FC920490

Overview
NameFC920490
Unique NameFC920490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14152 contig Ccv1_Contig14152:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.883e-72
Identity = 129/174 (74.14%), Postives = 156/174 (89.66%), Query Frame = 1
Query:  178 DLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            D+Y +LK L+++ E + +QE+Y+KDEQ++LKREL RAQEEVKRIQSVPLVIGQF+E +DQN GIV STTG +Y VRILST++RELLKPS SVALHRHSNALVD+LPP++DSSIS++ ++EKPDVTY D+GG D+QKQEIREAVELPL   +LY+QIGIDPPRGVLLYGPPGTGK
Sbjct:   46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGK 219          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 8.651e-72
Identity = 136/176 (77.27%), Postives = 152/176 (86.36%), Query Frame = 1
Query:  172 EDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            E DLY ++KSL+ +L+F +IQEEY+K E KNLKRELL AQEEVKRI+SVPL+IGQ +EMVD N GIV ST+GS   VRILSTI+RELLKPSASVAL RHSNALVD LPPE+DSSI LL   EKP  +Y+DIGG DIQKQE+REAVELPLTHH LYKQIGIDPPRGVLLYGPPGTGK
Sbjct:   22 EADLYQKMKSLESKLDFFNIQEEYIKYEYKNLKRELLHAQEEVKRIRSVPLLIGQLLEMVDSNTGIVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGK 197          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.783e-70
Identity = 131/191 (68.59%), Postives = 158/191 (82.72%), Query Frame = 1
Query:  127 PPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            P P+T  D++       D Y +L +L+RQL  + + E+Y+K E +NL++ELL AQEEVKRIQSVPLVIGQF+E VDQN+ IVGSTTGSNYYVR+LS ++RELLKP  SVALH++SNALVDVLPPEADSSI +L   EKPD++Y DIGG D+QKQE+REAVELPLTH ELY+QIGIDPPRGVL+YGPPG GK
Sbjct:   24 PLPATCVDVSS------DDYIKLTTLERQLAHLQVMEDYIKLETRNLEKELLHAQEEVKRIQSVPLVIGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGK 208          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.210e-59
Identity = 106/173 (61.27%), Postives = 142/173 (82.08%), Query Frame = 1
Query:  181 LYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            L+ R K ++R+L  ++I+E YV+ E + LKRE   ++EE+ R++SVPL++GQF+E +D +  IVGST GSN+ VRILST++RELLKP+ +VALHRHS+A+V VLPPE DS+I ++ +SEKP VTY D+GG D+QKQEI+E VELPL   +LY+QIGIDPP+GVLLYGPPGTGK
Sbjct:    9 LFVRYKQMERKLRLLEIREGYVRKEIETLKREERHSREELDRVKSVPLIMGQFLEPIDSSTAIVGSTAGSNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEKPSVTYGDVGGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGK 181          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.106e-37
Identity = 81/175 (46.29%), Postives = 115/175 (65.71%), Query Frame = 1
Query:  175 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            DD    LK   RQLE   +Q   ++ +++ L+REL R + E+ R++  P   G  +E++D++  IV +  G  + VRI   I RE LKP A VAL + + A+V++LP E D S+      E+P V+YNDIGG D Q QE+REA+ELPL H EL++++GI+PP+GVLLYGPPG GK
Sbjct:   15 DDYIMYLKKRIRQLE---LQVRTLEADKERLERELSRLRMEMSRLRQPPAFAGTLIELLDEDRAIVQNYNGPRFVVRIAPWIERENLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPTVSYNDIGGLDKQLQELREAIELPLKHPELFEKVGIEPPKGVLLYGPPGCGK 186          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.106e-37
Identity = 79/183 (43.17%), Postives = 122/183 (66.67%), Query Frame = 1
Query:  151 LTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            L E+    ++ Y +L+ L R+LE    ++++++ E+   +RE+ R + EV+R++S PL++G   ++++    +V S+TG  + V     IN E LKP A VAL++ + A+V+VLP   D  +      EKP+V+Y DIGG D+Q +EIREAVELPL   EL+ ++GI+PP+GVLLYGPPGTGK
Sbjct:    9 LLEKLKKLEEDYYKLRELYRRLED---EKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKPEVSYEDIGGLDVQIEEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGK 188          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.298e-37
Identity = 81/175 (46.29%), Postives = 114/175 (65.14%), Query Frame = 1
Query:  175 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            DD  + LK   RQLE   +Q   ++ +++ L+REL R + E+ R++  P   G  +E++D    IV +  G  + VRI   I R+ LKP A VAL + + A+V++LP E D S+      E+P VTYNDIGG + Q QE+REA+ELPL H EL++Q+GI+PP+GVLLYGPPG GK
