FC920483

Overview
NameFC920483
Unique NameFC920483
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920483_ssr171 microsatellite FC920483_ssr171:171..180. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12617 contig Ccv1_Contig12617:65..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_PHOPO (Riboflavin synthase alpha chain OS=Photobacterium phosphoreum GN=ribE PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.184e-21
Identity = 57/151 (37.75%), Postives = 83/151 (54.97%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTV-LEGVHLGDSIAVNGTCLTVTEFGTQLEDFTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTV 699
            +FTGI+E +G I  +  S    F + +   T+ L  V +GDSIA NG CLTV +       +   LS ETL +T+    + G  VNLE+A+ PT+R GGH V GHVD    ++       ++ I ++    + KY+  KG + +DG SLTV
Sbjct:    1 MFTGIIEAVGNISAI-TSKGSDFEVSVNCDTLDLADVKIGDSIATNGICLTVVKLTAN--SYVADLSIETLSRTAFNYYKVGQAVNLEKAMLPTTRFGGHIVSGHVDAVAEVIECRTSGRAIDIWIRVPSQIEKYLSEKGSVTVDGVSLTV 148          
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_CHLMU (Riboflavin synthase alpha chain OS=Chlamydia muridarum GN=ribE PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.024e-19
Identity = 58/153 (37.91%), Postives = 94/153 (61.44%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDV 708
            +F+GI++E+  ++ +    D    + I A+ +++GV  G SIAV+G CLT+ +   +L  F   ++ ET+  T++     GS+VNLER+V+    +GGHFV GHV G G I+++E      ++  K   +L+ Y++ KGFIAIDG SLT+  V
Sbjct:    1 MFSGIIQEVARVDLIHHYGDS-MEIGIFARNLVDGVP-GSSIAVDGICLTLVKREFELLFFD--VTEETMACTTIKNYTVGSMVNLERSVRLGDEIGGHFVSGHVCGVGTIIAVEKS----YMFFKAPTNLVPYVLEKGFIAIDGISLTIAQV 145          
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_SHIFL (Riboflavin synthase alpha chain OS=Shigella flexneri GN=ribE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.338e-19
Identity = 60/155 (38.71%), Postives = 89/155 (57.42%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDS--LWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDV 708
            +FTGIV+   ++  +    +    +      +L+G+  G S+A NG CLTVTE       F   L  ETLR T+L +L+ G  VN+ERA + +  +GGH + GH+  T  +  +   E++  +W KV+ D  L+KYI+ KGFI IDG SLTV +V
Sbjct:    1 MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFD--LMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQ-DSQLMKYILYKGFIGIDGISLTVGEV 152          
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_ECOLI (Riboflavin synthase alpha chain OS=Escherichia coli (strain K12) GN=ribE PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.338e-19
Identity = 60/155 (38.71%), Postives = 89/155 (57.42%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDS--LWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDV 708
            +FTGIV+   ++  +    +    +      +L+G+  G S+A NG CLTVTE       F   L  ETLR T+L +L+ G  VN+ERA + +  +GGH + GH+  T  +  +   E++  +W KV+ D  L+KYI+ KGFI IDG SLTV +V
Sbjct:    1 MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFD--LMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQ-DSQLMKYILYKGFIGIDGISLTVGEV 152          
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_HAEIN (Riboflavin synthase alpha chain OS=Haemophilus influenzae GN=ribE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.304e-18
