FC920488
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPB3_ORYSJ (Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14 Identity = 55/187 (29.41%), Postives = 89/187 (47.59%), Query Frame = 3 Query: 168 WQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVKGANTQ-WLSM 686 W+ A AT+YG +G GGACG+ N + T+ + +F +G CG+C++++C P C+ ++IT N+ P + + HFDL+ F +A+ AGI+ + ++RVPC G++ T + N VLV G GD+V+V + AN+Q W M Sbjct: 42 WEVARATWYGAPTGAGPDDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCVNHPA-CSGNPETVIITDMNYYPVS--------------KYHFDLSGTAFGAMAKPGQNDQLRHAGIIDIQFKRVPC-NFPGLKVTFHVEEGSNPVYFAVLVEYEDGDGDVVQVDLMEANSQSWTPM 212
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPB2_ARATH (Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=2 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14 Identity = 67/220 (30.45%), Postives = 100/220 (45.45%), Query Frame = 3 Query: 78 LFRMLCFFSVALSLFATANAKIPGVFAG-GPWQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA------QYR-AGIVPVSYRRVPCRKRG-GIRFTINGFRYFN--LVLVTNVAGAGDIVRVSVKGA--NTQWLSMSRN 695 LF + C F+ I W A +T+YG G+ GGACGYGN +Q + +A +LF +G CGAC+++KC C+ NP + + T+ CP C HFDL+ F +A Q R G + + Y++V C G + F ++ N VLV V G G+I R+ +K A + +WLSMS++ Sbjct: 16 LFALTCLLLNLTHCFSPKKFNISAATTSDSDWSIAGSTWYGNPTGYGSDGGACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSA-CSK-NP-VTVVITDECP-----------GCVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQS 221
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPB4_ORYSJ (Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXPB4 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13 Identity = 57/183 (31.15%), Postives = 89/183 (48.63%), Query Frame = 3 Query: 162 GPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTINGFR---YFNLVLVTNVAGAGDIVRVSVKGANT 671 GPW A AT+YG + +G GGACG+ + + T+ + LF +G CG+C++++C D Q C+ + ++IT N+ P P HFDL+ F +LA+ +GI+ + + RVPC G I F + + YF VLV G GD+V+V + + T Sbjct: 53 GPWTKARATWYGQPNGAGPDDNGGACGFKHTNQYPFMSMTSCGNQPLFKDGKGCGSCYKIRCTKD-QSCSGRSETVIITDMNYYP---VAPF-----------HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYF-AVLVEYEDGDGDVVQVDLMESKT 219
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXB10_MAIZE (Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13 Identity = 61/180 (33.89%), Postives = 84/180 (46.67%), Query Frame = 3 Query: 159 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAIL-ITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTIN---GFRYFNLVLVTNVAGAGDIVRVSVK 659 G W A AT+YG +G GG CGY ++ + A + +F +GL CG+CFE+KC P C+ G P ++ IT N+ P HFDLA F +A+ +AGI+ + +RRV C+ + F + G Y L LV V G GDIV V VK Sbjct: 47 GKDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC-DKPVECS-GKPVVVHITDMNYEP--------------IAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSKVTFHLEKGCGPNYLAL-LVKYVDGDGDIVAVDVK 209
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPB9_MAIZE (Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13 Identity = 61/191 (31.94%), Postives = 90/191 (47.12%), Query Frame = 3 Query: 162 GPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNP-AILITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVKG-ANTQWLSM 686 G W +A AT+YG + +G GGACG N+ Y TA + +F +G CG+C+E++C P+ C+ GNP + IT N+ P P HFDL+ F LA+ GI+ V +RRV C+ G + + + N VLV VA GDIV + ++ + +W M Sbjct: 41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CS-GNPVTVFITDMNY---------------EPIAPYHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYVAVLVKFVADDGDIVLMEIQDKLSAEWKPM 214
