FC920481

Overview
NameFC920481
Unique NameFC920481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_ECOUT (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain UTI89 / UPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 61/221 (27.60%), Postives = 107/221 (48.42%), Query Frame = 2 
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ 533
[Close]
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_ECOSM (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 61/221 (27.60%), Postives = 107/221 (48.42%), Query Frame = 2 
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ 533
[Close]
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_ECOSE (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain SE11) GN=arnA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 61/221 (27.60%), Postives = 107/221 (48.42%), Query Frame = 2 
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ 533
[Close]
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_ECOLU (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 61/221 (27.60%), Postives = 107/221 (48.42%), Query Frame = 2 
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ 533
[Close]
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_ECOLI (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12) GN=arnA PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 61/221 (27.60%), Postives = 107/221 (48.42%), Query Frame = 2 
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ 533
[Close]
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_ECOLC (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=arnA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 61/221 (27.60%), Postives = 107/221 (48.42%), Query Frame = 2 
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ 533
[Close]
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_ECOK1 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O1:K1 / APEC GN=arnA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 61/221 (27.60%), Postives = 107/221 (48.42%), Query Frame = 2 
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ 533
[Close]
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_ECOHS (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O9:H4 (strain HS) GN=arnA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 61/221 (27.60%), Postives = 107/221 (48.42%), Query Frame = 2 
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ 533
[Close]
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_ECODH (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12 / DH10B) GN=arnA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 61/221 (27.60%), Postives = 107/221 (48.42%), Query Frame = 2 
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ 533
[Close]
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_ECOBW (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12 / BW2952) GN=arnA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 61/221 (27.60%), Postives = 107/221 (48.42%), Query Frame = 2 
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ 533
The following BLAST results are available for this feature:
BLAST of FC920481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ARNA_ECOUT2.922e-1627.60Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOSM2.922e-1627.60Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOSE2.922e-1627.60Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOLU2.922e-1627.60Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOLI2.922e-1627.60Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOLC2.922e-1627.60Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOK12.922e-1627.60Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOHS2.922e-1627.60Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECODH2.922e-1627.60Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOBW2.922e-1627.60Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32008H11EF RVDevelop1 Citrus clementina cDNA clone C32008H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920481 ID=FC920481; Name=FC920481; organism=Citrus clementina; type=EST; length=693bp
CAAATTTTTTCAGTCCAACATGAGGATTCTGGTTACTGGAGGAGCTGGAT
TTATCGGCTCTCACCTTGTGGACAAGTTGATGGAAAATGAAAAGAACGAG
GTGATTGTAGTTGATAACTACTTCACTGGCTCAAAGGATAACCTAAGGAA
ATGGATTGGTCACCCAAGATTTGAGCTTATTCGTCATGATGTGACTGAGC
CATTGTTGATCGAGGTTGATCAAATTTATCACCTTGCTTGTCCTGCCTCC
CCAATCTTCTACAAATACAACCCTGTAAAGACTATAAAGACAAATGTGAT
TGGTACATTGAACATGCTGGGGCTTGCCAAGCGAGTCGGAGCTAGGATTT
TGCTTACATCAACTTCAGAGGTTTACGGAGATCCTCTTGTGCATCCCCAG
GATGAGAGCTATTGGGGAAATGTGAACCCAATTGGAGTCAGGAGTTGCTA
TGATGAGGGAAAAAGAGTTGCAGAAACTTTGATGTTTGACTACCATCGGC
AGCATGGGATTGAGATAAGGATTGCTAGGATTTTCAACACCTATGGACCC
CGCATGAATATTGATGATGGTCGTGTTGTCAGCAATTTTATTGCTCAAGC
AATCCGTGGCGAACCCTTGACTGTTCAAGCTCCTGGAACACAACTCGTAG
TTTCTGTTATGTCTCAGACATGGTTGATGGCCTTATTCGGCTT
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