Identity = 59/158 (37.34%), Postives = 94/158 (59.49%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLGA-SNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDS--LWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDVFD 714
            +FTGIV+    I  +   +N    V+K+  + + + + +G SIA NG CLTVTE    L  F   L  ETL+ T+L  ++ G  VN+ERA+Q  + +GGH + GH+  T  I  +   E++  +W ++ +   ++KYI+ KGF+A+DG SLT+ +V D
Sbjct:    1 MFTGIVQGTAPIHSIKEKANFRTQVVKLLPE-MRKDLEIGASIANNGVCLTVTEINGDLVSFD--LMQETLKITNLGTVKVGDYVNIERAMQMGTEIGGHLLSGHIYCTAKISDIIASENNRQIWFELPS-ADVMKYILTKGFVAVDGISLTIGEVRD 154          
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_BUCAP (Riboflavin synthase alpha chain OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ribE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18
Identity = 58/155 (37.42%), Postives = 84/155 (54.19%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVI--VSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDV 708
            +FTGIV  +  +  +    +        +  +L+ + +GDS+A NG CLTV         F   +   T+  T+L  L  G  VN+ER+++    MGGH + GH+  TG I  +S   +   LW KVK D SL+KYI  KGFIAIDG SLT+ ++
Sbjct:    1 MFTGIVNGIARVVSINKKKNFHTYTVNFSSILLKNLKIGDSVAHNGCCLTVKYINCPHVVFD--IMKITIANTNLGVLNIGDYVNIERSLKYGDEMGGHIISGHIMNTGEISKISKLDKNYILWCKVK-DLSLMKYIFYKGFIAIDGISLTINNI 152          
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_CHLTR (Riboflavin synthase alpha chain OS=Chlamydia trachomatis GN=ribE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.136e-17
Identity = 54/153 (35.29%), Postives = 93/153 (60.78%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDV 708
            +F+GI++E+  ++ +    D    + + A+ +++ V  G S +V+G CLT+ +   +L  F   ++ ET+  T++ +   G++VNLER+V+    +GGHFV GHV G G I+++E      ++  K   +L+ YI+ KGFIAIDG SLT+  V
Sbjct:    1 MFSGIIQEVARVDLIHHLRDS-MEIGVFARKLIDVVP-GSSFSVDGICLTLVKRQYELLFFD--VTEETMAWTTIKDYTVGTMVNLERSVRLGDEIGGHFVSGHVCGIGTIIAIEKS----YMFFKAPANLVPYILEKGFIAIDGISLTIARV 145          
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_CHLPN (Riboflavin synthase alpha chain OS=Chlamydia pneumoniae GN=ribE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.084e-16
Identity = 57/153 (37.25%), Postives = 85/153 (55.56%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDV 708
            +F+GI++E+GE+    A  +G  +        +  +  GDS+AV+G CLT+T    + + F D + PETL  T+L E +    VNLE A++    +GGH + GHV GT  I  ++          +  K L +Y+  KGFIAIDG SLT+V V
Sbjct:    1 MFSGIIQELGEVCFFEAQGNGLSLGIKSTPLFVTPLVTGDSVAVDGVCLTLTSCN-ESKIFFDVI-PETLACTTLGEKRCSDQVNLEAALKMGDSIGGHLLSGHVFGTAEIFLIKENR----YYFRGSKELSQYLFEKGFIAIDGISLTLVSV 147          
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_BUCAI (Riboflavin synthase alpha chain OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ribE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 53/155 (34.19%), Postives = 80/155 (51.61%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEPEEDS--LWIKVKTDKSLLKYIVPKGFIAIDGTSLTVVDV 708
