FC920481
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RFBB_ECOLX (dTDP-glucose 4,6-dehydratase OS=Escherichia coli GN=rfbB PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12 Identity = 62/233 (26.61%), Postives = 105/233 (45.06%), Query Frame = 2 Query: 20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLVHPQDES------YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQL 646 M+ILVTGGAGFIGS +V ++ N ++ V+ VD + G+ ++L + R+ D+ + ++D + HLA + P I+TN++GT +L A K+ R ST EVYGD L HP + + + S Y K ++ L+ + R +G+ ++ N YGP + +++ I A+ G+ L + G Q+ Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLAEISDSERYSFENADICDAEGDGLYFGQHQLDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSGLDDEKKKNFRFHHISTDEVYGD-LPHPDEVNSNETLQLFTETTAYAPSSPYSASKASSDHLVRAWKRTYGLPTIVSNCSNNYGPYHFPE--KLIPLVILNALEGKALPIYGKGDQI 230
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RMLB_STRMU (dTDP-glucose 4,6-dehydratase OS=Streptococcus mutans GN=rmlB PE=1 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12 Identity = 60/197 (30.46%), Postives = 93/197 (47.21%), Query Frame = 2 Query: 26 ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR----------SCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID 565 I+VTGGAGFIGS+ V + N + V V+D + G++ NL + +G R EL+ D+ + L++ D I H A + +P I TN +GT +L A++ R ST EVYGD P E G+ G + S Y K ++ ++ + R G++ I+ N YGP +I+ Sbjct: 7 IIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNRANLEEILGD-RVELVVGDIADSELVDKLAAKADAIVHYAAESHNDNSLKDPSPFIYTNFVGTYILLEAARKYDIRFHHVSTDEVYGD---LPLREDLPGHGEGPGEKFTAETKYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE 199
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RFBB_RHISN (Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium sp. (strain NGR234) GN=NGR_a03580 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12 Identity = 64/227 (28.19%), Postives = 104/227 (45.81%), Query Frame = 2 Query: 20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----------RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQL 646 MRILVTGGAGFIGS LV + + + EV+ VD + G+ +L+ G + +R D+ + + I + D + HLA + ++TNV GT ML A++ + ++L ST EVYG D + V+P S Y K ++ + R +G+ + I+ N YGP + +++ I A+ +PL V G+ + Sbjct: 1 MRILVTGGAGFIGSALV-RYLVSINAEVLNVDKLTYAGNLASLKPVEGLRNYRFLRADICDRVAINEAFETFQPDYVIHLAAESHVDRSITGADDFVQTNVNGTFTMLETARQYWSNLSQNRKAFFKMLHVSTDEVYGS----LGDRGQFEEVSPYDPSSPYSASKAASDHFATAWQRTYGLPVVISNCSNNYGPFHFPE--KLIPLMILNALDRKPLPVYGTGSNI 220
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_WIGBR (Bifunctional polymyxin resistance protein arnA OS=Wigglesworthia glossinidia brevipalpis GN=arnA PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12 Identity = 62/231 (26.84%), Postives = 105/231 (45.45%), Query Frame = 2 Query: 2 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-WIGHPRFELIRHDVTE------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG----DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643 K F++ +IL+ G GFIG H+ + L++ ++ +D K+NL K +IG+ +F I+ D+ + + + D I L A P+ Y NP+K K + L ++ + RI+ STSEVYG D G + R Y K++ + +++ Y ++ + I R FN GP ++ + RV + I I G P+T+ G Q Sbjct: 309 KSFKNLKKILILGVNGFIGYHITNLLLKYNNYKIYGID-----IKNNLVKSFIGNEKFCFIKGDIKQYYNWVKKKIKKCDIILPLIAIARPMQYIKNPLKVFKIDFEENLKIIRYCVKYKKRIIFPSTSEVYGMCKDDYFDEENSNLVTGAIK--NQRWIYSSSKQLLDRIIWAYGVKNNLNFTIFRPFNWIGPGLDDFKIAEKQNARVTTQIIFNLINGLPVTIVNNGNQ 532
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: TGDS_MOUSE (dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11 Identity = 63/217 (29.03%), Postives = 94/217 (43.32%), Query Frame = 2 Query: 23 RILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNY-FTGSKDNLRKWIGHPRFELIRHDVTE----PLLIEVDQI---YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643 R+LVTGGAGFI SH++ L+E+ + +IV +D + S NL ++ I+ D+ + LL EV++I H A + NV GT ++ A G + + ST EVYG L DES +P + Y K AE + Y ++ + I R N YGP + RV+ FI+ + G Q Sbjct: 19 RVLVTGGAGFIASHVIVSLVEDYPDYMIVNLDKLDYCASLKNLEPVSNKQNYKFIQGDICDSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVNAAYEAGVEKFIYVSTDEVYGGSLDQEFDES-----SPKQPTNPYASSKAAAECFVQSYWERYKFPVVITRSSNVYGPHQYPE--RVIPKFISLLQHNRKCCIHGSGLQ 228
