FC920484

Overview
NameFC920484
Unique NameFC920484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5984 contig Ccv1_Contig5984:236..946. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C25_ORYSJ (Probable protein phosphatase 2C 25 OS=Oryza sativa subsp. japonica GN=Os02g0685600 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.597e-33
Identity = 74/158 (46.84%), Postives = 99/158 (62.66%), Query Frame = 1
Query:  256 MLSRLMNFLRACWRPSSDRYVHTSADTAGRQ------EGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            M S L+    AC  P+  RY  T  D  G        +GLLW +D G+H  GEFS AVVQAN  LED SQ+E+G  +T        F+G+YDGHGG + +R+I+DHLF HL R   E +++S +V++ A+ ATE+GF +LV +   +KP IAAVGSCC
Sbjct:    1 MFSWLLRIASACLGPAR-RYARTRKDEDGGDNGGGVADGLLWSRDLGRHAAGEFSFAVVQANEALEDHSQVETGSAAT--------FVGVYDGHGGADAARFISDHLFAHLIRLARESETVSEEVVRGAFSATEEGFLTLVRRTQFLKPMIAAVGSCC 149          
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C78_ORYSJ (Probable protein phosphatase 2C 78 OS=Oryza sativa subsp. japonica GN=Os12g0580900 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.578e-31
Identity = 64/124 (51.61%), Postives = 84/124 (67.74%), Query Frame = 1
Query:  340 GRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            G  +GLLW+ +   H +GE+S+AV QAN  LEDQ Q+ + P +T        F+G+YDGHGGPE SR+I+  LF HL RF SEQ  MS D IK+A+ ATE+ F  +V + W  +PQIA+VGSCC
Sbjct:   24 GGGDGLLWHAELKPHASGEYSIAVAQANAELEDQGQVVTSPAAT--------FVGVYDGHGGPEASRFISSRLFPHLHRFASEQGGMSTDAIKRAFHATEEEFLHMVKRSWLKQPQIASVGSCC 139          
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C68_ARATH (Probable protein phosphatase 2C 68 OS=Arabidopsis thaliana GN=At5g06750 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.083e-29
Identity = 62/127 (48.82%), Postives = 89/127 (70.08%), Query Frame = 1
Query:  331 DTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            D++   + LLW ++  +H  G+FS+AVVQAN ++ED SQ+E+G      +G    F+G+YDGHGGPE SRYI+DHLF HL R + E+  +S + ++ A+ ATE+GF +LV +   +KP IAAVGSCC
Sbjct:   35 DSSSSGDSLLWSRELERHSFGDFSIAVVQANEVIEDHSQVETG------NG--AVFVGVYDGHGGPEASRYISDHLFSHLMRVSRERSCISEEALRAAFSATEEGFLTLVRRTCGLKPLIAAVGSCC 153          
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C63_ARATH (Probable protein phosphatase 2C 63 OS=Arabidopsis thaliana GN=At4g33920 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.083e-29
Identity = 60/121 (49.59%), Postives = 84/121 (69.42%), Query Frame = 1
Query:  349 EGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            +GLLW  +   H  G++S+AVVQAN+ LEDQSQ+ +   +T        ++G+YDGHGGPE SR++N HLF ++ +F  E   +SVDVIKKA++ TE+ F  +V +  PMKPQ+A VGSCC
Sbjct:   20 DGLLWQSELRPHAGGDYSIAVVQANSRLEDQSQVFTSSSAT--------YVGVYDGHGGPEASRFVNRHLFPYMHKFAREHGGLSVDVIKKAFKETEEEFCGMVKRSLPMKPQMATVGSCC 132          
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C43_ORYSJ (Probable protein phosphatase 2C 43 OS=Oryza sativa subsp. japonica GN=Os04g0584366 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.151e-29
