FC920487

Overview
NameFC920487
Unique NameFC920487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:3..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 57/152 (37.50%), Postives = 79/152 (51.97%), Query Frame = 3
Query:  246 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGA---NELADGYSTGVGLAAEIIGTFVLVYTVFS 692
            RA +AEFI+            I Y   T  A         G++ IA   G  +FV V   A ISGGH+NPAVTFGL +  +++++  V Y +AQ LG+ +   L+K     Y T  GG A   + +A G  +  G+  EII TF LVYTV++
Sbjct:   19 RAYLAEFISTLLFVFAGVGSAIAYAKLTSDA----ALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLK-----YVT--GGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYA 159          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 56/154 (36.36%), Postives = 75/154 (48.70%), Query Frame = 3
Query:  246 RALIAEFIAXXXXXXXXXXXXIGYKSQT-----DPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 692
            +A +AEFI+            I Y   T     DPA         G++ +A   G  +FV V   A ISGGH+NPAVTFGL L  +++++  V Y +AQ LGAI G  LV+         +G        G     G+  EII TF LVYTV++
Sbjct:   20 KAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPA---------GLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCTGVATPTHG------LSGVGAFEGVVMEIIVTFGLVYTVYA 158          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 56/154 (36.36%), Postives = 73/154 (47.40%), Query Frame = 3
Query:  246 RALIAEFIAXXXXXXXXXXXXIGYKSQT-----DPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 692
            +A +AEFIA            I Y   T     DPA         G++ IA A    +FV V   A ISGGH+NPAVTFGL +   ++++  ++Y VAQ LGA      V  F   Y T           G S   G+  EI+ TF LVYTV++
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYSQLTKGGALDPA---------GLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGA-----SVACFLLQYVTHGQAIPTHGVSGISEIEGVVMEIVITFALVYTVYA 158          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 55/161 (34.16%), Postives = 80/161 (49.69%), Query Frame = 3
Query:  222 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVG----LAAEIIGTFVLVYTVFS 692
            EL+     +A +AEFI+            + +   TD           G++  + A    +FV V   A ISGGH+NPAVTFG F+   +SL++A++Y VAQ LG++    L+K           GGA   A   S GVG    +  E++ TF LVYTV++
Sbjct:   13 ELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGG----AATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKIAT--------GGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYA 161          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 55/158 (34.81%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  222 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAG-VGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 692
            E T     +A +AEFI+            I Y   T+     DG A   G++  + A    +FV V   A ISGGH+NPAV FG F+   ++L+R ++Y++AQ LG+I    L+     S    +G     L++G   G  L  EI+ TF LVYTV++
Sbjct:   13 EATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTN-----DGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYA 159          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 51/157 (32.48%), Postives = 77/157 (49.04%), Query Frame = 3
Query:  222 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 692
            E+   +F +A+ AEF+A            + + S           A   +L I+ AFG  I  +      +SGGH+NPA+T  L +  ++SL+RAV Y+VAQ +GAI+G  ++      Y  R     N L +  + G  + AE+I TF L   VFS
Sbjct:    4 EVCSAAFLKAVFAEFLATLIFVFFGLGSALKWPS-----------AMPSVLQISLAFGLAIGTMAQALGPVSGGHMNPAITLALLVGNQISLLRAVFYLVAQLVGAIAGAAILYGL-APYNARSNLAVNALNNNTTAGQAVVAEMILTFQLALCVFS 148          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 52/157 (33.12%), Postives = 75/157 (47.77%), Query Frame = 3
Query:  222 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 692
            E+   +F +A+ AEF+A            + + S               IL IA AFG  I  L      +SGGHINPA+T  L +  ++SL+RAV Y+VAQ +GAI+G G++         R     N L +  + G  +  E+I TF L   +FS
Sbjct:    4 EVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPT-----------ILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYGLAPG-NARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFS 148          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 50/149 (33.56%), Postives = 71/149 (47.65%), Query Frame = 3
Query:  246 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 692
            +A +AEFIA            I Y   T  A         G++ +A A    +FV V   A +SGGH+NPAVT GL +   ++++  + Y +AQCLG+     L+K           G    +A G     G+  EII TF LVYTV++
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYNKLTSDA----ALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLKFVTNGLSVPTHG----VAAGMDAIQGVVMEIIITFALVYTVYA 159          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 50/157 (31.85%), Postives = 76/157 (48.41%), Query Frame = 3
Query:  222 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 692
            E+   +F++A+ AEF+A            + + S               IL I+ AFG  I  L      +SGGHINPA+T  L +  ++SL+RAV Y+ AQ +GAI+G G++  +      R     N L +  + G  +  E+I TF L   +FS
Sbjct:    4 EVCSLAFFKAVFAEFLATLIFVFFGLGSALKWPSALPT-----------ILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGIL-YWLAPLNARGNLAVNALNNNTTPGKAMVVELILTFQLALCIFS 148          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: AQP_AEDAE (Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 3
Query:  237 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 686
            + +R L+AEF+             +G+     P           +  IA+ FG ++  L      +SG HINPAVT GL +   +S+++   Y+V+QC+GAI+G  L+KA   S     G G   +    + G G+  E + TF+LV+ V
Sbjct:   21 NIWRMLVAEFLGTFFLVSIGIGSTMGWGGDYAPT----------MTQIAFTFGLVVATLAQAFGHVSGCHINPAVTIGLMITADISILKGAFYIVSQCVGAIAGAALIKAATPSDVIG-GLGVTGIDPRLTAGQGVMIEALITFILVFVV 159          
The following BLAST results are available for this feature:
BLAST of FC920487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
TIP21_ARATH1.603e-1437.50Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP22_ORYSJ3.572e-1436.36Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP23_MAIZE6.093e-1436.36Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP12_MAIZE6.093e-1434.16Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP1_MEDSA7.958e-1434.81Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
AQP5_SHEEP7.958e-1432.48Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]
AQP5_PIG1.039e-1333.12Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
TIP_ANTMA3.024e-1333.56Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
AQP5_RAT3.024e-1331.85Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
AQP_AEDAE3.950e-1330.67Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 P... [more]

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Properties
Property NameValue
Genbank descriptionC32009A08EF RVDevelop1 Citrus clementina cDNA clone C32009A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920487 ID=FC920487; Name=FC920487; organism=Citrus clementina; type=EST; length=693bp
GATCCAAAAACAAGCAAAAAAAAAGAAAAAGAAAAAGAAAAAGGAAAAGG
CTTCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCTGT
TTCTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGG
TGGCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCG
GAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAGC
CTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTCT
TGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGAC
GGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCAT
GATCTTTGTCCTCGTTTACTGCACCGCAGGTATCTCAGGTGGTCACATTA
ACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTC
CGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTGT
TGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTG
GGGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCGCC
GAGATCATCGGCACCTTTGTCTTGGTTTACACTGTCTTCTCGG
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