGGCCTTATTCGGCTT
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