FC920481
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: GALE_STRMU (UDP-glucose 4-epimerase OS=Streptococcus mutans GN=galE PE=3 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14 Identity = 58/187 (31.02%), Postives = 89/187 (47.59%), Query Frame = 2 Query: 20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI--------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPR 553 M ILV GGAG+IGSH+VD+L+E + EV+VVD+ TG + + HP + + D+ + + +VD + H A + P+K N G + +L + G + I+ +ST+ YG P DE P + Y E K + ET+M R +GI+ R FN G + Sbjct: 1 MAILVLGGAGYIGSHMVDRLIEKGEEEVVVVDSLVTGHRAAV-----HPAAKFYQGDLADREFMSMVFRENPDVDAVIHFAAYSLVAESMKKPLKYFDNNTAGMIKLLEVMSEFGVKYIVFSSTAATYGIP-----DEIPIKETTPQRPINPYGESKLMMETIMKWSDRAYGIKFVPLRYFNVAGAK 177
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_PSEPF (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14 Identity = 63/221 (28.51%), Postives = 106/221 (47.96%), Query Frame = 2 Query: 23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643 R+L+ G GFIG+HL ++L+ +E+ EV +D GS D + + HPRF + D++ E + + D + L A+PI Y NP++ + + L ++ + R++ STSEVYG DE V PI R Y K++ + +++ Y + G+ + R FN GPR++ I R ++ I + G P+ + G Q Sbjct: 320 RVLILGVNGFIGNHLSERLLRDERYEVYGLD---IGS-DAIDRLRSHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYGMCQDKHFDEDRSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQ 535
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.458e-14 Identity = 66/188 (35.11%), Postives = 89/188 (47.34%), Query Frame = 2 Query: 26 ILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDN---YFTGSKDNLRKWI--GHPRFELIR------HDVTEPLLI-EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG 547 ILVTG AGFIG HL LM+N E +VI +DN Y+ R I + + I+ D+ E L E+D I HL A + NP IK+N +GTLN+ A+R +++ S+S VYG P E + PI S Y KR E + YH +GI++ R F YG Sbjct: 6 ILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYTFIKLDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARRFDIEKVVYASSSSVYGGNRKIPFSEDDRVD-KPI---SLYASTKRSNELMAHVYHHLYGIKMIGLRFFTVYG 189 HSP 2 Score: 27.7202 bits (60), Expect = 3.458e-14 Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 1 Query: 637 NTTRSFCYVSDMVDGLIR 690 N R F Y+SD+VDG++R Sbjct: 218 NMERDFTYISDVVDGILR 235
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14 Identity = 65/222 (29.28%), Postives = 101/222 (45.50%), Query Frame = 2 Query: 26 ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYG----DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQL 646 IL+TG AGFI SH+ ++L+ + + +++V+D + + NL P F+ ++ D+ L+ +D I H A N + K N+ GT +L K G R + ST EVYG D LV + S NP Y K AE L+ Y R +G+ + R N YGP N +++ FI A+RG+ L + G+ + Sbjct: 9 ILITGAAGFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLNPSKHSPNFKFVKGDIASADLVNHLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDALVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPEKLIPKFILLAMRGQVLPIHGDGSNV 222
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_PSEF5 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14 Identity = 61/225 (27.11%), Postives = 109/225 (48.44%), Query Frame = 2 Query: 23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-----VNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643 R+L+ G GFIG+HL ++L+ ++K +V +D GS D + + HP F + D++ E + + D + L A+PI Y NP++ + + L ++ + R++ STSEVYG QD+++ + V PI R Y K++ + +++ Y + G+ + R FN GPR++ I R ++ I + G P+ + G Q Sbjct: 320 RVLILGVNGFIGNHLSERLLRDDKYDVYGLD---IGS-DAIERLRSHPNFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG----MCQDKNFDEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQ 535
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_PSEU2 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=arnA PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13 Identity = 61/225 (27.11%), Postives = 109/225 (48.44%), Query Frame = 2 Query: 23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-----VNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643 R+L+ G GFIG+HL ++L+++++ E+ +D GS D + + P F I D++ E + + D + L A+PI Y NP++ + + L ++ + R++ STSEVYG QD ++ + V PI R Y K++ + +++ Y Q G++ + R FN GPR++ I R ++ I + G P+ + G Q Sbjct: 321 RVLILGVNGFIGNHLSERLLQDDRYEIYGMD---IGS-DAIERLRAKPNFHFIEGDISIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG----MCQDANFNEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAY-GQKGLQFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQ 536
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAE (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa GN=arnA PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13 Identity = 66/227 (29.07%), Postives = 108/227 (47.58%), Query Frame = 2 Query: 11 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643 Q R+L+ G GFIG+HL ++L+ + + EV +D GS D + + P F + D+ E + + D I L A+PI Y NP++ + + L ++ + G R++ STSEVYG DP +D S V PI R Y K++ + +++ Y +Q G+ + R FN GPR++ I R ++ I + G P+ + G Q Sbjct: 315 QRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDP-DFDEDRSNL-VVGPINKQRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQ 534
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA8 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain LESB58) GN=arnA PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13 Identity = 66/227 (29.07%), Postives = 108/227 (47.58%), Query Frame = 2 Query: 11 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643 Q R+L+ G GFIG+HL ++L+ + + EV +D GS D + + P F + D+ E + + D I L A+PI Y NP++ + + L ++ + G R++ STSEVYG DP +D S V PI R Y K++ + +++ Y +Q G+ + R FN GPR++ I R ++ I + G P+ + G Q Sbjct: 315 QRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDP-DFDEDRSNL-VVGPINKQRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQ 534
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA7 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain PA7) GN=arnA PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13 Identity = 66/227 (29.07%), Postives = 108/227 (47.58%), Query Frame = 2 Query: 11 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643 Q R+L+ G GFIG+HL ++L+ + + EV +D GS D + + P F + D+ E + + D I L A+PI Y NP++ + + L ++ + G R++ STSEVYG DP +D S V PI R Y K++ + +++ Y +Q G+ + R FN GPR++ I R ++ I + G P+ + G Q Sbjct: 315 QRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDP-DFDEDRSNL-VVGPINKQRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLESARIGSSRAITQLILHLVEGTPIRLVDGGAQ 534
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_PSEFS (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain SBW25) GN=arnA PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13 Identity = 60/221 (27.15%), Postives = 105/221 (47.51%), Query Frame = 2 Query: 23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643 R+L+ G GFIG+HL ++L+ +++ EV +D GS D + + HP F + D++ E + + D + L A+PI Y NP++ + + L ++ + R++ STSEVYG DE V P+ R Y K++ + +++ Y + G+ + R FN GPR++ I R ++ I + G P+ + G Q Sbjct: 320 RVLILGVNGFIGNHLSERLLRDDRYEVYGLD---IGS-DAIERLRSHPNFHYVEGDISIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYGMCQDQYFDEDTSNLVVGPVNKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQ 535 The following BLAST results are available for this feature:
BLAST of FC920481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 111
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920481 ID=FC920481; Name=FC920481; organism=Citrus clementina; type=EST; length=693bpback to top |