Identity = 70/149 (46.98%), Postives = 93/149 (62.42%), Query Frame = 1
Query:  286 ACWRPSSDRYVHTSADTA-GRQEG------LLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            ACW     RY  T  D   G   G      LLW +D  +H  GEFS AVVQAN++LED SQ+E+G  +T        FIG+YDGHGG E SR+I++HL  HL R   E+ ++S D+++ A+ ATE+GF SLV +   +KP IA++GSCC
Sbjct:   11 ACW-DRVRRYALTRRDEEDGSGSGGDADDLLLWSRDLVRHAAGEFSFAVVQANDVLEDHSQVETGAAAT--------FIGVYDGHGGAEASRFISNHLAAHLVRLAQERGTISEDIVRNAFSATEEGFLSLVRRTHLIKPSIASIGSCC 150          
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C36_ORYSJ (Probable protein phosphatase 2C 36 OS=Oryza sativa subsp. japonica GN=Os03g0832400 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.912e-26
Identity = 64/165 (38.79%), Postives = 96/165 (58.18%), Query Frame = 1
Query:  256 MLSRLMNFLRAC---W--------RPSSDRYVHTSADTAGRQ--EGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            ML  L+  L AC   W        R SS      +AD A  +  +GLLW++D  +   GE S+AVVQ N++LEDQ ++ESGP          T IG++DGH GP+ +R+  DHL  +L+   S  + ++ D I+ A+ ATE+GF ++V++ W  +P +A VG+CC
Sbjct:    1 MLGALLRLLSACGGVWPTSPAPPARSSSSSSAAAAADQAAAEGRDGLLWWRDLARCHAGELSVAVVQGNHVLEDQCRVESGPPPLA-----ATCIGVFDGHAGPDAARFACDHLLPNLREAASGPEGVTADAIRDAFLATEEGFLAVVSRMWEAQPDMATVGTCC 160          
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C34_ORYSJ (Probable protein phosphatase 2C 34 OS=Oryza sativa subsp. japonica GN=BIPP2C2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.261e-26
Identity = 55/125 (44.00%), Postives = 79/125 (63.20%), Query Frame = 1
Query:  337 AGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            A   +G+LW  +   H  GEFSMA  QAN  +EDQ+Q+ + P +TL        +G+YDGHGG + SR++   LF H++RF  EQ  MS +VI++A+ A E+ F   V + W  +P++AAVGSCC
Sbjct:   16 AAAADGMLWQTELRPHAAGEFSMAAAQANLAMEDQAQVLASPAATL--------VGVYDGHGGADASRFLRSRLFPHVQRFEKEQGGMSTEVIRRAFGAAEEEFLQQVRQAWRQRPKMAAVGSCC 132          
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C34_ORYSI (Probable protein phosphatase 2C 34 OS=Oryza sativa subsp. indica GN=BIPP2C2 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.261e-26
Identity = 55/125 (44.00%), Postives = 79/125 (63.20%), Query Frame = 1
Query:  337 AGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            A   +G+LW  +   H  GEFSMA  QAN  +EDQ+Q+ + P +TL        +G+YDGHGG + SR++   LF H++RF  EQ  MS +VI++A+ A E+ F   V + W  +P++AAVGSCC
Sbjct:   16 AAAADGMLWQTELRPHAAGEFSMAAAQANLAMEDQAQVLASPAATL--------VGVYDGHGGADASRFLRSRLFPHVQRFEKEQGGMSTEVIRRAFGAAEEEFLQQVRQAWRQRPKMAAVGSCC 132          
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C29_ORYSJ (Probable protein phosphatase 2C 29 OS=Oryza sativa subsp. japonica GN=Os03g0207400 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24
Identity = 50/121 (41.32%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  349 EGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            +GL+W      H +G++S+AV QAN  LEDQ+Q+   P +TL        +G+YDGHGGPE +R++N  LF  ++ F ++   +S +V++KA+  TE+ F + V + WP +P+I +VGSCC