Sbjct:   14 DDYVTFLKRRIRQLE---LQVRTLEADKERLERELSRLRMEMSRLRQPPAFAGNVIEVLDDERAIVQNYNGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPKVTYNDIGGLEKQLQELREAIELPLKHPELFEQVGIEPPKGVLLYGPPGCGK 185          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.541e-36
Identity = 78/177 (44.07%), Postives = 116/177 (65.54%), Query Frame = 1
Query:  169 DEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            D DD  + LK   RQLE   +Q   ++ +++ L+REL R + E+ R++  P   G  +E++D++  IV +  G  + VRI   I+R+ L+P   VAL + + A+V++LP   D ++      E+P+VTYNDIGG   Q QE+REA+ELPL H EL++++GIDPP+GVLLYGPPG GK
Sbjct:   14 DYDDYITYLKRRIRQLE---LQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGK 187          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.485e-36
Identity = 77/175 (44.00%), Postives = 114/175 (65.14%), Query Frame = 1
Query:  175 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            DD  + LK   RQLE   +Q   ++ +++ L+REL R + E+ R++  P   G  +E++D +  IV +  G  + VRI   I R+ L+P A VAL + + A++++LP   D ++      E+P+VTYNDIGG   Q QE+REA+ELPL H EL++++GIDPP+GVLLYGPPG GK
Sbjct:   16 DDYITYLKRRIRQLE---LQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGK 187          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.704e-35
Identity = 75/175 (42.86%), Postives = 113/175 (64.57%), Query Frame = 1
Query:  175 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            DD  + LK   RQLE   +Q   ++ +++ L+REL R + E+ R++  P   G  +E++D +  IV +  G  + VRI   I++  L+P   VAL + + A++++LP   D ++      E+P+VTYNDIGG   Q QE+REA+ELPL H EL++++GIDPP+GVLLYGPPG GK
Sbjct:   13 DDYVTYLKRRIRQLE---LQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGSVIEVLDDDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGK 184          
The following BLAST results are available for this feature:
BLAST of FC920490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PRS6B_YEAST3.883e-7274.1426S protease regulatory subunit 6B homolog OS=Sacc... [more]
PRS6B_DICDI8.651e-7277.2726S protease regulatory subunit 6B homolog OS=Dict... [more]
PRS6B_CAEEL2.783e-7068.59Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PRS6B_ENCCU2.210e-5961.2726S protease regulatory subunit 6B homolog OS=Ence... [more]
PSMR_THEON3.106e-3746.29Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_ARCFU3.106e-3743.17Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PSMR_PYRKO5.298e-3746.29Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PSMR_PYRHO1.541e-3644.07Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_PYRAB4.485e-3644.00Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PSMR_PYRFU1.704e-3542.86Proteasome-activating nucleotidase OS=Pyrococcus f... [more]

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Properties
Property NameValue
Genbank descriptionC32009A12EF RVDevelop1 Citrus clementina cDNA clone C32009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920490 ID=FC920490; Name=FC920490; organism=Citrus clementina; type=EST; length=702bp
CTCGCCGGGGGACAATCATCAATCGACCAATCCTTCGTTACAATTTCTTG
CTGGTCACTCCAAATTCCTCTCAACAAAACAATGGCAGCCTCAGCGATGG
TTCTAGACCCGAAGCCAGTATCGGAGCCACCACCGTCAACAAGATCCGAT
CTGACGGAGCAATGGTCGGACGAAGACGACCTCTACAGCCGACTTAAATC
CCTGCAACGGCAGCTCGAGTTCATCGACATCCAAGAAGAGTACGTCAAAG
ACGAGCAAAAGAACTTGAAGCGTGAACTGCTACGCGCCCAGGAGGAGGTG
AAGCGGATCCAATCGGTGCCGTTGGTAATCGGACAGTTCATGGAGATGGT
GGACCAGAATAACGGCATCGTGGGGTCCACCACCGGCTCTAACTACTACG
TCAGGATTCTTAGCACTATTAATCGGGAGTTGTTGAAACCGTCCGCTTCC
GTCGCTCTCCACCGTCACTCTAACGCCCTTGTTGACGTTCTTCCGCCGGA
AGCCGATTCCAGTATTTCTCTTCTAAGCCAGTCCGAGAAGCCCGACGTTA
CTTATAATGATATTGGAGGATGTGATATTCAAAAGCAGGAAATTCGTGAG
GCTGTGGAGCTACCGCTGACTCACCATGAGCTATACAAGCAAATTGGTAT
AGATCCTCCACGTGGTGTTTTACTTTATGGTCCTCCTGGAACTGGTAAAC
TA
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