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPB1_MAIZE (Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13 Identity = 61/191 (31.94%), Postives = 90/191 (47.12%), Query Frame = 3 Query: 162 GPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNP-AILITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVKG-ANTQWLSM 686 G W +A AT+YG + +G GGACG N+ Y TA + +F +G CG+C+E++C P+ C+ GNP + IT N+ P P HFDL+ F LA+ GI+ V +RRV C+ G + + + N VLV VA GDIV + ++ + +W M Sbjct: 41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CS-GNPVTVYITDMNY---------------EPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPM 214
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXB11_MAIZE (Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13 Identity = 56/178 (31.46%), Postives = 80/178 (44.94%), Query Frame = 3 Query: 159 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN--LVLVTNVAGAGDIVRVSVK 659 G W A AT+YG +G GG CGY ++ + A + +F +GL CG+CFE+KC P C+ + IT N+ P HFDLA F +A+ +AGI+ + +RRV C+ + F + N +LV V G GDIV V +K Sbjct: 46 GSDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC-DKPAECSGKPVVVYITDMNYEP--------------IAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSKVTFHLEKGCNPNYLALLVKYVDGDGDIVAVDIK 208
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPB6_ORYSJ (Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXPB6 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13 Identity = 56/195 (28.72%), Postives = 86/195 (44.10%), Query Frame = 3 Query: 159 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTI--NGFRYFNLVLVTNVAGAGDIVRVSVK-------GANTQWLSM 686 G W A AT+YG +G GGACG+ N+ + T+ + +F +G CG+C++++C DP C+ ++IT N+ P R HFDL+ F +A+ +GI+ + +RRVPC G I F + + VLV GD+V+V + GA W M Sbjct: 41 GSGWLPARATWYGAPTGAGPDDNGGACGFKNVNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCNKDPS-CSGNIETVIITDMNYYP--------------VARYHFDLSGTAFGAMAKPGLNDKLRHSGIIDIQFRRVPCNYPGLKINFHVEEGSNPVYFAVLVEYEDLDGDVVQVDLMESKSAYGGATGVWTPM 220
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPB2_ORYSJ (Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXPB2 PE=2 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13 Identity = 51/163 (31.29%), Postives = 77/163 (47.24%), Query Frame = 3 Query: 102 SVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG 563 ++ LS+ AT GV W A AT+YG + +G GGACG+ N + T+ + LF +G CGAC++++C +P C+ ++IT N+ P R HFDL+ F +A+ AGI+ + +RRVPC RG Sbjct: 10 AMLLSVLATYGFAA-GVVYTNDWLPAKATWYGQPNGAGPDDNGGACGFKNTNQYPFMSMTSCGNEPLFQDGKGCGACYQIRCTNNPS-CSGQPRTVIITDMNYYP--------------VARYHFDLSGTAFGAMARPGLNDQLRHAGIIDIQFRRVPCYHRG 156
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXLB1_ARATH (Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13 Identity = 56/201 (27.86%), Postives = 89/201 (44.28%), Query Frame = 3 Query: 105 VALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRG-GIRFTINGFRY---FNLVLVTNVAGAGDIVRVSVKGAN-TQWLSMSR 692 V L LF +P + + ++ AT+YG D G CGYG + +S L+NNG CGAC++++C P G + + AT+ + D + P+ + +A P + Y G+V V Y+R+PCR G + + I+ Y + +LV V G DI+ V V + +W M R Sbjct: 6 VLLLLFVQVIVLLPLLCLSDDFVNSRATYYGSPDCKANPRGHCGYGEFGRDINNGEVSGVSWRLWNNGTGCGACYQVRCKIPPHCSEEG---VYVVATD------SGEGDGTDFILSPKAYGRMARP-GTENQLYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMRR 196 The following BLAST results are available for this feature:
BLAST of FC920488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 91
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920488 ID=FC920488; Name=FC920488; organism=Citrus clementina; type=EST; length=695bpback to top |