FC920487

Overview
NameFC920487
Unique NameFC920487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:3..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUSU (Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 3
Query:  360 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGL--VKAFQKSYYTRYG---GGANELA-DGYSTGVGLAAEIIGT--FVLV 677
            G+G LG+A AFG  +  + Y   GISGGH NPAV+  L +A ++     + Y VAQ LGAI+   +  V A  K  ++  G    G  EL+  GYS   GL  EII T  F+++
Sbjct:   33 GIGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLSLTVAGRLPAKDLIPYWVAQVLGAIATAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIII 146          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 53/152 (34.87%), Postives = 73/152 (48.03%), Query Frame = 3
Query:  246 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVK--AFQKSYYTR-YGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 692
            +A +AEFIA            I +   T    N       G++ IA A    +FV V   A  SGGH+NPAVTFGL +   ++++  + Y VAQ LGA     L++     K+  T    GG  EL        G+  EI+ TF LVYTV++
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAFGQLT----NGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLRFVTHGKAIPTHGVSGGTTELE-------GVVFEIVITFALVYTVYA 159          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 34/103 (33.01%), Postives = 56/103 (54.37%), Query Frame = 3
Query:  378 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 686
            IA+ FG  +  L      ISG HINPAVT G  +  ++S++++V+Y+  QC+GAI+G  ++K       +    G +  +   + G  +  E + TF+LV  V
Sbjct:   57 IAFTFGLTVATLAQAIGHISGCHINPAVTVGFLIVGEMSIIKSVLYIAVQCVGAIAGAAVIKVGVSEAVSGLDLGVSSFSSTLTVGQAVLIEALITFILVVVV 159          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = 3
Query:  366 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVG----LAAEIIGTFVLVYTVFS 692
            G++ +A A    + V V     ISGGH+NPAVTFG  +  +VSLVRAV+Y VAQ LGA++   L++           GG        ++GVG    +  E + TF L+Y  ++
Sbjct:   61 GLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLAT--------GGMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYA 165          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 51/157 (32.48%), Postives = 71/157 (45.22%), Query Frame = 3
Query:  222 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 692
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  YM AQ LGA++G  ++ +       R     N L  G S       EI  T   V  +F+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFA 147          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: AQPZ1_AGRT5 (Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 47/113 (41.59%), Postives = 58/113 (51.33%), Query Frame = 3
Query:  360 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA-ISGVGLVKAFQKSYYTRYGG-GANELAD----GYSTGVGLAAEIIGT-FVLV 677
            G+G LG+A+AFG  +  + Y   GISGGH NPAV+ GL +A K      V Y+VAQ LGA ++   L            GG  AN   +    GYS    L  EII T F LV
Sbjct:   33 GIGFLGVAFAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGKFPAANLVPYIVAQVLGAVVAAAALYVILTGKAGAEIGGFAANGYGEHSPGGYSLLSALLIEIILTAFFLV 145          
The following BLAST results are available for this feature:
BLAST of FC920487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
AQPZ_BRUSU2.830e-1140.35Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1[more]
TIP22_MAIZE4.828e-1134.87Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
AQP_HAEIX4.828e-1133.01Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
TIP31_MAIZE6.305e-1137.17Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
MIP_CAVPO6.305e-1132.48Lens fiber major intrinsic protein OS=Cavia porcel... [more]
AQPZ1_AGRT58.235e-1141.59Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain... [more]

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Properties
Property NameValue
Genbank descriptionC32009A08EF RVDevelop1 Citrus clementina cDNA clone C32009A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920487 ID=FC920487; Name=FC920487; organism=Citrus clementina; type=EST; length=693bp
GATCCAAAAACAAGCAAAAAAAAAGAAAAAGAAAAAGAAAAAGGAAAAGG
CTTCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCTGT
TTCTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGG
TGGCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCG
GAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAGC
CTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTCT
TGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGAC
GGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCAT
GATCTTTGTCCTCGTTTACTGCACCGCAGGTATCTCAGGTGGTCACATTA
ACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTC
CGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTGT
TGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTG
GGGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCGCC
GAGATCATCGGCACCTTTGTCTTGGTTTACACTGTCTTCTCGG
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