Sbjct:   29 DGLVWDVALKAHASGDYSVAVAQANEALEDQAQVFVSPAATL--------VGVYDGHGGPEAARFVNKRLFSLIQEFAAQSGGISAEVLEKAFGETEEEFVASVQRSWPSQPRILSVGSCC 141          
BLAST of FC920484 vs. ExPASy Swiss-Prot
Match: P2C61_ORYSJ (Probable protein phosphatase 2C 61 OS=Oryza sativa subsp. japonica GN=Os07g0114000 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 49/129 (37.98%), Postives = 75/129 (58.14%), Query Frame = 1
Query:  328 ADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQ-QSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCC 711
            A   G ++ L W  +   H  GEFSMA  QAN ++EDQ+Q+ + P +TL        +G+YDGHGGP+ SR++   LF  +  F +E+  ++  DVI+KA+ A ++ +  L+    P   + AA GSCC
Sbjct:   11 AAARGGRDELTWQAELTAHAAGEFSMAAAQANAVMEDQAQVMASPGATL--------VGVYDGHGGPDASRFLRSRLFPLIHEFAAERGGAVDADVIRKAFLAADEEYLQLLRWSLPNMSRAAASGSCC 131          
The following BLAST results are available for this feature:
BLAST of FC920484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
P2C25_ORYSJ3.597e-3346.84Probable protein phosphatase 2C 25 OS=Oryza sativa... [more]
P2C78_ORYSJ2.578e-3151.61Probable protein phosphatase 2C 78 OS=Oryza sativa... [more]
P2C68_ARATH1.083e-2948.82Probable protein phosphatase 2C 68 OS=Arabidopsis ... [more]
P2C63_ARATH1.083e-2949.59Probable protein phosphatase 2C 63 OS=Arabidopsis ... [more]
P2C43_ORYSJ3.151e-2946.98Probable protein phosphatase 2C 43 OS=Oryza sativa... [more]
P2C36_ORYSJ1.912e-2638.79Probable protein phosphatase 2C 36 OS=Oryza sativa... [more]
P2C34_ORYSJ3.261e-2644.00Probable protein phosphatase 2C 34 OS=Oryza sativa... [more]
P2C34_ORYSI3.261e-2644.00Probable protein phosphatase 2C 34 OS=Oryza sativa... [more]
P2C29_ORYSJ3.052e-2441.32Probable protein phosphatase 2C 29 OS=Oryza sativa... [more]
P2C61_ORYSJ2.956e-1937.98Probable protein phosphatase 2C 61 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC32009A03EF RVDevelop1 Citrus clementina cDNA clone C32009A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920484 ID=FC920484; Name=FC920484; organism=Citrus clementina; type=EST; length=711bp
GAAGCTTTGAAGTAAACAGAAGCTACCGTGTGATTTGGTGGATCTATAGA
TCAAACGGTGTTAAACCCTTGCATGTATTGCTCTGTTTCATTTAGATCTC
CATCGTTTTCATCACTTTAGCTGACGGGAAACTCTGCAACCAGCTTTATT
TTTTGTCGTGAAAGAATTCTGGGTGGGATTTTTATTAGGAATTGTATTTG
CATCCAATTCTGGATGTGGAAGAATAGGAGGCTGTTGGCTGAGGTGAGAT
GAGGGATGTTATCAAGGTTGATGAACTTTCTGAGGGCCTGCTGGCGGCCG
TCCTCGGACCGATATGTCCATACGAGTGCGGATACAGCAGGCCGGCAAGA
GGGGCTACTTTGGTACAAAGACAATGGGCAACACATAAATGGTGAATTCT
CTATGGCCGTTGTTCAGGCTAACAATTTGCTTGAGGACCAGAGCCAGATT
GAGTCTGGCCCCTTGAGCACTCTTGAGTCTGGTCCTTATGGCACTTTTAT
TGGTATCTATGATGGCCATGGCGGGCCTGAGACTTCACGATACATCAATG
ATCACCTGTTTCAGCATCTAAAGAGGTTCACATCAGAGCAGCAATCCATG
TCTGTGGACGTGATAAAGAAAGCTTATCAAGCTACGGAAGATGGATTTTT
CTCCCTTGTAACTAAACAATGGCCTATGAAGCCTCAGATAGCCGCTGTTG
GATCTTGCTGT
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