            +FTGI+     I  +                + + + LGDSI+ NG CLTV             +  ETL+ T+L  L  G  +N+ER+++    +GGH + GHV  T  I  M   +++  +W+K+  + SL+KYI  KGFI +DG SLTV D+
Sbjct:    1 MFTGIINGTATIVYIEKKKKKYRYTVELPSNLSKNLKLGDSISHNGCCLTVKLINNSF--IICDVIQETLKSTNLGILNIGDSINIERSIKYGDEIGGHIISGHVMNTAEISKMSKSDNNCVIWLKM-NNMSLMKYIFYKGFICVDGISLTVNDI 152          
BLAST of FC920483 vs. ExPASy Swiss-Prot
Match: RISA_BUCBP (Riboflavin synthase alpha chain OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ribE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 51/152 (33.55%), Postives = 79/152 (51.97%), Query Frame = 1
Query:  250 LFTGIVEEMGEIEQLGASNDGGFVMKIRAKTVLEGVHLGDSIAVNGTCLTVTEFGTQLEDFTDGLSPETLRKTSLIELQPGSLVNLERAVQPTSRMGGHFVQGHVDGTGVIVSMEP--EEDSLWIKVKTDKSLLKYIVPKGFIAIDGTSLTV 699
            +FTGIV  +G++ ++             +  +++ + LG SI+ NG CLTV      +  F   +  ETLR TSL  +  G  +NLER+++    +GGH V GH+  TGV+   +       LWI +      +KY   KGF+ +DG SLT+
Sbjct:    1 MFTGIVRGLGKVVKILKEKKISQWEVETSNELVKNLMLGASISCNGCCLTVRNIFRTI--FCVDIVEETLRSTSLNTIIVGQYINLERSIKFGEEVGGHLVSGHIITTGVVSDKKELFSNQELWISLSA-SFFIKYFFYKGFVCVDGISLTI 149          
The following BLAST results are available for this feature:
BLAST of FC920483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RISA_PHOPO3.184e-2137.75Riboflavin synthase alpha chain OS=Photobacterium ... [more]
RISA_CHLMU1.024e-1937.91Riboflavin synthase alpha chain OS=Chlamydia murid... [more]
RISA_SHIFL1.338e-1938.71Riboflavin synthase alpha chain OS=Shigella flexne... [more]
RISA_ECOLI1.338e-1938.71Riboflavin synthase alpha chain OS=Escherichia col... [more]
RISA_HAEIN4.304e-1837.34Riboflavin synthase alpha chain OS=Haemophilus inf... [more]
RISA_BUCAP7.341e-1837.42Riboflavin synthase alpha chain OS=Buchnera aphidi... [more]
RISA_CHLTR2.136e-1735.29Riboflavin synthase alpha chain OS=Chlamydia trach... [more]
RISA_CHLPN3.084e-1637.25Riboflavin synthase alpha chain OS=Chlamydia pneum... [more]
RISA_BUCAI6.871e-1634.19Riboflavin synthase alpha chain OS=Buchnera aphidi... [more]
RISA_BUCBP1.172e-1533.55Riboflavin synthase alpha chain OS=Buchnera aphidi... [more]

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Properties
Property NameValue
Genbank descriptionC32009A01EF RVDevelop1 Citrus clementina cDNA clone C32009A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920483 ID=FC920483; Name=FC920483; organism=Citrus clementina; type=EST; length=715bp
GGGTTTTTTTGTAGAAATATCTACAACGAAAAAAAATGGCTGCTTCAGCT
AAATTCTCTCTCACACCCTCCTTCAATCCCAGAATCCTATCCCCCTAAAA
CCCTAGTATCCAATTTCCTAACGATCCCTTCAAAATCTTACCTCAAATTC
AACCCCTATTTCAAACCCAGCTCTCTCTCTCACCTCACCACCATACCCAA
ACCCAAATTCAAATCTGGAACCCAGTTTCACAACCGGATGATCCGCTGCC
TTTTCACCGGGATCGTCGAAGAAATGGGGGAAATCGAGCAGCTGGGTGCT
TCCAACGACGGCGGATTCGTCATGAAAATACGTGCGAAAACTGTTCTTGA
AGGCGTCCACTTAGGCGACAGCATTGCTGTTAATGGAACGTGTCTCACTG
TTACGGAATTTGGTACCCAATTGGAAGATTTTACCGATGGATTATCGCCT
GAGACTTTGAGAAAGACTTCTTTGATTGAATTGCAACCGGGTTCGTTGGT
GAATTTGGAGAGGGCAGTACAGCCGACGAGTCGTATGGGCGGGCATTTTG
TGCAGGGGCATGTGGATGGCACGGGGGTGATTGTGTCAATGGAGCCTGAA
GAGGATTCTTTGTGGATTAAAGTGAAAACAGATAAAAGTTTATTGAAGTA
TATAGTCCCTAAAGGGTTTATAGCCATCGATGGTACTAGTTTAACGGTGG
TGGATGTGTTTGATG
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