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: TGDS_HUMAN (dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11 Identity = 61/217 (28.11%), Postives = 92/217 (42.40%), Query Frame = 2 Query: 23 RILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNY-FTGSKDNLRKWIGHPRFELIRHDVTE----PLLIE---VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643 R+LVTGGAGFI SH++ L+E+ N +I+ +D + S NL ++ I+ D+ + LL E +D + H A + NV GT ++ A + + ST EVYG L DES +P + Y K AE + Y Q+ + I R N YGP + +V+ FI+ + G Q Sbjct: 19 RVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKFIYVSTDEVYGGSLDKEFDES-----SPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGSGLQ 228
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: TGDS_BOVIN (dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11 Identity = 61/217 (28.11%), Postives = 92/217 (42.40%), Query Frame = 2 Query: 23 RILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNY-FTGSKDNLRKWIGHPRFELIRHDVTE----PLLIE---VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643 R+LVTGGAGFI SH++ L+E+ N +I+ +D + S NL ++ I+ D+ + LL E +D + H A + NV GT ++ A + + ST EVYG L DES +P + Y K AE + Y Q+ + I R N YGP + +V+ FI+ + G Q Sbjct: 19 RVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKFIYVSTDEVYGGSLDKEFDES-----SPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGTGLQ 228
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: GALE_LACHE (UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11 Identity = 56/213 (26.29%), Postives = 98/213 (46.01%), Query Frame = 2 Query: 20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL-TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDG-------RVVSNFIAQAIRGE 613 M++LV GGAG+IGSH V +L++ E N+V+V+D +TG + + P+ + + D+ + L+ ++D + H A + P+K NV G +++L + L+ +S++ YG P P E P+ + Y E K + E +M + GI+ R FN G + G ++ N + AI G+ Sbjct: 1 MKVLVIGGAGYIGSHAVRELVK-EGNDVLVLDALYTGHRKAV-----DPKAKFYQGDIEDTFLVSKILRDEKIDAVMHFAAYSLVPESVKKPLKYYDNNVTGMISLLQAMNDANVKYLVFSSSAATYGIPKKLPITED-----TPLNPINPYGETKMMMEKIMAWADKADGIKYTALRYFNVAGASSDGSIGEDHAPETHLIPNILKSAISGD 202
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: SPSJ_BACSU (Spore coat polysaccharide biosynthesis protein spsJ OS=Bacillus subtilis GN=spsJ PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11 Identity = 55/226 (24.34%), Postives = 96/226 (42.48%), Query Frame = 2 Query: 29 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNML-GLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQLVVSVMSQTWLMA 682 L+TGGAGFIG ++ + V+D + + + K + RF ++ D++ I+ D + H A + I TNV+GT + + K +++ ST EVYGD D+ + P+ + Y K ++ L+ Y + H + I R N YGP + + +++ I A +G P+ + G Q+ + WL A Sbjct: 6 LITGGAGFIGLTFTKLMLRETDARITVLDKLTYASHPEEMEKLKQNSRFRFVKGDISVQEDIDRAFDETYDGVIHFAAESHVDRSISQAEPFITTNVMGTYRLAEAVLKGKAKKLIHISTDEVYGD---LKADDPAFTETTPLSPNNPYSASKASSDLLVLSYVKTHKLPAIITRCSNNYGPYQHSE--KMIPTIIRHAKQGLPVPLYGDGLQI------RDWLFA 220
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARAE4_ARATH (Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsis thaliana GN=At5g44480 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11 Identity = 62/235 (26.38%), Postives = 102/235 (43.40%), Query Frame = 2 Query: 26 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----KDNLRKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPA---SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHP-QDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG----------PRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQLVVS 655 +LVTGGAG+IGSH +L+ + V +VDN G+ K + + R + I D+ +PL +E D + H A A Y I +N +G L +A+ +++ +ST YG+P P +++ +NP Y + K++AE ++ D+ + + + I R FN G PR + + +S A RG +Q GT S Sbjct: 97 VLVTGGAGYIGSHAALRLL-RDSYRVTIVDNLSRGNLGAVKTLQQLFPQTGRLQFIYADLGDPLAVEKIFSENAFDAVMHFAAVAYVGESTLYPLKYYHNITSNTLGVLE--AMARHKVKKLIYSSTCATYGEPEKMPITEDTPQVPINP------YGKAKKMAEDMILDFSKNSDMAVMILRYFNVIGSDPGGRLGEAPRPELREQGRISGACFDAARGFIPGLQVKGTDYKTS 322 The following BLAST results are available for this feature:
BLAST of FC920481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 111
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920481 ID=FC920481; Name=FC920481; organism=Citrus clementina; type=EST; length=693bpback to top |